Clone MIP05446 Report

Search the DGRC for MIP05446

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:54
Well:46
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG17974-RA
Protein status:MIP05446.pep: gold
Sequenced Size:1038

Clone Sequence Records

MIP05446.complete Sequence

1038 bp assembled on 2009-02-18

GenBank Submission: BT060439.1

> MIP05446.complete
AAACATCCAATAAAGACGGCCACGGTTTTGGCCAGAATCTGATTGAAAGT
GCCAAGTCCCGGAGAGATAGGCGGAGCATACCAATTTAGTTTCTAATTTA
AGTTTATTTTTGTCAGTGAGCTAGTAAATATGTCGTCGCCTTTGATCTGC
TTGGCCATATTCCAGCTGATTTTCCAGTTGATCCTGGCCAAGGATTATTC
CTGGTGTGATCCAGATTTATGCGGCAATGGCGTCAGACATATCGCGTGCC
GAACAACTGGAAATTTCCACAGGCGCTGCCAACCAGATGCAGTCCAAGTG
GATGTAAGCCGGCACAAGGCGGATTTCCTGCATGCCCACAACAAGAGGAG
GAACTTCCTGGCTCTAGGAAAAGTGCCAGGCTATTATCCTGCCGCCAGAA
TGGCCACAATGGTGTGGGACGACGAGCTGCAGTACTTGTCCATGCTAAAT
ACCCGCACCTGTAAGTTGGACCACGATGATTGCCACAACACCTACCGGTA
CGCCAACTCGGGTCAGAATCTGTGTGCCGTGTGGCGTCCACGGAGTCCAC
ATGTGAATGTGACTAGCTTGGTGGAGGAGTGCCTGGGTCTCTGGTTCAAC
GAGTTCGATCTGATAGACAGCAGCTTCATCGATTCTTTTAAAGTCACGCC
CATATTTGAGGACTACGGTCACTTTGCCGAGTTAAGTGTGGACAAAAACT
TCGCCGTGGGCTGCTCCATCATGAGATTTACTCGTCCCGACTATCCATCC
GTGTATATCTACAACTTTATCTGCAACTATGCTTCACTCTACGCCTTGGG
CGCTCCAGTTTATGAGACTGGACGAGCGGCCTCCCGTTGCACCACGGGCA
AGAGCCACTTCTATCCGGGATTATGTTCCACCCGCGAGGTGTACGATCCC
AATTGGTAATAGTTCGCCACTCCAGGGGGATTCCCTCCACTCAGGTACAA
CTGCCAAGAGTATTTAGTAGCCCGTAGCTTTAGATCGAATACAAGCCAAT
AAATGATCGCATCGATTCCAAAAAAAAAAAAAAAAAAA

MIP05446.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17974-RA 2057 CG17974-RA 281..1300 1..1020 5100 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17235404..17235766 1019..657 1785 99.4 Minus
chr2R 21145070 chr2R 17236777..17237037 261..1 1275 99.2 Minus
chr2R 21145070 chr2R 17235826..17236071 656..411 1170 98.4 Minus
chr2R 21145070 chr2R 17236129..17236280 413..262 745 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:04:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21348944..21349307 1020..657 1820 100 Minus
2R 25286936 2R 21350304..21350564 261..1 1305 100 Minus
2R 25286936 2R 21349367..21349612 656..411 1230 100 Minus
2R 25286936 2R 21349670..21349821 413..262 760 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21350143..21350506 1020..657 1820 100 Minus
2R 25260384 2R 21351503..21351763 261..1 1305 100 Minus
2R 25260384 2R 21350566..21350811 656..411 1230 100 Minus
2R 25260384 2R 21350869..21351020 413..262 760 100 Minus
2R 25260384 2R 21348673..21348741 442..374 165 82.6 Minus
Blast to na_te.dros performed 2019-03-15 23:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 1484..1521 287..324 109 76.3 Plus

MIP05446.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:42:32 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17235404..17235766 657..1019 99 <- Minus
chr2R 17235826..17236070 412..656 98 <- Minus
chr2R 17236131..17236280 262..411 99 <- Minus
chr2R 17236777..17237037 1..261 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:48 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17974-RA 1..780 130..909 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:05 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17974-RA 1..780 130..909 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:30:53 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17974-RA 1..780 130..909 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:55 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17974-RA 1..780 130..909 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-18 11:55:47 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17974-RA 281..1299 1..1019 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:04 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17974-RA 281..1299 1..1019 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:30:53 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17974-RA 15..1033 1..1019 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:55 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
CG17974-RA 15..1033 1..1019 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:32 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21348945..21349307 657..1019 100 <- Minus
2R 21349367..21349611 412..656 100 <- Minus
2R 21349672..21349821 262..411 100 <- Minus
2R 21350304..21350564 1..261 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:32 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21348945..21349307 657..1019 100 <- Minus
2R 21349367..21349611 412..656 100 <- Minus
2R 21349672..21349821 262..411 100 <- Minus
2R 21350304..21350564 1..261 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:32 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21348945..21349307 657..1019 100 <- Minus
2R 21349367..21349611 412..656 100 <- Minus
2R 21349672..21349821 262..411 100 <- Minus
2R 21350304..21350564 1..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:30:53 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17236872..17237116 412..656 100 <- Minus
arm_2R 17237177..17237326 262..411 100 <- Minus
arm_2R 17237809..17238069 1..261 100   Minus
arm_2R 17236450..17236812 657..1019 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:08:25 Download gff for MIP05446.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21350144..21350506 657..1019 100 <- Minus
2R 21350566..21350810 412..656 100 <- Minus
2R 21350871..21351020 262..411 100 <- Minus
2R 21351503..21351763 1..261 100   Minus

MIP05446.pep Sequence

Translation from 129 to 908

> MIP05446.pep
MSSPLICLAIFQLIFQLILAKDYSWCDPDLCGNGVRHIACRTTGNFHRRC
QPDAVQVDVSRHKADFLHAHNKRRNFLALGKVPGYYPAARMATMVWDDEL
QYLSMLNTRTCKLDHDDCHNTYRYANSGQNLCAVWRPRSPHVNVTSLVEE
CLGLWFNEFDLIDSSFIDSFKVTPIFEDYGHFAELSVDKNFAVGCSIMRF
TRPDYPSVYIYNFICNYASLYALGAPVYETGRAASRCTTGKSHFYPGLCS
TREVYDPNW*

MIP05446.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12099-PA 263 GF12099-PA 1..263 1..259 1213 84 Plus
Dana\GF12100-PA 263 GF12100-PA 3..260 2..259 798 54.7 Plus
Dana\GF20496-PA 256 GF20496-PA 7..253 11..258 401 33.6 Plus
Dana\GF21595-PA 256 GF21595-PA 10..255 4..256 377 35.5 Plus
Dana\GF21598-PA 255 GF21598-PA 3..253 8..258 372 34.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20780-PA 261 GG20780-PA 8..261 6..259 1306 92.5 Plus
Dere\GG20782-PA 263 GG20782-PA 9..259 8..258 778 55 Plus
Dere\GG18928-PA 253 GG18928-PA 1..249 1..258 412 35.7 Plus
Dere\GG19450-PA 288 GG19450-PA 37..286 5..258 368 35.7 Plus
Dere\GG13982-PA 277 GG13982-PA 1..261 1..256 363 32.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21184-PA 264 GH21184-PA 10..264 7..259 1026 71.8 Plus
Dgri\GH21186-PA 270 GH21186-PA 29..264 24..259 768 58.1 Plus
Dgri\GH17451-PA 253 GH17451-PA 2..252 8..256 394 36.5 Plus
Dgri\GH12878-PA 260 GH12878-PA 29..258 24..259 382 34.6 Plus
Dgri\GH12213-PA 256 GH12213-PA 4..254 6..255 367 33.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17974-PA 259 CG17974-PA 1..259 1..259 1437 100 Plus
CG9822-PA 263 CG9822-PA 14..259 13..258 799 56.1 Plus
CG32679-PA 254 CG32679-PA 8..250 5..258 422 38.2 Plus
Ag5r2-PA 254 CG9540-PA 3..252 5..258 368 35.1 Plus
CG6628-PA 277 CG6628-PA 1..260 1..255 357 33.3 Plus
Ag5r-PC 256 CG9538-PC 7..252 10..258 344 34.3 Plus
Ag5r-PB 256 CG9538-PB 7..252 10..258 344 34.3 Plus
Ag5r-PA 256 CG9538-PA 7..252 10..258 344 34.3 Plus
scpr-B-PA 262 CG17210-PA 5..251 7..256 323 32.9 Plus
scpr-C-PB 262 CG5106-PB 6..251 8..256 317 33.1 Plus
scpr-C-PA 262 CG5106-PA 6..251 8..256 317 33.1 Plus
CG42564-PA 500 CG10284-PA 55..284 25..256 313 31.2 Plus
CG42780-PA 253 CG42780-PA 21..251 24..250 312 35.2 Plus
scpr-A-PA 264 CG5207-PA 6..253 10..256 310 31.9 Plus
CG9400-PA 308 CG9400-PA 45..285 20..253 304 32.1 Plus
CG42780-PB 254 CG42780-PB 21..252 24..250 301 35 Plus
CG17575-PA 291 CG17575-PA 10..283 8..256 292 30.9 Plus
CG17575-PB 298 CG17575-PB 10..290 8..256 283 30.3 Plus
CG30486-PA 263 CG30486-PA 4..255 5..258 262 29.7 Plus
CG3640-PA 296 CG3640-PA 9..253 6..258 260 28 Plus
antr-PB 272 CG30488-PB 17..254 18..258 205 30.1 Plus
CG34002-PB 350 CG34002-PB 7..255 1..253 197 25.1 Plus
antr-PA 265 CG30488-PA 17..247 18..258 184 29.7 Plus
CG8483-PA 392 CG8483-PA 34..214 60..250 161 28.4 Plus
CG43775-PA 272 CG43775-PA 1..269 1..255 158 25.6 Plus
CG8072-PA 247 CG8072-PA 14..247 13..256 154 26.3 Plus
CG10651-PB 316 CG10651-PB 7..252 13..254 152 27.2 Plus
CG10651-PA 316 CG10651-PA 7..252 13..254 152 27.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20471-PA 263 GI20471-PA 10..263 7..259 1066 74.8 Plus
Dmoj\GI20472-PA 267 GI20472-PA 23..264 18..259 767 55 Plus
Dmoj\GI15744-PA 256 GI15744-PA 24..255 25..256 399 36.7 Plus
Dmoj\GI15745-PA 257 GI15745-PA 29..252 34..258 370 36.8 Plus
Dmoj\GI15747-PA 256 GI15747-PA 45..252 50..258 332 37.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11846-PA 261 GL11846-PA 7..261 3..259 1184 82.5 Plus
Dper\GL11847-PA 263 GL11847-PA 7..258 8..259 784 55.6 Plus
Dper\GL20410-PA 254 GL20410-PA 22..252 26..258 357 35.9 Plus
Dper\GL14627-PA 248 GL14627-PA 3..241 5..244 345 34.8 Plus
Dper\GL20409-PA 257 GL20409-PA 5..253 8..258 343 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14749-PA 261 GA14749-PA 7..261 3..259 1190 82.9 Plus
Dpse\GA22059-PA 263 GA22059-PA 7..258 8..259 784 55.6 Plus
Dpse\GA23354-PA 263 GA23354-PA 16..259 4..258 407 36.5 Plus
Dpse\GA29233-PA 258 GA29233-PA 1..257 1..256 390 34.4 Plus
Dpse\GA28431-PA 253 GA28431-PA 6..249 6..253 369 35.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15725-PA 258 GM15725-PA 2..258 3..259 1386 98.8 Plus
Dsec\GM15726-PA 263 GM15726-PA 9..259 8..258 788 55.4 Plus
Dsec\GM11319-PA 237 GM11319-PA 7..233 23..258 413 38.9 Plus
Dsec\GM12040-PA 254 GM12040-PA 3..252 5..258 364 35.3 Plus
Dsec\GM12039-PA 256 GM12039-PA 7..252 10..258 359 35.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25202-PA 258 GD25202-PA 2..258 3..259 1383 98.4 Plus
Dsim\GD25203-PA 263 GD25203-PA 9..259 8..258 783 55 Plus
Dsim\GD16039-PA 254 GD16039-PA 8..250 5..258 427 38.2 Plus
Dsim\GD12870-PA 277 GD12870-PA 1..261 1..256 357 32.1 Plus
Dsim\GD20669-PA 262 GD20669-PA 30..251 36..256 315 34.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22321-PA 263 GJ22321-PA 6..263 3..259 1079 73.6 Plus
Dvir\GJ22322-PA 262 GJ22322-PA 3..259 1..259 777 54.4 Plus
Dvir\GJ18605-PA 253 GJ18605-PA 4..252 6..256 394 36.1 Plus
Dvir\GJ10116-PA 253 GJ10116-PA 2..252 8..256 377 35.8 Plus
Dvir\GJ18606-PA 256 GJ18606-PA 5..252 8..258 364 35.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20746-PA 265 GK20746-PA 4..263 1..258 1084 76.5 Plus
Dwil\GK20747-PA 259 GK20747-PA 8..255 5..253 773 55 Plus
Dwil\GK14741-PA 240 GK14741-PA 1..238 19..255 416 36.2 Plus
Dwil\GK18435-PA 257 GK18435-PA 1..256 10..256 394 35.4 Plus
Dwil\GK25699-PA 253 GK25699-PA 8..249 8..258 376 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13718-PA 262 GE13718-PA 4..262 1..259 1306 91.5 Plus
Dyak\GE13719-PA 263 GE13719-PA 9..259 8..258 791 56.2 Plus
Dyak\GE15398-PA 253 GE15398-PA 1..249 1..258 442 38.8 Plus
Dyak\GE16103-PA 283 GE16103-PA 32..281 5..258 372 35.7 Plus
Dyak\Ag5r-PA 256 GE16102-PA 7..252 10..258 364 35.1 Plus

MIP05446.hyp Sequence

Translation from 129 to 908

> MIP05446.hyp
MSSPLICLAIFQLIFQLILAKDYSWCDPDLCGNGVRHIACRTTGNFHRRC
QPDAVQVDVSRHKADFLHAHNKRRNFLALGKVPGYYPAARMATMVWDDEL
QYLSMLNTRTCKLDHDDCHNTYRYANSGQNLCAVWRPRSPHVNVTSLVEE
CLGLWFNEFDLIDSSFIDSFKVTPIFEDYGHFAELSVDKNFAVGCSIMRF
TRPDYPSVYIYNFICNYASLYALGAPVYETGRAASRCTTGKSHFYPGLCS
TREVYDPNW*

MIP05446.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17974-PA 259 CG17974-PA 1..259 1..259 1437 100 Plus
CG9822-PA 263 CG9822-PA 14..259 13..258 799 56.1 Plus
CG32679-PA 254 CG32679-PA 8..250 5..258 422 38.2 Plus
Ag5r2-PA 254 CG9540-PA 3..252 5..258 368 35.1 Plus
CG6628-PA 277 CG6628-PA 1..260 1..255 357 33.3 Plus