Clone MIP05494 Report

Search the DGRC for MIP05494

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:54
Well:94
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG1315-RA
Protein status:MIP05494.pep: gold
Sequenced Size:1434

Clone Sequence Records

MIP05494.complete Sequence

1434 bp assembled on 2009-02-18

GenBank Submission: BT060440.1

> MIP05494.complete
GTAGTATTTTTTGCACAACCGTGACAAGTGGACGGGCATCCGAGAAATAT
GCCTAAGGAAACCGTAATTTTGGCTTACTCCGGTGGCCTGGACACTAGTT
GCGTCCTCAAGTGGTTGCTGGACAAGCAGTATGAGGTCATTTGCGTCCTG
GCCGATGTAGGCCAGAAGGAAGATTTCACCGCCGCCGAGAAGAAGGCTCT
TAAGATTGGCGCAAAAAAGGTTATCGTGGCCGATGTCAAGCAGTCCTTCG
TCGAGGACTATATCTGGCCGGCCGTACAAATGGGTCTGGTGTACGAGGAG
CGCTATCTACTGGGCACTTCTCTGGCCAGGCCCTGCATCAGTGTAGCCCT
GATGGAGGTCGCCCGCGAGTATGGAGCCAAGTATCTGGCCCACGGAGCCA
CCGGAAAGGGAAACGACCAGGTGCGCTTCGAGTTGTGCGCCTACGCCCTG
AAACCGGATCTGAAGATCATCGCTCCCTGGAGGGATGTAGAATTCTGCTG
CCAGTTTCAAGGTCGACAGGACCTCATTGCCTATGCCCAGCAACACGGAA
TCGAGGTAAGCGCCAAGCCAGCCACACCCTGGAGCACCGATGCCAACATC
CTGCACATCAGCTACGAGTCCGGAATACTCGAAGATCCCAACACAGTGGC
TCCGGAAAATCTCTACGAGATGACAGTCGATCCCCTGACAAGGGCTCCAC
GGGATCCGGTTCACTTGGTCATTCAATTTGATCGGGGACTGCCCTCCAGT
GTGGAGGATTTGCCCGGCGGTCGGGTCTACACTAAACCCCTGGAGATGCT
AGATTTCCTCAATAAGCTTGGCGGATCATATGGCATTGGGCGGATTGACA
TCGTGGAAAATCGCTTTGTGGGACTGAAGTCCCGGGGGGTGTACGAGACG
CCTGGAGGCACCATCCTCTTTGCTGCCCACCAGGACCTCGAGGTGTTTGC
TTTGGACCGCGAAGTACTCCGCACCAAGCAGGTTCTCCGGGATCGCATGG
CCGACTACGTGTACAATGGCTTCTGGTTCAGTCCCGAGGCAATTTATGCC
CGTAAATGTATCGAGTTGGCCGAGCAGCGGGTCTCCGGGAAGGTCACCGT
GGAACTGGCCCCAGGCTATTGCCGTGCCATCGCCCGAAAGGCGGCGAAGG
ATGTGGGAGCTCTTTACAACGAACAGCTCGTATCTATGGACGTCCATGGT
GGCTATGTGCCGCAGGATGCCGGTGGATTTATCGCCATCAATGCGGTCCG
AATCAGGGAACATGTCCGAGCGTTCGGTGCCTACGATGTGCCAACGAAGA
AAAACTGAACGAAAAAGATAGAATTAATTAAAATGTCATACTTTTGTTTT
TGTGTTTACCTTAAAAACGTTTATGCATACATATATAATACATACACATT
TATAATGACAAAAAAAAAAAAAAAAAAAAAAAAA

MIP05494.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1315.a 1493 CG1315.a 1..1387 27..1413 6920 99.9 Plus
CG1315-RA 1331 CG1315-RA 1..1331 8..1338 6655 100 Plus
CG31286-RB 1945 CG31286-RB 1009..1851 1306..464 4215 100 Minus
CG31286-RB 1945 CG31286-RB 957..1010 1413..1360 255 98.1 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2468102..2469047 1409..464 4730 100 Minus
chr3R 27901430 chr3R 2469657..2469904 465..218 1240 100 Minus
chr3R 27901430 chr3R 2470006..2470227 222..1 1095 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:05:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6642305..6643254 1413..464 4735 99.9 Minus
3R 32079331 3R 6643864..6644111 465..218 1240 100 Minus
3R 32079331 3R 6644213..6644434 222..1 1110 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6383136..6384085 1413..464 4735 99.8 Minus
3R 31820162 3R 6384695..6384942 465..218 1240 100 Minus
3R 31820162 3R 6385044..6385265 222..1 1110 100 Minus
Blast to na_te.dros performed 2019-03-15 20:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 3584..3687 1406..1309 118 61.5 Minus

MIP05494.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:25:38 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2470009..2470227 1..219 99   Minus
chr3R 2469657..2469902 220..465 100 <- Minus
chr3R 2468102..2469045 466..1409 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:50 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1315-RA 1..1260 49..1308 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:09 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1315-RA 1..1260 49..1308 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:52:40 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1315-RA 1..1260 49..1308 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:37 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1315-RA 1..1260 49..1308 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-18 12:32:57 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1315-RA 1..1274 35..1308 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:08 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1315-RA 1..1409 1..1409 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:40 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1315-RA 1..1409 1..1409 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:37 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
CG1315-RA 1..1409 1..1409 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:38 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6642309..6643252 466..1409 100 <- Minus
3R 6643864..6644109 220..465 100 <- Minus
3R 6644216..6644434 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:38 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6642309..6643252 466..1409 100 <- Minus
3R 6643864..6644109 220..465 100 <- Minus
3R 6644216..6644434 1..219 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:25:38 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6642309..6643252 466..1409 100 <- Minus
3R 6643864..6644109 220..465 100 <- Minus
3R 6644216..6644434 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:40 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2468031..2468974 466..1409 100 <- Minus
arm_3R 2469586..2469831 220..465 100 <- Minus
arm_3R 2469938..2470156 1..219 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:08:30 Download gff for MIP05494.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6384695..6384940 220..465 100 <- Minus
3R 6385047..6385265 1..219 100   Minus
3R 6383140..6384083 466..1409 100 <- Minus

MIP05494.pep Sequence

Translation from 48 to 1307

> MIP05494.pep
MPKETVILAYSGGLDTSCVLKWLLDKQYEVICVLADVGQKEDFTAAEKKA
LKIGAKKVIVADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISVA
LMEVAREYGAKYLAHGATGKGNDQVRFELCAYALKPDLKIIAPWRDVEFC
CQFQGRQDLIAYAQQHGIEVSAKPATPWSTDANILHISYESGILEDPNTV
APENLYEMTVDPLTRAPRDPVHLVIQFDRGLPSSVEDLPGGRVYTKPLEM
LDFLNKLGGSYGIGRIDIVENRFVGLKSRGVYETPGGTILFAAHQDLEVF
ALDREVLRTKQVLRDRMADYVYNGFWFSPEAIYARKCIELAEQRVSGKVT
VELAPGYCRAIARKAAKDVGALYNEQLVSMDVHGGYVPQDAGGFIAINAV
RIREHVRAFGAYDVPTKKN*

MIP05494.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16645-PA 443 GF16645-PA 25..443 1..419 1955 85.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10357-PA 419 GG10357-PA 1..419 1..419 2122 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17302-PA 420 GH17302-PA 1..418 1..418 1838 80.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ass-PB 419 CG1315-PB 1..419 1..419 2184 100 Plus
Ass-PA 419 CG1315-PA 1..419 1..419 2184 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10264-PA 417 GI10264-PA 1..414 1..414 1812 80.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22056-PA 419 GL22056-PA 1..414 1..414 1926 86 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12079-PA 419 GA12079-PA 1..414 1..414 1925 86 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10539-PA 400 GM10539-PA 1..400 1..419 1995 90.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19536-PA 419 GD19536-PA 1..419 1..419 2171 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11071-PA 417 GJ11071-PA 1..412 1..412 1842 80.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25842-PA 419 GE25842-PA 1..419 1..419 2132 95 Plus
Dyak\GE24091-PA 175 GE24091-PA 84..163 295..391 371 75.3 Plus

MIP05494.hyp Sequence

Translation from 48 to 1307

> MIP05494.hyp
MPKETVILAYSGGLDTSCVLKWLLDKQYEVICVLADVGQKEDFTAAEKKA
LKIGAKKVIVADVKQSFVEDYIWPAVQMGLVYEERYLLGTSLARPCISVA
LMEVAREYGAKYLAHGATGKGNDQVRFELCAYALKPDLKIIAPWRDVEFC
CQFQGRQDLIAYAQQHGIEVSAKPATPWSTDANILHISYESGILEDPNTV
APENLYEMTVDPLTRAPRDPVHLVIQFDRGLPSSVEDLPGGRVYTKPLEM
LDFLNKLGGSYGIGRIDIVENRFVGLKSRGVYETPGGTILFAAHQDLEVF
ALDREVLRTKQVLRDRMADYVYNGFWFSPEAIYARKCIELAEQRVSGKVT
VELAPGYCRAIARKAAKDVGALYNEQLVSMDVHGGYVPQDAGGFIAINAV
RIREHVRAFGAYDVPTKKN*

MIP05494.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1315-PB 419 CG1315-PB 1..419 1..419 2184 100 Plus
CG1315-PA 419 CG1315-PA 1..419 1..419 2184 100 Plus