Clone MIP05435 Report

Search the DGRC for MIP05435

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:54
Well:35
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptBzd-RB
Protein status:MIP05435.pep: gold
Sequenced Size:1780

Clone Sequence Records

MIP05435.complete Sequence

1780 bp assembled on 2009-02-18

GenBank Submission: BT060437.1

> MIP05435.complete
TAAACACCATGGTGTTGTTGTTTTTGTGTTTGCCAGCGATTTGCGTAAAT
TGTGTTTGTTTTTGTGGCCAAAAATAGAAATCAGATGCCGCAAAATATTC
AAAAAGCATTCGAAACAATATTTTTGATCTTCAGGTGTGCGCTCATTTTC
AGTCGTCAGTGAGACGGGCCCCCAGGCGAAAGTCTTTGTTGTTGCTCCGT
TCGAGCGAAATGGCCACCGCCACCGTTGGTTCATCCAGATCCGCAACCAC
ATCCGCAACCGCATCCGCATGCTCATCCAAATCCAAGAACCTAAAGAATC
CGGCGCCGCAAATAAAAAGGGGACAGCGGATCCTCACGGAGAAACCATTC
GCCTTCGTCTTGAAATCACAGTACCGCCTGGAGCGGTGCGATAACTGCCT
GGAGGCGACCAAGGTGCTGAAGTGCTCCAACTGCAGGTATGTGTCCTACT
GCCACCGCTCATGCCAGATGCAAGCTTGGGGCCAGCACAAGCACGAGTGT
CCTTTCCTCAAGAAGGTGCATCCTCGAGTTGTGCCCGATGCTGCCCGAAT
GCTCTGCCGACTGATCCTGCGCCTGGAGCACGGCGGAGACCTGATCCGCG
GCTATTACACCGAGCACGGCTCCCGCAAGTTTCGCGATCTCATGTCCCAT
TACGCCGAAATCAAGAACGATCCCATGCGACTGGAGCACTTGGACTCGCT
GCATGCCGTCCTCACCGATATGATGGCCGAGAGTCCCAGCACGGTGCCAA
ACAAGACGGAACTGATGAGCATCTATGGTCGCCTGATCACCAATGGCTTC
AATATCTTGGACGCCGAGATGAACTCAATTGCCACGGCCATATATCTGGG
CGTCTCGATTACGGACCATAGCTGCCAGCCAAATGCGGTCGCCACCTTCG
AGGGCAACGAGCTGCACGTCCACGCGATCGAGGACATGGAATGCCTGGAC
TGGTCGAAAATCTTCATCAGCTACATCGACCTGCTCAATACGCCGGAGCA
GAGGCGTCTGGACCTCAAGGAGCACTACTACTTCCTATGCGTGTGCAGCA
AGTGCACGGATGCCAAGGAATCGAAGGAGATGCTGGCTGCCCTGTGTCCC
AATCGCAACTGCGGTGCGGGAATCAGTGTGGACCGCAATAATTGCCCGCG
ATGCGATGCCGGCATCAGTCCCAAGTTGAGAAATGCCTTCAACGAGGCGA
TGACTCTGACCCGGCACAATCTGGAGAACATGAAGGACGTGGCCTATCTC
GATGTGTGCAAGGTGTGTCTGGACAAGCAGACTGGCGTGTTCCATCCCCT
GAATGTGTGGTACGTCAAGACGCTCGATGCGGCCTTCGAAGCAGCCATCG
AAGTGGGCAAGTGGAGCGACGCCCTGGATTACGGGCAACGTTTGCTGCCA
GGCTTTCGAAAATACCACGGACCCTGGAATCCGCTATTGGGCCTGCTTCA
CATGAAGCTGGGCAAGATTCAGCTCTACGAGGGCCATTCCAAGGAGGCAC
TGCACCATCTGGAGGAGGCCCAACGCATCCTAACCGTCACCCACGGCCGA
GATCACAGACTGCTTACTGAGCAGCTATACATGCTCGTTCTACAAGCGCG
ACAAGAGGCGCACTAATGGGATTTAGTTGTTTTTATTCATTTAAATAAGT
CTTAAGTTAAATATTGTGTTGCGTTGCGGGAAGAATGGAATGGATTTTTG
TGGATAATTACTTTTCTATGTACAACAGAAACCATTCGGAGAATTAAAGA
TTATCAAATTCTAAAAAAAAAAAAAAAAAA

MIP05435.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Bzd-RB 1866 Bzd-RB 101..1863 1..1763 8815 100 Plus
mit(1)15-RB 2726 mit(1)15-RB 2575..2726 1763..1612 760 100 Minus
mit(1)15-RC 2637 mit(1)15-RC 2489..2637 1763..1615 745 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2500462..2500978 1762..1246 2585 100 Minus
chrX 22417052 chrX 2501044..2501506 1245..783 2285 99.6 Minus
chrX 22417052 chrX 2502252..2502658 407..1 2035 100 Minus
chrX 22417052 chrX 2501953..2502194 648..407 1210 100 Minus
chrX 22417052 chrX 2501752..2501885 782..649 670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:04:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2606679..2607196 1763..1246 2590 100 Minus
X 23542271 X 2607262..2607724 1245..783 2315 100 Minus
X 23542271 X 2608470..2608876 407..1 2035 100 Minus
X 23542271 X 2608171..2608412 648..407 1210 100 Minus
X 23542271 X 2607970..2608103 782..649 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2614777..2615294 1763..1246 2590 100 Minus
X 23527363 X 2615360..2615822 1245..783 2315 100 Minus
X 23527363 X 2616568..2616974 407..1 2035 100 Minus
X 23527363 X 2616269..2616510 648..407 1210 100 Minus
X 23527363 X 2616068..2616201 782..649 670 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:11:59 has no hits.

MIP05435.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:13:06 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2501044..2501506 783..1245 99 <- Minus
chrX 2500462..2500978 1246..1762 100 <- Minus
chrX 2501752..2501885 649..782 100 <- Minus
chrX 2501953..2502194 407..648 100 <- Minus
chrX 2502253..2502658 1..406 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:51 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
Bzd-RB 1..1407 210..1616 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:11 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
Bzd-RB 1..1407 210..1616 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:42 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
Bzd-RB 1..1407 210..1616 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:32 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
Bzd-RB 1..1407 210..1616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-18 13:12:49 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
Bzd-RB 1..1553 210..1762 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:11 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
Bzd-RB 1..1553 210..1762 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:42 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
Bzd-RB 1..1762 1..1762 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:32 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
Bzd-RB 1..1762 1..1762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:06 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
X 2606680..2607196 1246..1762 100 <- Minus
X 2607262..2607724 783..1245 100 <- Minus
X 2607970..2608103 649..782 100 <- Minus
X 2608171..2608412 407..648 100 <- Minus
X 2608471..2608876 1..406 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:06 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
X 2606680..2607196 1246..1762 100 <- Minus
X 2607262..2607724 783..1245 100 <- Minus
X 2607970..2608103 649..782 100 <- Minus
X 2608171..2608412 407..648 100 <- Minus
X 2608471..2608876 1..406 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:06 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
X 2606680..2607196 1246..1762 100 <- Minus
X 2607262..2607724 783..1245 100 <- Minus
X 2607970..2608103 649..782 100 <- Minus
X 2608171..2608412 407..648 100 <- Minus
X 2608471..2608876 1..406 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:42 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2500713..2501229 1246..1762 100 <- Minus
arm_X 2501295..2501757 783..1245 100 <- Minus
arm_X 2502003..2502136 649..782 100 <- Minus
arm_X 2502204..2502445 407..648 100 <- Minus
arm_X 2502504..2502909 1..406 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:08:32 Download gff for MIP05435.complete
Subject Subject Range Query Range Percent Splice Strand
X 2616068..2616201 649..782 100 <- Minus
X 2614778..2615294 1246..1762 100 <- Minus
X 2615360..2615822 783..1245 100 <- Minus
X 2616269..2616510 407..648 100 <- Minus
X 2616569..2616974 1..406 100   Minus

MIP05435.pep Sequence

Translation from 209 to 1615

> MIP05435.pep
MATATVGSSRSATTSATASACSSKSKNLKNPAPQIKRGQRILTEKPFAFV
LKSQYRLERCDNCLEATKVLKCSNCRYVSYCHRSCQMQAWGQHKHECPFL
KKVHPRVVPDAARMLCRLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYAE
IKNDPMRLEHLDSLHAVLTDMMAESPSTVPNKTELMSIYGRLITNGFNIL
DAEMNSIATAIYLGVSITDHSCQPNAVATFEGNELHVHAIEDMECLDWSK
IFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAALCPNRN
CGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMKDVAYLDVC
KVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFR
KYHGPWNPLLGLLHMKLGKIQLYEGHSKEALHHLEEAQRILTVTHGRDHR
LLTEQLYMLVLQARQEAH*

MIP05435.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21943-PA 459 GF21943-PA 6..459 13..468 2153 86 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12606-PA 468 GG12606-PA 1..468 1..468 2374 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17625-PA 457 GH17625-PA 19..455 35..466 1849 77.8 Plus
Dgri\GH17627-PA 457 GH17627-PA 19..455 35..466 1837 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Smyd3-PB 468 CG13761-PB 1..468 1..468 2505 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16066-PA 448 GI16066-PA 9..446 35..466 1791 77.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12938-PA 420 GL12938-PA 6..420 35..468 1937 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12511-PA 439 GA12511-PA 6..438 35..467 2080 86.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18871-PA 466 GM18871-PA 1..466 1..468 2466 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15711-PA 448 GJ15711-PA 13..446 34..466 1920 80.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16327-PA 461 GK16327-PA 18..447 31..460 1967 83 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16937-PA 469 GE16937-PA 18..467 18..467 2376 96.2 Plus

MIP05435.hyp Sequence

Translation from 209 to 1615

> MIP05435.hyp
MATATVGSSRSATTSATASACSSKSKNLKNPAPQIKRGQRILTEKPFAFV
LKSQYRLERCDNCLEATKVLKCSNCRYVSYCHRSCQMQAWGQHKHECPFL
KKVHPRVVPDAARMLCRLILRLEHGGDLIRGYYTEHGSRKFRDLMSHYAE
IKNDPMRLEHLDSLHAVLTDMMAESPSTVPNKTELMSIYGRLITNGFNIL
DAEMNSIATAIYLGVSITDHSCQPNAVATFEGNELHVHAIEDMECLDWSK
IFISYIDLLNTPEQRRLDLKEHYYFLCVCSKCTDAKESKEMLAALCPNRN
CGAGISVDRNNCPRCDAGISPKLRNAFNEAMTLTRHNLENMKDVAYLDVC
KVCLDKQTGVFHPLNVWYVKTLDAAFEAAIEVGKWSDALDYGQRLLPGFR
KYHGPWNPLLGLLHMKLGKIQLYEGHSKEALHHLEEAQRILTVTHGRDHR
LLTEQLYMLVLQARQEAH*

MIP05435.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Bzd-PB 468 CG13761-PB 1..468 1..468 2505 100 Plus