Clone MIP05652 Report

Search the DGRC for MIP05652

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:56
Well:52
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptGalphaf-RA
Protein status:MIP05652.pep: gold
Sequenced Size:1829

Clone Sequence Records

MIP05652.complete Sequence

1829 bp assembled on 2009-02-19

GenBank Submission: BT064643.1

> MIP05652.complete
ATAAAACGGTGTTAGACGTATTCCGGCAGGAAAAAAAAAACAACAGGGAA
CCCTGAATCACAGGCAAGAGCTGAAAGTTCAGTGATACAGACAAATGGAT
ATTATTATAGCAGTGACAAGAACTCAAGTGCTCGATAAACACATTCCCGG
CCAAAGAAAACAGAAACTCAGTGGAATCCAAAGTATTTAATAACAAATTG
TGTGTGTGTGTGTGCCAGTGAACAGAGCTAGCAGCAAGTGTATAAACAAG
ACGTCAGAAGTTTCCACTTAACCAAGGCATAATCGATCGGCCACAATTGG
TACAACATTCAGAACCATGAAATTAAGACTTTTGCGGTGTTTGCGCCAAC
AGCCGGCGAAACCAGCGGCGGTTATGACCCACAAGGAGGATCAGTACCCG
GTATCACTTGACCACCACGTGCTCAAGGACATGGCCAAGGGCGTGAGGGA
CACCACCGTTAAGATCCTGCTACTAGGCACCGCCGAGTCGGGCAAGACGA
CCATCATCAAGCAAATGCGGATACTGCACATCAACGGATTTACAGACGAT
GAACGGCGAGAGAAGATACCCGAGATATATCAGAACATCCACGAGTCCAT
CCTGCAATTGGTGGGTCAGATGGGAGTGCTGGGCATTGATTTCGGCAGCT
GTACCAGCGAAAGATCGGCGGACTATATCCTCTCTCTGCCCGGATCGGCA
CCCGAATATATGAACGAGGAGTACTGCGACCACGTCACTACTTTGTGGAA
CGATGTGGGTATTCGCGCCTGCTATGATCGCTCAAATGAGTTTCCCCTGC
TGGATAGTGCGAAATACTTCCTGGACAACTTTGTGCGGATCAGCGATGCT
GAATACATACCCAGCACCGAGGACATTCTGCACAGCCGTAAGATCACCAC
CGGCATCTCGCAAATCACCTTCCGCGTACCCATTCCCAAGAGCATGGGTG
GTGGCGAACAGCAGTTCCAAATGTACGATGTGGGTGGCCAAAGGGATCAG
CGGAATAAGTGGATTCAGGTATTCGAAGGCATACAGGCCGTATTGTTCCT
GATCTCGTGCAGCGAGTTCGATCAGAATCTGCGCGAGGATCCCAGCCAGA
ATCGTTTGCAGGAGGCTCTGAAGTTGTTCAGAGCCGTGTGGCAGAATCGT
TTCCTCGCCTCCGCCGGATTGATCGTGTTCCTCAACAAGTACGACATCAT
GGAGCGAAAGATTCGGGCCGGCAAGCACATTGTGGACTACTTTCCCGAAT
ACGAGGACTTCTGCAAGAGGCCGCAGCAGGACAATTGCTTTGGCGAGAGT
GACTGGACGAAGATGTTCATCAAACAGAAGCTGGTGGATATCACACAGGA
GCCGTTCAAGCGACACTCACGGAATCAGGTGGATCTGGGTACCTCGGAAA
GGGAGTGCTACTACCACTTCACCGTCGCCACGGATACGCGATGCATCCGT
GATGTCTTCTGCGATGTCCAGAAGATGATCCTCTCGGAGAACGTGTCCAG
CATGGGCCTATTCTAGTCCAGATCCCGTTGCGGATCGGAGAGCTTCTCAA
TAAAGTTAAGGGAGGGCTGTCCTCAGGCCCCCACCAACTGTGATCTAGTA
GGATATGACTTACATAAGTAGCCATGTAAGACCGTAGATCGTAGTGGCAA
CCGTATGTTGCACAATGGCTGGTACAACGCTTTAATATATTTAACTGCAT
TGGGTGTAGAGGAAGAATCCTCATACCGAATGCTCTCACTACTCCTTCAA
CCAATGTCTAAACTCTAATAGAATATAGCATCTACAATAAACCAAAACAC
ACCCAGACAAAAAAAAAAAAAAAAAAAAA

MIP05652.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Galpha73B-RA 1958 Galpha73B-RA 53..1862 1..1810 9050 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16652310..16653301 1808..817 4900 99.6 Minus
chr3L 24539361 chr3L 16657341..16657664 327..1 1490 98.5 Minus
chr3L 24539361 chr3L 16654829..16655052 549..326 1120 100 Minus
chr3L 24539361 chr3L 16654493..16654662 719..550 835 99.4 Minus
chr3L 24539361 chr3L 16653395..16653494 816..717 500 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:05:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16662555..16663548 1810..817 4970 100 Minus
3L 28110227 3L 16667591..16667917 327..1 1635 100 Minus
3L 28110227 3L 16665080..16665303 549..326 1120 100 Minus
3L 28110227 3L 16664740..16664909 719..550 850 100 Minus
3L 28110227 3L 16663642..16663741 816..717 500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16655655..16656648 1810..817 4970 100 Minus
3L 28103327 3L 16660691..16661017 327..1 1635 100 Minus
3L 28103327 3L 16658180..16658403 549..326 1120 100 Minus
3L 28103327 3L 16657840..16658009 719..550 850 100 Minus
3L 28103327 3L 16656742..16656841 816..717 500 100 Minus
Blast to na_te.dros performed on 2019-03-17 00:07:47 has no hits.

MIP05652.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:08:26 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16652310..16653301 817..1808 99 <- Minus
chr3L 16653395..16653492 719..816 100 <- Minus
chr3L 16654494..16654662 550..718 99 <- Minus
chr3L 16654829..16655050 328..549 100 <- Minus
chr3L 16657341..16657664 1..327 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:58 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
Galpha73B-RA 1..1200 317..1516 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:24 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
Galpha73B-RA 1..1200 317..1516 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:31:07 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
Galphaf-RA 1..1200 317..1516 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:13:18 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
Galphaf-RA 1..1200 317..1516 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-19 10:52:34 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
Galpha73B-RA 1..1805 4..1808 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:24 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
Galpha73B-RA 1..1805 4..1808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:07 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
Galphaf-RA 18..1825 1..1808 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:18 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
Galphaf-RA 18..1825 1..1808 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:26 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16664741..16664909 550..718 100 <- Minus
3L 16662557..16663548 817..1808 100 <- Minus
3L 16663642..16663739 719..816 100 <- Minus
3L 16665080..16665301 328..549 100 <- Minus
3L 16667591..16667917 1..327 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:26 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16664741..16664909 550..718 100 <- Minus
3L 16662557..16663548 817..1808 100 <- Minus
3L 16663642..16663739 719..816 100 <- Minus
3L 16665080..16665301 328..549 100 <- Minus
3L 16667591..16667917 1..327 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:08:26 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16664741..16664909 550..718 100 <- Minus
3L 16662557..16663548 817..1808 100 <- Minus
3L 16663642..16663739 719..816 100 <- Minus
3L 16665080..16665301 328..549 100 <- Minus
3L 16667591..16667917 1..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:07 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16656742..16656839 719..816 100 <- Minus
arm_3L 16657841..16658009 550..718 100 <- Minus
arm_3L 16658180..16658401 328..549 100 <- Minus
arm_3L 16655657..16656648 817..1808 100 <- Minus
arm_3L 16660691..16661017 1..327 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:08:49 Download gff for MIP05652.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16657841..16658009 550..718 100 <- Minus
3L 16658180..16658401 328..549 100 <- Minus
3L 16656742..16656839 719..816 100 <- Minus
3L 16660691..16661017 1..327 100   Minus
3L 16655657..16656648 817..1808 100 <- Minus

MIP05652.hyp Sequence

Translation from 316 to 1515

> MIP05652.hyp
MKLRLLRCLRQQPAKPAAVMTHKEDQYPVSLDHHVLKDMAKGVRDTTVKI
LLLGTAESGKTTIIKQMRILHINGFTDDERREKIPEIYQNIHESILQLVG
QMGVLGIDFGSCTSERSADYILSLPGSAPEYMNEEYCDHVTTLWNDVGIR
ACYDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTGISQI
TFRVPIPKSMGGGEQQFQMYDVGGQRDQRNKWIQVFEGIQAVLFLISCSE
FDQNLREDPSQNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIR
AGKHIVDYFPEYEDFCKRPQQDNCFGESDWTKMFIKQKLVDITQEPFKRH
SRNQVDLGTSERECYYHFTVATDTRCIRDVFCDVQKMILSENVSSMGLF*

MIP05652.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
Galphaf-PA 399 CG12232-PA 1..399 1..399 2103 100 Plus
Galphas-PD 385 CG2835-PD 43..374 47..388 651 40 Plus
Galphas-PB 385 CG2835-PB 43..374 47..388 651 40 Plus
Galphaq-PD 353 CG17759-PD 15..352 31..398 647 37.3 Plus
Galphas-PE 382 CG2835-PE 43..371 47..388 646 39.4 Plus

MIP05652.pep Sequence

Translation from 316 to 1515

> MIP05652.pep
MKLRLLRCLRQQPAKPAAVMTHKEDQYPVSLDHHVLKDMAKGVRDTTVKI
LLLGTAESGKTTIIKQMRILHINGFTDDERREKIPEIYQNIHESILQLVG
QMGVLGIDFGSCTSERSADYILSLPGSAPEYMNEEYCDHVTTLWNDVGIR
ACYDRSNEFPLLDSAKYFLDNFVRISDAEYIPSTEDILHSRKITTGISQI
TFRVPIPKSMGGGEQQFQMYDVGGQRDQRNKWIQVFEGIQAVLFLISCSE
FDQNLREDPSQNRLQEALKLFRAVWQNRFLASAGLIVFLNKYDIMERKIR
AGKHIVDYFPEYEDFCKRPQQDNCFGESDWTKMFIKQKLVDITQEPFKRH
SRNQVDLGTSERECYYHFTVATDTRCIRDVFCDVQKMILSENVSSMGLF*

MIP05652.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10510-PA 400 GF10510-PA 1..400 1..399 1895 88.5 Plus
Dana\GF12878-PA 382 GF12878-PA 42..371 46..388 628 39.4 Plus
Dana\GF13398-PA 432 GF13398-PA 15..431 31..398 595 33.8 Plus
Dana\GF13765-PA 354 GF13765-PA 19..354 31..399 568 35 Plus
Dana\GF10879-PA 355 GF10879-PA 26..355 40..399 516 34 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15859-PA 399 GG15859-PA 1..399 1..399 2124 97.5 Plus
Dere\GG22906-PA 385 GG22906-PA 42..374 46..388 630 39.9 Plus
Dere\GG20320-PA 432 GG20320-PA 15..431 31..398 597 33.6 Plus
Dere\GG24169-PA 354 GG24169-PA 14..354 26..399 572 34.8 Plus
Dere\GG20323-PA 356 GG20323-PA 22..356 31..399 569 34.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15230-PA 397 GH15230-PA 1..397 1..399 1683 79.6 Plus
Dgri\GH21190-PA 353 GH21190-PA 15..352 31..398 635 37.6 Plus
Dgri\GH21696-PA 382 GH21696-PA 42..371 46..388 626 39.1 Plus
Dgri\GH21191-PA 352 GH21191-PA 34..351 48..398 607 36.8 Plus
Dgri\GH21256-PA 354 GH21256-PA 34..354 48..399 569 35.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Galphaf-PA 399 CG12232-PA 1..399 1..399 2103 100 Plus
Galphas-PD 385 CG2835-PD 43..374 47..388 651 40 Plus
Galphas-PB 385 CG2835-PB 43..374 47..388 651 40 Plus
Galphaq-PD 353 CG17759-PD 15..352 31..398 647 37.3 Plus
Galphas-PE 382 CG2835-PE 43..371 47..388 646 39.4 Plus
Galphas-PA 382 CG2835-PA 43..371 47..388 646 39.4 Plus
Galphas-PC 382 CG2835-PC 43..371 47..388 646 39.4 Plus
Galphaq-PK 353 CG17759-PK 15..352 31..398 626 37.3 Plus
Galphaq-PE 353 CG17759-PE 15..352 31..398 626 37.3 Plus
Galphaq-PC 353 CG17759-PC 15..352 31..398 626 37.3 Plus
Galphaq-PG 353 CG17759-PG 15..352 31..398 626 37.3 Plus
Galphaq-PA 353 CG17759-PA 15..352 31..398 626 37.3 Plus
Galphaq-PJ 396 CG17759-PJ 15..395 31..398 589 34.4 Plus
CG30054-PE 353 CG30054-PE 34..353 48..399 571 36.1 Plus
Galphao-PI 354 CG2204-PI 19..354 31..399 561 34.5 Plus
Galphao-PA 354 CG2204-PA 19..354 31..399 561 34.5 Plus
Galphao-PC 354 CG2204-PC 19..354 31..399 561 34.5 Plus
Galphao-PH 354 CG2204-PH 19..354 31..399 560 34.5 Plus
Galphao-PG 354 CG2204-PG 19..354 31..399 560 34.5 Plus
Galphao-PF 354 CG2204-PF 19..354 31..399 560 34.5 Plus
Galphao-PE 354 CG2204-PE 19..354 31..399 560 34.5 Plus
Galphao-PD 354 CG2204-PD 19..354 31..399 560 34.5 Plus
Galphao-PB 354 CG2204-PB 19..354 31..399 560 34.5 Plus
CG30054-PF 325 CG30054-PF 12..325 54..399 551 35.5 Plus
CG17760-PB 353 CG17760-PB 34..352 48..398 548 35.8 Plus
Galphai-PA 355 CG10060-PA 26..355 40..399 503 33.7 Plus
cta-PB 457 CG17678-PB 133..456 48..398 469 35.9 Plus
cta-PA 457 CG17678-PA 133..456 48..398 469 35.9 Plus
Galphao-PJ 127 CG2204-PJ 2..127 249..399 182 33.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11940-PA 393 GI11940-PA 1..389 1..397 1726 81.2 Plus
Dmoj\GI20476-PA 353 GI20476-PA 15..352 31..398 631 37.3 Plus
Dmoj\GI18851-PA 382 GI18851-PA 42..371 46..388 623 39.1 Plus
Dmoj\GI20478-PA 353 GI20478-PA 15..352 31..398 616 35.4 Plus
Dmoj\GI19334-PA 354 GI19334-PA 14..354 26..399 566 34.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13228-PA 372 GL13228-PA 1..372 1..399 1669 79.4 Plus
Dper\GL11181-PA 382 GL11181-PA 42..371 46..388 623 39.1 Plus
Dper\GL20009-PA 432 GL20009-PA 15..431 31..398 593 33.8 Plus
Dper\GL17293-PA 354 GL17293-PA 14..354 26..399 569 34.8 Plus
Dper\GL21168-PA 414 GL21168-PA 127..388 48..314 457 38.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28588-PA 395 GA28588-PA 1..395 1..399 1816 85 Plus
Dpse\GA14650-PD 353 GA14650-PD 15..352 31..398 644 37.3 Plus
Dpse\GA14650-PB 353 GA14650-PB 15..352 31..398 624 37 Plus
Dpse\GA15477-PA 382 GA15477-PA 42..371 46..388 623 39.1 Plus
Dpse\GA14650-PC 396 GA14650-PC 15..395 31..398 591 34.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24377-PA 399 GM24377-PA 1..399 1..399 2131 98.5 Plus
Dsec\GM16066-PA 385 GM16066-PA 42..374 46..388 630 39.9 Plus
Dsec\GM21408-PA 432 GM21408-PA 15..431 31..398 596 33.6 Plus
Dsec\GM21219-PA 354 GM21219-PA 14..354 26..399 572 34.8 Plus
Dsec\GM21411-PA 355 GM21411-PA 24..355 35..399 568 35.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12450-PA 399 GD12450-PA 1..399 1..399 2120 98 Plus
Dsim\GD11812-PA 385 GD11812-PA 42..374 46..388 630 39.9 Plus
Dsim\GD10904-PA 432 GD10904-PA 15..431 31..398 596 33.6 Plus
Dsim\GD10906-PA 353 GD10906-PA 22..353 35..399 587 36.2 Plus
Dsim\GD10742-PA 354 GD10742-PA 14..354 26..399 572 34.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12166-PA 397 GJ12166-PA 1..397 1..399 1716 80.6 Plus
Dvir\GJ22328-PA 353 GJ22328-PA 15..352 31..398 640 37 Plus
Dvir\GJ22327-PA 353 GJ22327-PA 15..352 31..398 639 37.8 Plus
Dvir\GJ21886-PA 382 GJ21886-PA 42..371 46..388 623 39.1 Plus
Dvir\GJ22212-PA 354 GJ22212-PA 14..354 26..399 566 34.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25662-PA 396 GK25662-PA 1..396 1..399 1764 81.7 Plus
Dwil\GK15719-PA 383 GK15719-PA 43..372 46..388 623 39.1 Plus
Dwil\GK23154-PA 432 GK23154-PA 15..431 31..398 594 34 Plus
Dwil\GK17798-PA 354 GK17798-PA 19..354 31..399 568 35 Plus
Dwil\GK17195-PA 355 GK17195-PA 26..355 40..399 517 34 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22198-PA 399 GE22198-PA 1..399 1..399 2113 97.5 Plus
Dyak\GE14344-PA 385 GE14344-PA 42..374 46..388 631 39.9 Plus
Dyak\GE12481-PA 432 GE12481-PA 15..431 31..398 596 33.6 Plus
Dyak\GE19363-PA 354 GE19363-PA 14..354 26..399 572 34.8 Plus
Dyak\GE12483-PA 360 GE12483-PA 41..360 48..399 572 36.1 Plus