Clone MIP05449 Report

Search the DGRC for MIP05449

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:54
Well:49
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptDdr-RD
Protein status:MIP05449.pep: gold
Sequenced Size:1707

Clone Sequence Records

MIP05449.complete Sequence

1707 bp assembled on 2011-09-16

GenBank Submission: BT128907.1

> MIP05449.complete
TCGGACAACTGGCGGTGTTGCACCTATCGTTATCGGCCATCGGCAATCGA
TTGTCGGCAATCGGCTATCGACAACAAACTATCGTTATCGGTTATCGTGT
GTGTCGACCTTGGTGGTGATTAGTGTTAACGGTAACTTAACCATGTGCAA
CATCATCAAGCGAATATTGGATCATCCGCAGGACTCCAAAGGCCTCCGAA
TGTCCAGAGCCTGAACATAAAAAAAAAATGGCCAACGTGTGAAAAACGAG
AGAGGAAAATACGAGAAATCAAAATGCCTGCAATAAAGTTACAAGAATCG
AATTCAATTTATTCACGGAGCGAATGTTCGCCCACAATTGGAGTTCCAGC
ACTCGTGGAGAGTCAAGGGGGCGAGGGGCACGAGTCGCGGCGCCCTGCAA
CAAATTATTTAAAAAGTTATTGCCGCATTAAGCGTCATGGTGTTAATAAC
AGTAAAACTTTATGTTGGCTGACACTGACTTTGATTTTATTGGCCAACCG
ATTTGGAATGGGCACAGCAGTCGGAACGCCGGAAACACCAGCTGCCGTAG
GATCCAATGGGCTGCTGGCGGAAATGCCAATCGGAACCTGCAAACAGGCC
TTGGGCATGGAGTCTGGCGCCATCGCCGACTTTCAAATAACGGCCAGTTC
GGCCCATGATATGGGAAATGTGGGACCACAGCATGCCAGACTTAAGATAG
ACAACAACGGAGGCGCTTGGTGTCCCAAGCACATGGTATCTCGTGGTCTG
ACGGAGTACCTGCAAGTCGACCTGCTAGGTGTCCACCTGGTCAGTGCCAT
ACGAACCCAGGGTCGCTTTGGCAAGGGGCAGGGCCAGGAGTATACCGAAG
CCTATGTGATTGAGTACTGGAGGCCGGGCCTCAAGAAATGGATTCGATGG
AGGAGCCTCCAAGGCAAAGAGGTGCTGCCCGGCAACATAAACACCTACAG
CGAGGTGGAGAACGTGCTCCAGCCCAGCGTCTTTGCGTCCAAGGTGCGAC
TCTATCCCTACAGCCAGTACGATCGCACCGTCTGCCTGCGCGCCGAGATC
GTCGGCTGTGCCTGGGAAGAGGGAATTGTATCGTACAGTATTCCCAAGGG
CATGCAGAGGGGCATGGACATCGATCTGTCGGACAAAACCTACGATGGAT
ACGAGGAGGGTGATCATTATGTCAACGGTTTGGGCCAACTTGTTGATGGT
CAGCGGGGCAAGGACAACTTTCGAGCCGATATTAATGGCCTTGGCAAAGG
TTACGAATGGATTGGCTGGCGAAACGACACTTTGCTCGGGCGTCCAGTTG
AAATCATATTCGAGTTTGAGACAGTTCGGAATTTAAGTGCTGTTATCATA
CACACCAACAACATGTTTTCCAAAGATGTTCAGGTAAATAAAAAGTTAAA
CACAAAAACCAACTAAAATCAAGCTTTTTCCGTAAGCCCTTAAATCAATG
ATTAAACACATCTTAAGGTAATCTTGCTTGCCCTACTTAATTTTTTATTT
TACTTGTTAACTAGTGCTATTCACTTAATCACCACATCTACAAAATTCCG
TTGAAGTAAATCGTAAAAGCAAAAACGCAATGGGTTGCCTGGAACCACAA
ATGGGGGTCCCTCGCCAGACAAACTGGCGGCGAAATGAGCAAATAAGAGC
TAAACATTTCCAGCAACTTCCACCCAAAGCAATAATAATAAAAAAAAAAA
AAAAAAA

MIP05449.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6290293..6290734 1248..1689 2210 100 Plus
chr2L 23010047 chr2L 6271797..6272177 205..584 1855 99.7 Plus
chr2L 23010047 chr2L 6288812..6289049 687..924 1190 100 Plus
chr2L 23010047 chr2L 6252173..6252379 1..207 1035 100 Plus
chr2L 23010047 chr2L 6290054..6290237 1068..1251 920 100 Plus
chr2L 23010047 chr2L 6289592..6289741 920..1069 750 100 Plus
chr2L 23010047 chr2L 6277728..6277834 583..689 535 100 Plus
chr2L 23010047 chr2L 6195903..6196047 925..1069 335 82.1 Plus
chr2L 23010047 chr2L 6195612..6195828 707..923 320 76.5 Plus
chr2L 23010047 chr2L 6200311..6200463 1068..1220 285 79.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6291243..6291702 1248..1707 2255 99.3 Plus
2L 23513712 2L 6272747..6273127 205..584 1855 99.7 Plus
2L 23513712 2L 6289762..6289999 687..924 1190 100 Plus
2L 23513712 2L 6253123..6253329 1..207 1035 100 Plus
2L 23513712 2L 6291004..6291187 1068..1251 920 100 Plus
2L 23513712 2L 6290542..6290691 920..1069 750 100 Plus
2L 23513712 2L 6278678..6278784 583..689 535 100 Plus
2L 23513712 2L 6196852..6196996 925..1069 335 82.1 Plus
2L 23513712 2L 6196561..6196777 707..923 320 76.5 Plus
2L 23513712 2L 6201260..6201412 1068..1220 285 79.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6291243..6291702 1248..1707 2255 99.3 Plus
2L 23513712 2L 6272747..6273127 205..584 1865 99.7 Plus
2L 23513712 2L 6289762..6289999 687..924 1190 100 Plus
2L 23513712 2L 6253123..6253329 1..207 1035 100 Plus
2L 23513712 2L 6291004..6291187 1068..1251 920 100 Plus
2L 23513712 2L 6290542..6290691 920..1069 750 100 Plus
2L 23513712 2L 6278678..6278784 583..689 535 100 Plus
2L 23513712 2L 6196852..6196996 925..1069 335 82 Plus
2L 23513712 2L 6201260..6201412 1068..1220 285 79 Plus
2L 23513712 2L 6196659..6196777 805..923 250 80.6 Plus
2L 23513712 2L 6196561..6196630 707..776 155 81.4 Plus
2L 23513712 2L 6203232..6203320 1297..1385 145 77.5 Plus
Blast to na_te.dros performed 2019-03-15 11:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker 7256 Stalker STALKER 7256bp 6590..6709 1386..1503 126 59.5 Plus

MIP05449.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:02:49 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6289594..6289741 922..1069 100 -> Plus
chr2L 6252173..6252379 1..207 100 -> Plus
chr2L 6271800..6272176 208..583 99 -> Plus
chr2L 6277729..6277834 584..689 100 -> Plus
chr2L 6288815..6289046 690..921 100 -> Plus
chr2L 6290056..6290235 1070..1249 100 -> Plus
chr2L 6290295..6290734 1250..1689 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-16 14:46:46 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
Ddr-RB 1..1143 274..1416 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:34:20 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
Ddr-RD 1..1143 274..1416 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:20:27 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
Ddr-RD 1..1143 274..1416 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-16 14:46:45 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
Ddr-RB 1..1690 1..1689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:34:20 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
Ddr-RD 1..1690 1..1689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:27 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
Ddr-RD 1..1690 1..1689 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:49 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6278679..6278784 584..689 100 -> Plus
2L 6253123..6253329 1..207 100 -> Plus
2L 6272750..6273126 208..583 99 -> Plus
2L 6289765..6289996 690..921 100 -> Plus
2L 6290544..6290691 922..1069 100 -> Plus
2L 6291006..6291185 1070..1249 100 -> Plus
2L 6291245..6291684 1250..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:49 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6278679..6278784 584..689 100 -> Plus
2L 6253123..6253329 1..207 100 -> Plus
2L 6272750..6273126 208..583 99 -> Plus
2L 6289765..6289996 690..921 100 -> Plus
2L 6290544..6290691 922..1069 100 -> Plus
2L 6291006..6291185 1070..1249 100 -> Plus
2L 6291245..6291684 1250..1689 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:02:49 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6278679..6278784 584..689 100 -> Plus
2L 6253123..6253329 1..207 100 -> Plus
2L 6272750..6273126 208..583 99 -> Plus
2L 6289765..6289996 690..921 100 -> Plus
2L 6290544..6290691 922..1069 100 -> Plus
2L 6291006..6291185 1070..1249 100 -> Plus
2L 6291245..6291684 1250..1689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:34:20 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6253123..6253329 1..207 100 -> Plus
arm_2L 6272750..6273126 208..583 99 -> Plus
arm_2L 6278679..6278784 584..689 100 -> Plus
arm_2L 6289765..6289996 690..921 100 -> Plus
arm_2L 6290544..6290691 922..1069 100 -> Plus
arm_2L 6291006..6291185 1070..1249 100 -> Plus
arm_2L 6291245..6291684 1250..1689 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:48:49 Download gff for MIP05449.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6253123..6253329 1..207 100 -> Plus
2L 6272750..6273126 208..583 99 -> Plus
2L 6278679..6278784 584..689 100 -> Plus
2L 6289765..6289996 690..921 100 -> Plus
2L 6290544..6290691 922..1069 100 -> Plus
2L 6291006..6291185 1070..1249 100 -> Plus
2L 6291245..6291684 1250..1689 100   Plus

MIP05449.hyp Sequence

Translation from 273 to 1415

> MIP05449.hyp
MPAIKLQESNSIYSRSECSPTIGVPALVESQGGEGHESRRPATNYLKSYC
RIKRHGVNNSKTLCWLTLTLILLANRFGMGTAVGTPETPAAVGSNGLLAE
MPIGTCKQALGMESGAIADFQITASSAHDMGNVGPQHARLKIDNNGGAWC
PKHMVSRGLTEYLQVDLLGVHLVSAIRTQGRFGKGQGQEYTEAYVIEYWR
PGLKKWIRWRSLQGKEVLPGNINTYSEVENVLQPSVFASKVRLYPYSQYD
RTVCLRAEIVGCAWEEGIVSYSIPKGMQRGMDIDLSDKTYDGYEEGDHYV
NGLGQLVDGQRGKDNFRADINGLGKGYEWIGWRNDTLLGRPVEIIFEFET
VRNLSAVIIHTNNMFSKDVQVNKKLNTKTN*

MIP05449.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
Ddr-PD 380 CG33531-PD 1..380 1..380 2020 100 Plus
Ddr-PG 1054 CG33531-PG 1..371 1..371 1973 100 Plus
Ddr-PF 1054 CG33531-PF 1..371 1..371 1973 100 Plus
CG34380-PE 772 CG34380-PE 75..345 103..371 1195 79 Plus
CG34380-PC 772 CG34380-PC 75..345 103..371 1195 79 Plus

MIP05449.pep Sequence

Translation from 273 to 1415

> MIP05449.pep
MPAIKLQESNSIYSRSECSPTIGVPALVESQGGEGHESRRPATNYLKSYC
RIKRHGVNNSKTLCWLTLTLILLANRFGMGTAVGTPETPAAVGSNGLLAE
MPIGTCKQALGMESGAIADFQITASSAHDMGNVGPQHARLKIDNNGGAWC
PKHMVSRGLTEYLQVDLLGVHLVSAIRTQGRFGKGQGQEYTEAYVIEYWR
PGLKKWIRWRSLQGKEVLPGNINTYSEVENVLQPSVFASKVRLYPYSQYD
RTVCLRAEIVGCAWEEGIVSYSIPKGMQRGMDIDLSDKTYDGYEEGDHYV
NGLGQLVDGQRGKDNFRADINGLGKGYEWIGWRNDTLLGRPVEIIFEFET
VRNLSAVIIHTNNMFSKDVQVNKKLNTKTN*

MIP05449.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14513-PA 917 GF14513-PA 1..366 1..371 1419 71.5 Plus
Dana\GF14510-PA 682 GF14510-PA 1..262 112..371 1193 79.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10400-PA 902 GG10400-PA 1..381 1..371 1876 92.7 Plus
Dere\GG10398-PA 809 GG10398-PA 15..248 140..371 1075 79.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10729-PA 684 GH10729-PA 1..262 112..371 1198 79.8 Plus
Dgri\GH10734-PA 764 GH10734-PA 5..237 139..371 1176 87.6 Plus
Dgri\GH10733-PA 136 GH10733-PA 1..136 1..139 371 61.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ddr-PD 380 CG33531-PD 1..380 1..380 2020 100 Plus
Ddr-PG 1054 CG33531-PG 1..371 1..371 1973 100 Plus
Ddr-PF 1054 CG33531-PF 1..371 1..371 1973 100 Plus
smal-PE 772 CG34380-PE 75..345 103..371 1195 79 Plus
smal-PC 772 CG34380-PC 75..345 103..371 1195 79 Plus
smal-PD 939 CG34380-PD 75..345 103..371 1195 79 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11466-PA 676 GI11466-PA 1..262 112..371 1199 80.5 Plus
Dmoj\GI11477-PA 756 GI11477-PA 1..218 154..371 1095 89.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25514-PA 576 GL25514-PA 1..376 1..371 1427 75.6 Plus
Dper\GL25507-PA 645 GL25507-PA 1..262 112..371 1204 80.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28018-PA 833 GA28018-PA 1..382 1..371 1422 77 Plus
Dpse\GA16357-PA 807 GA16357-PA 82..370 91..371 1240 76.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18617-PA 744 GM18617-PA 136..299 206..371 843 93.4 Plus
Dsec\GM18613-PA 164 GM18613-PA 17..147 140..270 611 81.7 Plus
Dsec\GM18617-PA 744 GM18617-PA 1..119 1..111 517 85.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23398-PA 820 GD23398-PA 1..379 1..371 1958 96 Plus
Dsim\GD23395-PA 822 GD23395-PA 17..250 140..371 1087 80.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12739-PA 871 GJ12739-PA 1..379 1..371 1533 76.5 Plus
Dvir\GJ12700-PA 677 GJ12700-PA 1..262 112..371 1203 80.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14750-PA 926 GK14750-PA 1..388 1..371 1566 76.8 Plus
Dwil\GK14737-PA 688 GK14737-PA 1..262 112..371 1188 79.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13758-PA 801 GE13758-PA 3..297 77..371 1584 98 Plus
Dyak\GE13703-PA 763 GE13703-PA 78..348 103..371 1225 79.7 Plus