Clone Sequence Records
MIP05485.complete Sequence
1777 bp assembled on 2009-02-19
GenBank Submission: BT064639.1
> MIP05485.complete
TCAAAATTTTACCGTTTCCGTCCTGGTTGTCCGTTGGAAAATGCATCGTC
GTTGTATAATCTGTGGCCAGGAGCCGGGCGAGCAGTGCGTCTACCCGCGC
AACATGTCGGAGGCTCGCCGGTGGCAGAACTTGGCCAACCTCAGCAGTTT
TGACGTCGACCCCGAATCGCTATGCCGGCACGGATGCGTTTGCGCCTCCC
ATTTGGATGGCCACGGATCAGGTTCGGAATCGGAGAGCTCGTCTCGTGCT
GCTGGCAGGGCAAGGACTCAAGCTGGCCTGCAGGAATGGAGCAGGTGGAG
CTCTTCGGCATCGGACGCTGGCCATGGCTATTCCATCAGCAAAAAGACTA
ACGAGCGGATCCAGAACCAAAGCAAACAGAGTCTCGGCTCGGAGAGGCAG
GAATTCAGCAGCGCGAACAGATGTACGAATGGTTGCTGTCGTTTTCGAAA
CACCTGCAACAGCATGTTCCAGGGCAATACATACACCCAAATGGGACAGA
AGTATCCCAATCCACAAACAAGGGCCACAAACTTAGAGAACAAAAATAAT
CCACCTATGAAATTAAGCCCAAGGGTAAATAAACCGACCTTTGGAGCTGT
AAACTGCACCTGTGATGGATGCACCTGTAGTTTCTGTCCAGTGCAAGGGA
TCAAAAAAGCGGTAGCCCCTCTAGAAGAGGATTCAGGCAGCCAACAAAGT
ATAAATAAAGAGTATAAAGAAAGAAAGGATAATTCCAAAGGCAGCCCAAA
AAAACAGAGTTCCTGTGAACGTCTCACTTGTCCAGCTTTCAGGACAACGG
ACATAAAAACTGTAGCAGATGATTTCCGCAGTAGCCCGAACTACCCGGTA
TCGCCAACTTCACGAGGTAACAACAAAATTAAAAGTTCGATGAACCAGCA
GAATACGAAGAAAAAGCCGGAGCTGAAGAGCGAATGCTGCCAGACGTGCA
TCACCCAGCAATTGAAGGATCAGGAAGTGCAGTGCTCAACGGTGACGCTG
CAGACTCAGAGCTCTTCGCCTGTTAGGCGAACCAAGATGACCGGCTCGTT
CAGCCATCAAACTGGAAGCTCAGCGACAGGTTTATCTGGCGGATACACCA
ATAATTCGAATAACTTTACTTGTGGCGGCGGCGAGAGAAGAACTTCAAAT
GCAATCAACGTGCTGCTTATGAACGGCACCCGGAATAATGACTATGAAGA
TGGGTGCTGCTCTCCGGCGAAGCAACGTCCCATGGCGCCGCCTCCAGAGA
TTTGCGTTCAAGAGTCCGATCTGACCGAAAATGATGAGCGAGCTGTGTTC
CCGGAAATCGACAAGCCCAATTACAGAGTTTGTCGATCCTCGAACGAGAC
CAATGTTCTGGTCCTGGAGGAGAGTCCTTTGAATGATTGCAGCCCCAACC
CAGGGCAGGATGCGAGTACACTAGATAGCAAGACGAAGAGTAATTTTGAT
GCTCAACAAAACGCCAACGATAATAAAGAGCAACATAATAGTTTTCTAAT
CAACTGGCTTGAGTCCCCGGCCACGAGTAACTTCACCAAGGTTCTGGAAC
TGCAGAGATCTCGCATCAAGGAGCTGGAGAATCTGCTGGAGCAGCACAGC
CTTCTGCAGCAGACAATCCAGCACAAGGTTGCGGAGCTGCAGTGCACAGA
TATACCGGATCCTAAAAATATATCTAAATCATAAACCAAATCTAGTGCGC
ATATCTCTGAATAAATTTTGTTGGTTTTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
MIP05485.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14864-RA | 1746 | CG14864-RA | 18..1746 | 1..1729 | 8645 | 100 | Plus |
| CG14864-RB | 1683 | CG14864-RB | 68..1683 | 69..1684 | 8080 | 100 | Plus |
| Oscp-RA | 1098 | Oscp-RA | 1025..1098 | 1732..1659 | 370 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chr3R | 27901430 | chr3R | 11091314..11093042 | 1729..1 | 8630 | 99.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:04:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15266681..15268412 | 1732..1 | 8660 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 31820162 | 3R | 15007512..15009243 | 1732..1 | 8660 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 20:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 3737..3841 | 1525..1625 | 118 | 66.1 | Plus |
MIP05485.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:13:10 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chr3R | 11091314..11093042 | 1..1729 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:54 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 1..1644 | 41..1684 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:16 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 1..1644 | 41..1684 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:47 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 1..1644 | 41..1684 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:54:40 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 1..1644 | 41..1684 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-19 09:36:57 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 18..1701 | 1..1684 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:16 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 18..1746 | 1..1729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:47 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 18..1746 | 1..1729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:40 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14864-RA | 18..1746 | 1..1729 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:10 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15266684..15268412 | 1..1729 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:10 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15266684..15268412 | 1..1729 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:13:10 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15266684..15268412 | 1..1729 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:47 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11092406..11094134 | 1..1729 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:08:39 Download gff for
MIP05485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15007515..15009243 | 1..1729 | 100 | | Minus |
MIP05485.hyp Sequence
Translation from 0 to 1683
> MIP05485.hyp
QNFTVSVLVVRWKMHRRCIICGQEPGEQCVYPRNMSEARRWQNLANLSSF
DVDPESLCRHGCVCASHLDGHGSGSESESSSRAAGRARTQAGLQEWSRWS
SSASDAGHGYSISKKTNERIQNQSKQSLGSERQEFSSANRCTNGCCRFRN
TCNSMFQGNTYTQMGQKYPNPQTRATNLENKNNPPMKLSPRVNKPTFGAV
NCTCDGCTCSFCPVQGIKKAVAPLEEDSGSQQSINKEYKERKDNSKGSPK
KQSSCERLTCPAFRTTDIKTVADDFRSSPNYPVSPTSRGNNKIKSSMNQQ
NTKKKPELKSECCQTCITQQLKDQEVQCSTVTLQTQSSSPVRRTKMTGSF
SHQTGSSATGLSGGYTNNSNNFTCGGGERRTSNAINVLLMNGTRNNDYED
GCCSPAKQRPMAPPPEICVQESDLTENDERAVFPEIDKPNYRVCRSSNET
NVLVLEESPLNDCSPNPGQDASTLDSKTKSNFDAQQNANDNKEQHNSFLI
NWLESPATSNFTKVLELQRSRIKELENLLEQHSLLQQTIQHKVAELQCTD
IPDPKNISKS*
MIP05485.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14864-PA | 547 | CG14864-PA | 1..547 | 14..560 | 2933 | 100 | Plus |
| CG14864-PB | 526 | CG14864-PB | 1..526 | 35..560 | 2807 | 100 | Plus |
MIP05485.pep Sequence
Translation from 1 to 1683
> MIP05485.pep
QNFTVSVLVVRWKMHRRCIICGQEPGEQCVYPRNMSEARRWQNLANLSSF
DVDPESLCRHGCVCASHLDGHGSGSESESSSRAAGRARTQAGLQEWSRWS
SSASDAGHGYSISKKTNERIQNQSKQSLGSERQEFSSANRCTNGCCRFRN
TCNSMFQGNTYTQMGQKYPNPQTRATNLENKNNPPMKLSPRVNKPTFGAV
NCTCDGCTCSFCPVQGIKKAVAPLEEDSGSQQSINKEYKERKDNSKGSPK
KQSSCERLTCPAFRTTDIKTVADDFRSSPNYPVSPTSRGNNKIKSSMNQQ
NTKKKPELKSECCQTCITQQLKDQEVQCSTVTLQTQSSSPVRRTKMTGSF
SHQTGSSATGLSGGYTNNSNNFTCGGGERRTSNAINVLLMNGTRNNDYED
GCCSPAKQRPMAPPPEICVQESDLTENDERAVFPEIDKPNYRVCRSSNET
NVLVLEESPLNDCSPNPGQDASTLDSKTKSNFDAQQNANDNKEQHNSFLI
NWLESPATSNFTKVLELQRSRIKELENLLEQHSLLQQTIQHKVAELQCTD
IPDPKNISKS*
MIP05485.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\GF11758-PA | 636 | GF11758-PA | 358..630 | 309..550 | 371 | 38.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dere\GG20748-PA | 439 | GG20748-PA | 89..439 | 227..560 | 1283 | 73.5 | Plus |
| Dere\GG20748-PA | 439 | GG20748-PA | 1..154 | 14..176 | 564 | 77.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14864-PA | 547 | CG14864-PA | 1..547 | 14..560 | 2933 | 100 | Plus |
| CG14864-PB | 526 | CG14864-PB | 1..526 | 35..560 | 2807 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dper\GL12070-PA | 659 | GL12070-PA | 437..619 | 373..547 | 242 | 38.5 | Plus |
| Dper\GL12070-PA | 659 | GL12070-PA | 1..58 | 14..71 | 157 | 48.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpse\GA13303-PA | 659 | GA13303-PA | 437..619 | 373..547 | 248 | 39.1 | Plus |
| Dpse\GA13303-PA | 659 | GA13303-PA | 1..58 | 14..71 | 157 | 48.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsec\GM25791-PA | 547 | GM25791-PA | 1..547 | 14..560 | 2525 | 88.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\GD20367-PA | 462 | GD20367-PA | 1..454 | 14..465 | 2092 | 89.9 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\GK13491-PA | 603 | GK13491-PA | 353..562 | 379..548 | 230 | 33.2 | Plus |
| Dwil\GK13491-PA | 603 | GK13491-PA | 1..80 | 14..93 | 199 | 45 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:05:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyak\GE26396-PA | 540 | GE26396-PA | 1..540 | 14..560 | 2038 | 76.8 | Plus |
