Clone MIP05006 Report

Search the DGRC for MIP05006

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:50
Well:6
Vector:pOT2
Associated Gene/TranscriptCG30391-RA
Protein status:MIP05006.pep: gold
Sequenced Size:1504

Clone Sequence Records

MIP05006.complete Sequence

1504 bp assembled on 2009-04-10

GenBank Submission: BT082037.1

> MIP05006.complete
ACACTAAAACACACACAACCGAAAATGGAAATGCGCGATCGGCTGTACCA
AATGATGGTGAGCCAGAGCTTTATGTCGAGAGGCACGGTGACCGCGAGCA
TGGCCAATTTTGCGATTGGAAATCTTAGAAGTTCCGATGCTGTAGAAAAG
AGAGTGATCAAAATTCTGCTGGTGATCGAGGAGAAGTATCGGAGTTACTT
TGACAGCTATAGGAAGGAGCTAGAGCTCCAGAGGATAGCGGCAGAAACAC
TGCACCAGCTAATCCAGCGCTACAAGATCACCATGCAGCTGGACACCAGC
TGCACATGTCCGCAGATCTATGATATCGAATCGGATGATGCGATCATCAA
CAAGTTCTACATCCACTATCAGGTGATAGCCAGTTCAAACAAGAATCAGT
GTTGGGCCATCCAAAGCCTGCGTCCGTATGTGCTTGTCTTTCGCCGTGAA
TGTGCCAAGTTGAATAGGAGCGAGGAGAGCCCCTTCATTCTGGGCGATGC
CTTCCACAAGCCCATTCAGTTCTTTATCGACCTGGTGGAGGAGCTGTTCG
CCTACTTCTACAGTGGACACCTTCAGCTGGATTGCGCGGCGCGTCTGTTG
GATCCCTTGGATCTGTACCGAATGGAGTGCTACATGAAGCTATTGGAGCC
CAACGAGGACTTTGCCGAATACTTTCTGCACAACATAAGCTTCTGCAAAT
GCATGCGGCCGCCACCGATGTGTCCGCCGTACGAACACCATCAGAAGATC
AAGGATCAGTCCGACGCATATCTCAGTCATGCCAAGAAGAAGCGATGTGC
CAGGCGGTTTGAGAGAATGGCCCAAAACGAGGCACAGACTGCGAAGCGGG
AAAGCGGCTCAGTGGAACGGAAAATGTCCATTGGCAGCGCGAGGACGACC
AGGAGTCTAAGTCGGGAGGCTTCTGTCGTGGAAGAAGCCGTATCCGTATC
CAATCAGCAACATGAACGCACCCTAAGGGATCAGCTGATGTGCGCCCTTA
GCATTTCCCCCGAAAAAAGGCACGACGCCACCAACCAATGAGGTCAACTC
GGATTGTAATCGATCAATTAATTGGGCCAAGTGCACGTGATTGCGTTCTC
CGTTTCTCGGAAATGCCGGCGGAAATGTAGTTATACCCAGTTAACTCAAT
CCCTTCAATATTTGTGGCACGCAAATGGGAGTTGTTTACCAAGTAAACTT
CAAAGTGATTATGCACCTCAATTCGGAGATACTTTCAGCTGAGCACACTC
GATTAAAAGTGAGCTTAAGTTTTCACTTCAATCAAGTGAGACACTTCAAA
ATTTGTTGTCAGACGAACCCATTGAAGTTTTTTCAAGTTGGCTTTAAAAT
TAAAAATGTGATTCGTGATTGAACATTATAATCTGTAAACTGCAAAGCTA
ACAAACAAATATAATAAATTCAATTCAGAGTAATATTTTTATTGATGCTC
TAAGTGCCATTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

MIP05006.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG30391-RA 1504 CG30391-RA 74..1504 1..1431 7155 100 Plus
CG30393-RA 1216 CG30393-RA 253..747 213..707 1020 80.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17151315..17152763 1465..1 6885 98.2 Minus
chr2R 21145070 chr2R 17153327..17153880 707..154 1060 79.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:04:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21264801..21266269 1469..1 7345 100 Minus
2R 25286936 2R 21266833..21267386 707..154 1030 79.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21266000..21267468 1469..1 7345 100 Minus
2R 25260384 2R 21268032..21268526 707..213 1020 80.4 Minus
Blast to na_te.dros performed on 2019-03-16 10:33:35 has no hits.

MIP05006.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:34:17 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17151315..17151399 1381..1465 100 == Minus
chr2R 17151400..17152763 1..1364 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:09:19 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
CG30391-RA 1..1017 25..1041 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:08 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
CG30391-RA 1..1017 25..1041 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:43:01 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
CG30391-RA 1..1017 25..1041 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:18 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
CG30391-RA 1..1017 25..1041 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-10 11:29:56 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
CG30391-RA 74..1508 1..1435 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:08 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
CG30391-RA 74..1504 1..1431 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:43:01 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
CG30391-RA 74..1538 1..1465 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:18 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
CG30391-RA 74..1538 1..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:17 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21264805..21266269 1..1465 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:17 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21264805..21266269 1..1465 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:17 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21264805..21266269 1..1465 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:43:01 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17152310..17153774 1..1465 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:22 Download gff for MIP05006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21266004..21267468 1..1465 100   Minus

MIP05006.hyp Sequence

Translation from 0 to 1040

> MIP05006.hyp
TLKHTQPKMEMRDRLYQMMVSQSFMSRGTVTASMANFAIGNLRSSDAVEK
RVIKILLVIEEKYRSYFDSYRKELELQRIAAETLHQLIQRYKITMQLDTS
CTCPQIYDIESDDAIINKFYIHYQVIASSNKNQCWAIQSLRPYVLVFRRE
CAKLNRSEESPFILGDAFHKPIQFFIDLVEELFAYFYSGHLQLDCAARLL
DPLDLYRMECYMKLLEPNEDFAEYFLHNISFCKCMRPPPMCPPYEHHQKI
KDQSDAYLSHAKKKRCARRFERMAQNEAQTAKRESGSVERKMSIGSARTT
RSLSREASVVEEAVSVSNQQHERTLRDQLMCALSISPEKRHDATNQ*

MIP05006.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30391-PA 338 CG30391-PA 1..338 9..346 1755 100 Plus
CG30393-PA 354 CG30393-PA 1..328 9..341 927 55.2 Plus
CG31910-PA 262 CG31910-PA 39..242 42..242 325 30.9 Plus

MIP05006.pep Sequence

Translation from 0 to 1040

> MIP05006.pep
TLKHTQPKMEMRDRLYQMMVSQSFMSRGTVTASMANFAIGNLRSSDAVEK
RVIKILLVIEEKYRSYFDSYRKELELQRIAAETLHQLIQRYKITMQLDTS
CTCPQIYDIESDDAIINKFYIHYQVIASSNKNQCWAIQSLRPYVLVFRRE
CAKLNRSEESPFILGDAFHKPIQFFIDLVEELFAYFYSGHLQLDCAARLL
DPLDLYRMECYMKLLEPNEDFAEYFLHNISFCKCMRPPPMCPPYEHHQKI
KDQSDAYLSHAKKKRCARRFERMAQNEAQTAKRESGSVERKMSIGSARTT
RSLSREASVVEEAVSVSNQQHERTLRDQLMCALSISPEKRHDATNQ*

MIP05006.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12111-PA 349 GF12111-PA 13..342 14..336 940 55.9 Plus
Dana\GF14483-PA 249 GF14483-PA 47..242 63..252 261 31.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20791-PA 323 GG20791-PA 1..323 9..337 1399 79.6 Plus
Dere\GG20790-PA 365 GG20790-PA 1..335 9..342 957 56.5 Plus
Dere\GG23587-PA 262 GG23587-PA 39..242 42..242 298 30.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20032-PA 333 GH20032-PA 33..327 43..336 557 38.3 Plus
Dgri\GH10791-PA 235 GH10791-PA 13..216 42..242 326 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30391-PA 338 CG30391-PA 1..338 9..346 1755 100 Plus
CG30393-PA 354 CG30393-PA 1..328 9..341 927 55.2 Plus
CG31910-PA 262 CG31910-PA 39..242 42..242 325 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19210-PA 339 GI19210-PA 37..261 43..269 516 43.9 Plus
Dmoj\GI17302-PA 236 GI17302-PA 20..229 49..252 323 34.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10759-PA 341 GL10759-PA 16..283 20..286 728 53.3 Plus
Dper\GL15157-PA 226 GL15157-PA 1..148 95..242 522 62.8 Plus
Dper\GL25964-PA 254 GL25964-PA 31..234 42..242 284 30.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15812-PA 341 GA15812-PA 16..283 20..286 723 53 Plus
Dpse\GA22788-PA 248 GA22788-PA 21..237 26..241 664 58.5 Plus
Dpse\GA16557-PA 254 GA16557-PA 31..234 42..242 292 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15737-PA 365 GM15737-PA 1..338 9..346 1692 93.8 Plus
Dsec\GM15736-PA 360 GM15736-PA 1..329 9..341 932 55.8 Plus
Dsec\GM13880-PA 262 GM13880-PA 39..242 42..242 318 32.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25214-PA 365 GD25214-PA 1..338 9..346 1695 93.5 Plus
Dsim\GD25213-PA 360 GD25213-PA 1..329 9..341 943 55.8 Plus
Dsim\GD22546-PA 262 GD22546-PA 39..242 42..242 315 31.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20280-PA 358 GJ20280-PA 43..344 43..344 600 42.7 Plus
Dvir\GJ15702-PA 236 GJ15702-PA 20..216 49..242 319 35.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15800-PA 313 GK15800-PA 20..309 38..329 594 42.3 Plus
Dwil\GK24215-PA 239 GK24215-PA 23..219 49..242 302 32.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13729-PA 327 GE13729-PA 1..327 9..337 1469 81.8 Plus
Dyak\GE13728-PA 367 GE13728-PA 1..360 9..338 959 51.9 Plus
Dyak\GE18408-PA 261 GE18408-PA 22..241 26..242 306 29.5 Plus