Clone MIP05619 Report

Search the DGRC for MIP05619

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:56
Well:19
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG8270-RB
Protein status:MIP05619.pep: gold
Sequenced Size:2141

Clone Sequence Records

MIP05619.complete Sequence

2141 bp assembled on 2009-02-18

GenBank Submission: BT060441.1

> MIP05619.complete
CAGTTTGTTATTTATTTTTTTCCAGCACAACAATGGATAATTCCAATGGA
ATCCACTACATTGAGCTAACCCCAAATCCCATACGATTTGATGCTGTCAG
CCAACTAACCAATGTGTTTTTCGATGACTCCAACAAGCAGATATTTGCTG
TTCGGTCTGGAGGAGCTACTGGTGTGGTGGTCAAAGGTCCTGGATCTCCC
GACGATGTCGTCATCTCCTTTTGCATGAGCGACCGTGGCGGTGCCATAAG
GTCCATTAAGTTCTCGCCGGACAACCAAATCTTGGCCGTTCAGCGAAAGG
AGAATTCCGTGGAGTTCATATGTTTTCAGGGAGATCAGCCTCTGCTGCAG
GACATCATTACCCACCAGGTGAAGACTCTGATCCATGGCTTTGTTTGGGT
CCACAATCGGGAGGTGGCCCTGATTTCGAATACCGGCGTGGAGGTCTACA
CCGTAGTTCCTGAGAAGCGACAGGTGCGCTCTGTGAAATCCCTGAGCATT
GGCATCAAGTGGTTCGCCTGGTGCTGCGATGCCAATGTGGCTCTACTGTG
CACCAGCGAAGGAAACTCCCTGATTCCGGTGCTGGTCAAGCAGAAAGTAA
TCACCAAGCTGCCCAAAGTGGACTTGGGCAATCCAAGTCGCGATGTCCAG
GAGAGCAAGGTCACCTTAGGCCAAGTTTACGGCGTGCTGGCTGTGCTTAT
CCTCCAGTCAAATAGCACCACCGGACTGATGGAAGTCGAGGTGCACTTGC
TCAATGGACCGGGCTTGGCTCCACGCAAGTGCCATGTGCTCCGCTTAAGT
CTGCTTGGTCGCTTCGCCATCAACACGGTGGATAATCTGATTGTGGTGCA
CCATCAAGCTTCGGGCACTTCGCTGCTATTCGACATCTCCCTGCCCGGAG
AGGTGATCAATGAAATAACCTATCATACACCCATAACTCCAGGGCGCTCC
ATCAAACCGTTTGGCCTGAAACTGCCCTCACTTTCGCCTGATGGACAAAT
CTTGCAGTGCGAGTTGTATTCCACGCACTGGGTACTGTTCCAGCCAAATA
TTGTAATCGATGCCAAGTTGGGTTGCATGTGGTTTTTGAACCTCTGCATT
GAACCATTGTGCCAACTGATTTCGGATCGCATTCGACTTACAGAATTCCT
GCTGCAACGCAGCAATGGCAAGCAGATGCTATTAAAAGTCATTGGACAAT
TGGTAGATGATCAGTATAAGGGAACTCTATTGCCAGTCCTAGAGACCATC
TTCAGTCGGATTAACAAGATCTATGCGTCTTGGGTCCAGTTGGAGCTGCA
AAATCAAACCGCTCAACCGTCGAACGTAAAAACTACTACCCTGAAACAGA
GCACACCGCCCATTGTGCTCATTGAGCAACTGGATATGGTGCAAATCTTT
CAGCGCATAGCTCGTCGCCCGTACACGGAATCCATATTGATGCTCTACCT
GCAATCCCTGAACAAGTTCAACATTGCCGCCCAGGAGGAGCTGAGCAAGA
TGATCATCAGCGAGCTGATCTCCAATCGCAGCTTCGACACCTTGCGACGC
TTGGTCAGCTATTCAATGCTGCTGGAATCCAAGTCGGTGGCTTGCTTTTT
GTTGTCGCATTCAAATGTGGATACGGCGATATCCCAGGTGGCCATCGATA
TGCTGGGCAGGATTGAAGCACATGAGATCATCATTGAAGTAATGCTGGGT
CAAGGCAAAGTTATTGATGCCTTAAGGCTGGCTAAGAATTCAATGGGTCT
GGAAAAAGTGCCAGCTCGCAAGTTTCTGGAGGCGGCTCATAAGACAAAGG
ATGATCTAATATTCCACAGCGTATACCGCTTTTTCCAAATGAGAAACCTG
AAACTTTATGAAACCCTATCTTTTCCCAAGGCTGAACAATGCACGGAATT
CATACAGCATTATAATAACACTTTTCCTGCTGATAATCCTACCAGACAGC
CTGTAAGCTAAAGGAAAAATGGCAATTTGTGATTAATATAATTTAAAGTG
TGCTTTAGAAAGTATAAACATACTGAAGTATAAACATACTTTTGTATTGA
ATTGTAAATATATCCAATTGAAATGATGATCATTTTATACGAAAGTAAAG
GAATGACTCAAACAAGAACCATAAAAAAAAAAAAAAAAAAA

MIP05619.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8270.a 2186 CG8270.a 60..2186 1..2127 10620 99.9 Plus
CG8270-RA 2089 CG8270-RA 54..1934 1..1881 9390 99.9 Plus
CG8270-RA 2089 CG8270-RA 2000..2089 1881..1970 450 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6481375..6481860 139..624 2280 97.9 Plus
chr3L 24539361 chr3L 6482686..6483085 1277..1676 1955 99.2 Plus
chr3L 24539361 chr3L 6481917..6482309 625..1017 1860 98.2 Plus
chr3L 24539361 chr3L 6482365..6482625 1018..1278 1290 99.6 Plus
chr3L 24539361 chr3L 6483416..6483657 1881..2122 1195 99.6 Plus
chr3L 24539361 chr3L 6483144..6483350 1675..1881 1005 99 Plus
chr3L 24539361 chr3L 6481175..6481319 1..144 660 98.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:05:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6488928..6489413 139..624 2415 99.8 Plus
3L 28110227 3L 6490239..6490638 1277..1676 2000 100 Plus
3L 28110227 3L 6489470..6489862 625..1017 1965 100 Plus
3L 28110227 3L 6489918..6490178 1018..1278 1305 100 Plus
3L 28110227 3L 6490969..6491215 1881..2127 1235 100 Plus
3L 28110227 3L 6490697..6490903 1675..1881 1035 100 Plus
3L 28110227 3L 6488729..6488872 1..144 705 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6482028..6482513 139..624 2415 99.7 Plus
3L 28103327 3L 6483339..6483738 1277..1676 2000 100 Plus
3L 28103327 3L 6482570..6482962 625..1017 1965 100 Plus
3L 28103327 3L 6483018..6483278 1018..1278 1305 100 Plus
3L 28103327 3L 6484069..6484315 1881..2127 1235 100 Plus
3L 28103327 3L 6483797..6484003 1675..1881 1035 100 Plus
3L 28103327 3L 6481829..6481972 1..144 705 99.3 Plus
Blast to na_te.dros performed 2019-03-16 09:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 10180..10291 2077..1962 129 60.7 Minus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3480..3545 2010..2075 123 65.2 Plus

MIP05619.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:27:06 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6481175..6481315 1..140 99 -> Plus
chr3L 6481377..6481860 141..624 97 -> Plus
chr3L 6481917..6482309 625..1017 98 -> Plus
chr3L 6482365..6482623 1018..1276 99 -> Plus
chr3L 6482686..6483085 1277..1676 99 -> Plus
chr3L 6483146..6483350 1677..1881 99 -> Plus
chr3L 6483417..6483657 1882..2122 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:49 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RA 1..1859 33..1890 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:06 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 1..1929 33..1961 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:01:11 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 1..1929 33..1961 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:55 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 1..1929 33..1961 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-18 12:10:05 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RA 54..1944 1..1890 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:06 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 54..2175 1..2122 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:01:11 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 49..2170 1..2122 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:55 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
CG8270-RB 49..2170 1..2122 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:06 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6490970..6491210 1882..2122 100   Plus
3L 6488729..6488868 1..140 100 -> Plus
3L 6488930..6489413 141..624 99 -> Plus
3L 6489470..6489862 625..1017 100 -> Plus
3L 6489918..6490176 1018..1276 100 -> Plus
3L 6490239..6490638 1277..1676 100 -> Plus
3L 6490699..6490903 1677..1881 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:06 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6490970..6491210 1882..2122 100   Plus
3L 6488729..6488868 1..140 100 -> Plus
3L 6488930..6489413 141..624 99 -> Plus
3L 6489470..6489862 625..1017 100 -> Plus
3L 6489918..6490176 1018..1276 100 -> Plus
3L 6490239..6490638 1277..1676 100 -> Plus
3L 6490699..6490903 1677..1881 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:27:06 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6490970..6491210 1882..2122 100   Plus
3L 6488729..6488868 1..140 100 -> Plus
3L 6488930..6489413 141..624 99 -> Plus
3L 6489470..6489862 625..1017 100 -> Plus
3L 6489918..6490176 1018..1276 100 -> Plus
3L 6490239..6490638 1277..1676 100 -> Plus
3L 6490699..6490903 1677..1881 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:01:11 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6481829..6481968 1..140 100 -> Plus
arm_3L 6482030..6482513 141..624 99 -> Plus
arm_3L 6482570..6482962 625..1017 100 -> Plus
arm_3L 6483018..6483276 1018..1276 100 -> Plus
arm_3L 6483339..6483738 1277..1676 100 -> Plus
arm_3L 6483799..6484003 1677..1881 100 -> Plus
arm_3L 6484070..6484310 1882..2122 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:08:27 Download gff for MIP05619.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6482030..6482513 141..624 99 -> Plus
3L 6482570..6482962 625..1017 100 -> Plus
3L 6483018..6483276 1018..1276 100 -> Plus
3L 6483339..6483738 1277..1676 100 -> Plus
3L 6483799..6484003 1677..1881 100 -> Plus
3L 6484070..6484310 1882..2122 100   Plus
3L 6481829..6481968 1..140 100 -> Plus

MIP05619.hyp Sequence

Translation from 2 to 1960

> MIP05619.hyp
VCYLFFSSTTMDNSNGIHYIELTPNPIRFDAVSQLTNVFFDDSNKQIFAV
RSGGATGVVVKGPGSPDDVVISFCMSDRGGAIRSIKFSPDNQILAVQRKE
NSVEFICFQGDQPLLQDIITHQVKTLIHGFVWVHNREVALISNTGVEVYT
VVPEKRQVRSVKSLSIGIKWFAWCCDANVALLCTSEGNSLIPVLVKQKVI
TKLPKVDLGNPSRDVQESKVTLGQVYGVLAVLILQSNSTTGLMEVEVHLL
NGPGLAPRKCHVLRLSLLGRFAINTVDNLIVVHHQASGTSLLFDISLPGE
VINEITYHTPITPGRSIKPFGLKLPSLSPDGQILQCELYSTHWVLFQPNI
VIDAKLGCMWFLNLCIEPLCQLISDRIRLTEFLLQRSNGKQMLLKVIGQL
VDDQYKGTLLPVLETIFSRINKIYASWVQLELQNQTAQPSNVKTTTLKQS
TPPIVLIEQLDMVQIFQRIARRPYTESILMLYLQSLNKFNIAAQEELSKM
IISELISNRSFDTLRRLVSYSMLLESKSVACFLLSHSNVDTAISQVAIDM
LGRIEAHEIIIEVMLGQGKVIDALRLAKNSMGLEKVPARKFLEAAHKTKD
DLIFHSVYRFFQMRNLKLYETLSFPKAEQCTEFIQHYNNTFPADNPTRQP
VS*

MIP05619.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8270-PB 642 CG8270-PB 1..642 11..652 3280 100 Plus

MIP05619.pep Sequence

Translation from 2 to 1960

> MIP05619.pep
VCYLFFSSTTMDNSNGIHYIELTPNPIRFDAVSQLTNVFFDDSNKQIFAV
RSGGATGVVVKGPGSPDDVVISFCMSDRGGAIRSIKFSPDNQILAVQRKE
NSVEFICFQGDQPLLQDIITHQVKTLIHGFVWVHNREVALISNTGVEVYT
VVPEKRQVRSVKSLSIGIKWFAWCCDANVALLCTSEGNSLIPVLVKQKVI
TKLPKVDLGNPSRDVQESKVTLGQVYGVLAVLILQSNSTTGLMEVEVHLL
NGPGLAPRKCHVLRLSLLGRFAINTVDNLIVVHHQASGTSLLFDISLPGE
VINEITYHTPITPGRSIKPFGLKLPSLSPDGQILQCELYSTHWVLFQPNI
VIDAKLGCMWFLNLCIEPLCQLISDRIRLTEFLLQRSNGKQMLLKVIGQL
VDDQYKGTLLPVLETIFSRINKIYASWVQLELQNQTAQPSNVKTTTLKQS
TPPIVLIEQLDMVQIFQRIARRPYTESILMLYLQSLNKFNIAAQEELSKM
IISELISNRSFDTLRRLVSYSMLLESKSVACFLLSHSNVDTAISQVAIDM
LGRIEAHEIIIEVMLGQGKVIDALRLAKNSMGLEKVPARKFLEAAHKTKD
DLIFHSVYRFFQMRNLKLYETLSFPKAEQCTEFIQHYNNTFPADNPTRQP
VS*

MIP05619.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23537-PA 642 GF23537-PA 1..638 11..648 3074 88.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15345-PA 642 GG15345-PA 1..642 11..652 3334 96.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15161-PA 640 GH15161-PA 1..640 11..652 2916 83.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8270-PB 642 CG8270-PB 1..642 11..652 3280 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12100-PA 640 GI12100-PA 1..636 11..648 2969 85 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22580-PA 642 GL22580-PA 1..642 11..652 3141 89.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20944-PA 642 GA20944-PA 1..642 11..652 3141 89.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14786-PA 642 GM14786-PA 1..642 11..652 3390 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13958-PA 616 GD13958-PA 1..616 11..652 3192 94.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13375-PA 640 GJ13375-PA 1..640 11..652 3033 86.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11164-PA 644 GK11164-PA 3..644 12..652 3040 87.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21564-PA 642 GE21564-PA 1..642 11..652 3375 97.8 Plus