Clone MIP05777 Report

Search the DGRC for MIP05777

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:57
Well:77
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptTsp3A-RA
Protein status:MIP05777.pep: gold
Sequenced Size:1617

Clone Sequence Records

MIP05777.complete Sequence

1617 bp assembled on 2009-02-18

GenBank Submission: BT060443.1

> MIP05777.complete
TCCATTGTTTGTACACTTTACTTTTCGTGCAATATTACTACGCTAATAAA
AGGAGATTAGATAAATAAAGAGTGATTATCAAGCGAATGTGCAACTGCCA
CTGCCAATGCTAATTGGGTAAACGAGATAAACGGGCGACTGAAGCGGACG
CAAAGTGAAATCGGTGGCAAAGCGAGTGGTTAAAGTTGAAGATACGGATA
CAGATAAACGGCGAGGATGAGCAACTACCGATATCAGGGTGCTGGGCTCG
GGGGCGTCGGCATGGCCGGGGGGCGTGGCTACAGCGGCATCGAGGTGCAC
GAGGTGATGCATCCGCATCACTTCACCTACGTGAGCCAGTGCGTCAAGTA
CATGATCTTCCTGCTGAACTTCGTGTTCTGGCTCTTTGGCGGCCTGCTCC
TGGGCATTGGCGTCTATGCGTTCAGGGACAAGTGGGAGGACGCGAACGGA
TCGGTGCGGCTGGAGAACTTCTACGACGTATTCCTCAATATCTCGCTGGT
GATGATCCTGGCCGGCACGGTCATCTTTCTGGTCAGCTTCTCCGGCTGCG
TGGGCGCACTGCGCGAGAACACATTCCTACTGAAGTTCTACTCCATGTGC
CTGCTGCTTTTCTTCCTGCTGGAGATGGCCATCGCCATCGTCTGCTTCGT
GTGCCCGCAGTACATGAACACCTTTTTGGAGAAGCAGTTCACGCACAAGA
TCATCCACTCGTACCGCGACGATCCCGACCTGCAGAACTTCATTGACTTT
GCCCAGCAGGAGTTCAAGTGCTGTGGCCTCAGTAATTCGGGCTACCAGGA
CTGGAGCAAAAACGAGTACTTCAACTGCAGCTCGCCGTCGGTGGAGAAGT
GCGGAGTGCCATACAGTTGTTGCATCAATGCCACCGACATATCCTCCGGC
CTGGTGAACATCATGTGCGGCTACGGCGTTCAAAACGCTCCCGTTCCGGA
GGCCACGAAACTGATCTGGACCAGCGGCTGCATAGAAATCGTTCGAGTTT
GGGCCGAGCACAATCTGTACGTGATTGCCGGCAATGCTCTGGGCATTGCG
CTCATCCAGCTGCTGGTCATCTACTTGGCCAAGACGCTGGAGGGCCAAAT
CGAGCTGCAGAAGTCGCGTTGGCTGGCGTGAGATCCGGGACAGCCCAAGT
TCTACGGGCCCTACAACCGCACCTGAACATACATACTCTCGGAATCAGTA
CTCATTTTTTTGTGCACCACTCACGTGCGGACCGGATTGCCAGTAATGAA
AAGTCGAAGATCGTAATGGAAGATAAGCCCAGTAGTAAGCGAATATTACT
TATGTTGTAATCGACTGCCTGGATAGCTGTATATACTCGTACATGAAATT
GTAGACCCATCTGAAAACCACTTAATTATTGTAATCTCAAGCCGACCAAA
CAACGCCATATGTACATTATAATAAGTTAGTGACTTACTCGCTGAAATTC
GATGCATTTATTTATATGTAATTCCTTCGAAAAAAAAGCAACAAACAGTG
CGCACAAATCTTGAATATCTATTCATCCAGAACCATTTCTGGGTTTATTA
TTAATCTAATATAATGTAGATGTATAATAATAAAACACAAAGTAAATCAA
AAAAAAAAAAAAAAAAA

MIP05777.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp3A.a 1879 Tsp3A.a 43..1340 1..1298 6490 100 Plus
Tsp3A.b 1476 Tsp3A.b 43..1340 1..1298 6490 100 Plus
Tsp3A-RA 1268 Tsp3A-RA 43..1268 1..1226 6130 100 Plus
Tsp3A.a 1879 Tsp3A.a 1546..1859 1293..1606 1555 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2512900..2513533 634..1 3125 99.5 Minus
chrX 22417052 chrX 2512053..2512545 1298..806 2465 100 Minus
chrX 22417052 chrX 2511542..2511847 1598..1293 1515 99.7 Minus
chr3R 27901430 chr3R 6694628..6695123 311..806 1010 80.2 Plus
chrX 22417052 chrX 2512652..2512824 806..634 865 100 Minus
chr3R 27901430 chr3R 6695180..6695496 806..1122 610 79.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:05:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2619116..2619749 634..1 3170 100 Minus
X 23542271 X 2618269..2618761 1298..806 2465 100 Minus
X 23542271 X 2617750..2618063 1606..1293 1555 99.7 Minus
3R 32079331 3R 10869091..10869586 311..806 1010 80.2 Plus
X 23542271 X 2618868..2619040 806..634 865 100 Minus
3R 32079331 3R 10869643..10869959 806..1122 610 79.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2627214..2627847 634..1 3170 100 Minus
X 23527363 X 2626367..2626859 1298..806 2465 100 Minus
X 23527363 X 2625848..2626161 1606..1293 1555 99.6 Minus
X 23527363 X 2626966..2627138 806..634 865 100 Minus
3R 31820162 3R 10610142..10610417 531..806 675 82.9 Plus
3R 31820162 3R 10610632..10610790 964..1122 390 83 Plus
3R 31820162 3R 10609951..10610126 340..515 370 80.6 Plus
3R 31820162 3R 10610474..10610597 806..929 335 84.6 Plus
Blast to na_te.dros performed 2019-03-16 06:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 1210..1347 1579..1442 122 57.1 Minus

MIP05777.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:58:47 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2511542..2511843 1297..1598 99 <- Minus
chrX 2512054..2512545 806..1296 99 <- Minus
chrX 2512653..2512823 635..805 100 <- Minus
chrX 2512900..2513533 1..634 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:52 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp3A-RA 1..915 217..1131 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:12 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp3A-RA 1..915 217..1131 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:21:01 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp3A-RA 1..915 217..1131 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:26:44 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp3A-RA 1..915 217..1131 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-18 13:24:15 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp3A-RA 1..1215 12..1226 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:12 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp3A-RA 1..1215 12..1226 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:01 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp3A-RB 1..1283 12..1294 100 -- Plus
Tsp3A-RB 1495..1798 1295..1598 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:26:44 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp3A-RB 1..1283 12..1294 100 -- Plus
Tsp3A-RB 1495..1798 1295..1598 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:47 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
X 2617758..2618059 1297..1598 100 <- Minus
X 2618270..2618761 806..1296 99 <- Minus
X 2618869..2619039 635..805 100 <- Minus
X 2619116..2619749 1..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:47 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
X 2617758..2618059 1297..1598 100 <- Minus
X 2618270..2618761 806..1296 99 <- Minus
X 2618869..2619039 635..805 100 <- Minus
X 2619116..2619749 1..634 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:58:47 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
X 2617758..2618059 1297..1598 100 <- Minus
X 2618270..2618761 806..1296 99 <- Minus
X 2618869..2619039 635..805 100 <- Minus
X 2619116..2619749 1..634 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:01 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2512902..2513072 635..805 100 <- Minus
arm_X 2511791..2512092 1297..1598 100 <- Minus
arm_X 2512303..2512794 806..1296 99 <- Minus
arm_X 2513149..2513782 1..634 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:08:34 Download gff for MIP05777.complete
Subject Subject Range Query Range Percent Splice Strand
X 2625856..2626157 1297..1598 100 <- Minus
X 2626368..2626859 806..1296 99 <- Minus
X 2626967..2627137 635..805 100 <- Minus
X 2627214..2627847 1..634 100   Minus

MIP05777.pep Sequence

Translation from 216 to 1130

> MIP05777.pep
MSNYRYQGAGLGGVGMAGGRGYSGIEVHEVMHPHHFTYVSQCVKYMIFLL
NFVFWLFGGLLLGIGVYAFRDKWEDANGSVRLENFYDVFLNISLVMILAG
TVIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYM
NTFLEKQFTHKIIHSYRDDPDLQNFIDFAQQEFKCCGLSNSGYQDWSKNE
YFNCSSPSVEKCGVPYSCCINATDISSGLVNIMCGYGVQNAPVPEATKLI
WTSGCIEIVRVWAEHNLYVIAGNALGIALIQLLVIYLAKTLEGQIELQKS
RWLA*

MIP05777.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21930-PA 287 GF21930-PA 1..287 1..304 1152 80.4 Plus
Dana\GF18839-PA 290 GF18839-PA 1..289 1..302 1124 76.5 Plus
Dana\GF15597-PA 313 GF15597-PA 7..312 32..302 384 30.7 Plus
Dana\GF15554-PA 306 GF15554-PA 13..256 41..301 210 27 Plus
Dana\GF20316-PA 283 GF20316-PA 8..261 42..300 190 26.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12603-PA 304 GG12603-PA 1..304 1..304 1424 95.4 Plus
Dere\GG17792-PA 291 GG17792-PA 1..290 1..302 1101 75.5 Plus
Dere\GG25112-PA 312 GG25112-PA 13..311 37..302 374 31.9 Plus
Dere\GG25316-PA 311 GG25316-PA 13..256 41..301 217 26.2 Plus
Dere\GG17700-PA 283 GG17700-PA 8..261 42..300 184 25.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11880-PA 304 GH11880-PA 1..304 1..304 1184 80.2 Plus
Dgri\GH18862-PA 293 GH18862-PA 21..292 32..302 1103 83.5 Plus
Dgri\GH11020-PA 313 GH11020-PA 7..312 32..302 395 32.3 Plus
Dgri\GH13874-PA 310 GH13874-PA 13..257 41..301 194 26.7 Plus
Dgri\GH21496-PA 223 GH21496-PA 4..221 39..296 190 27.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp3A-PB 304 CG10742-PB 1..304 1..304 1630 100 Plus
Tsp3A-PA 304 CG10742-PA 1..304 1..304 1630 100 Plus
Tsp86D-PB 291 CG4591-PB 1..290 1..302 1204 75.2 Plus
Tsp86D-PA 291 CG4591-PA 1..290 1..302 1204 75.2 Plus
Tsp86D-PC 316 CG4591-PC 1..290 1..302 1204 75.2 Plus
Tsp26A-PC 277 CG9093-PC 15..276 39..302 434 36 Plus
Tsp26A-PB 314 CG9093-PB 15..313 39..302 406 32 Plus
Tsp26A-PD 275 CG9093-PD 15..274 39..302 402 35.1 Plus
Tsp29Fb-PC 308 CG9496-PC 13..256 41..301 216 25.7 Plus
Tsp29Fb-PA 308 CG9496-PA 13..256 41..301 216 25.7 Plus
Tsp29Fb-PB 308 CG9496-PB 13..256 41..301 216 25.7 Plus
Tsp42Ed-PB 227 CG12846-PB 8..224 43..301 199 25.3 Plus
Tsp42Ed-PA 227 CG12846-PA 8..224 43..301 199 25.3 Plus
Tsp5D-PB 283 CG4690-PB 8..243 42..282 195 26.6 Plus
Tsp5D-PA 283 CG4690-PA 8..243 42..282 195 26.6 Plus
Tsp5D-PC 287 CG4690-PC 8..243 42..282 195 26.6 Plus
Tsp39D-PB 235 CG8666-PB 8..221 42..288 191 24.8 Plus
Tsp29Fa-PC 248 CG9494-PC 8..241 40..298 183 23.8 Plus
Tsp29Fa-PB 248 CG9494-PB 8..241 40..298 183 23.8 Plus
Tsp29Fa-PA 248 CG9494-PA 8..241 40..298 183 23.8 Plus
Tsp47F-PB 239 CG9033-PB 9..239 43..301 182 25 Plus
CG30160-PA 222 CG30160-PA 4..212 39..288 181 27.6 Plus
Tsp42Eb-PB 222 CG18816-PB 4..212 39..288 181 27.6 Plus
Tsp66E-PC 267 CG4999-PC 9..255 42..291 170 24.5 Plus
Tsp66E-PA 267 CG4999-PA 9..255 42..291 170 24.5 Plus
Tsp66E-PB 267 CG4999-PB 9..255 42..291 170 24.5 Plus
Tsp42Ea-PC 226 CG18817-PC 8..223 43..301 169 24.8 Plus
Tsp42Ea-PB 226 CG18817-PB 8..223 43..301 169 24.8 Plus
Tsp42Ea-PA 226 CG18817-PA 8..223 43..301 169 24.8 Plus
Tsp96F-PC 268 CG6120-PC 9..257 42..291 159 22.5 Plus
Tsp96F-PA 268 CG6120-PA 9..257 42..291 159 22.5 Plus
Tsp96F-PB 284 CG6120-PB 9..257 42..291 159 22.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15668-PA 315 GI15668-PA 39..315 28..304 1222 80.9 Plus
Dmoj\GI22932-PA 291 GI22932-PA 1..290 1..302 1118 77.6 Plus
Dmoj\GI17539-PA 317 GI17539-PA 7..316 32..302 393 30.6 Plus
Dmoj\GI17426-PA 308 GI17426-PA 13..255 41..301 212 25.8 Plus
Dmoj\GI17425-PA 248 GI17425-PA 8..189 40..224 184 28.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12547-PA 290 GL12547-PA 1..289 1..302 1125 76.2 Plus
Dper\GL26882-PA 208 GL26882-PA 102..208 198..304 484 87.9 Plus
Dper\GL19049-PA 313 GL19049-PA 7..312 32..302 373 29.4 Plus
Dper\GL26882-PA 208 GL26882-PA 1..104 1..117 312 65.8 Plus
Dper\GL25579-PA 308 GL25579-PA 13..256 41..301 200 26.3 Plus
Dper\GL14958-PA 283 GL14958-PA 8..243 42..282 197 27.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22650-PA 303 GA22650-PA 1..289 1..302 1193 80.1 Plus
Dpse\GA18282-PA 290 GA18282-PA 1..289 1..302 1125 76.2 Plus
Dpse\GA21537-PA 313 GA21537-PA 7..312 32..302 378 29.7 Plus
Dpse\GA21832-PA 308 GA21832-PA 13..256 41..301 203 26.4 Plus
Dpse\GA22293-PA 283 GA22293-PA 8..243 42..282 198 27.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18869-PA 304 GM18869-PA 1..304 1..304 1413 95.4 Plus
Dsec\GM23909-PA 290 GM23909-PA 1..289 1..302 1118 75.5 Plus
Dsec\GM18589-PA 254 GM18589-PA 13..254 37..282 350 34 Plus
Dsec\GM17272-PA 308 GM17272-PA 13..256 41..301 209 25.8 Plus
Dsec\GM20827-PA 227 GM20827-PA 8..224 43..301 189 26.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24608-PA 304 GD24608-PA 1..304 1..304 1567 96.7 Plus
Dsim\GD18721-PA 290 GD18721-PA 1..289 1..302 1148 75.5 Plus
Dsim\GD23377-PA 314 GD23377-PA 13..313 37..302 388 31.5 Plus
Dsim\GD23575-PA 308 GD23575-PA 13..256 41..301 214 26.2 Plus
Dsim\GD10280-PA 227 GD10280-PA 8..224 43..301 184 25.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19203-PA 310 GJ19203-PA 1..310 1..304 1210 80.3 Plus
Dvir\GJ23216-PA 291 GJ23216-PA 1..290 1..302 1119 77.9 Plus
Dvir\GJ15439-PA 313 GJ15439-PA 7..312 32..302 401 31.6 Plus
Dvir\GJ16743-PA 283 GJ16743-PA 7..260 41..299 190 26.9 Plus
Dvir\GJ18361-PA 310 GJ18361-PA 13..257 41..301 186 25 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13989-PA 288 GK13989-PA 1..282 1..293 1145 76.5 Plus
Dwil\GK14713-PA 313 GK14713-PA 9..312 34..302 372 29.6 Plus
Dwil\GK24539-PA 308 GK24539-PA 13..256 41..301 201 25.7 Plus
Dwil\GK17445-PA 283 GK17445-PA 8..243 42..282 188 27.3 Plus
Dwil\GK21888-PA 239 GK21888-PA 9..239 43..301 185 26.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16934-PA 304 GE16934-PA 1..304 1..304 1422 95.1 Plus
Dyak\GE26059-PA 291 GE26059-PA 1..290 1..302 1120 76.2 Plus
Dyak\GE25811-PA 275 GE25811-PA 10..274 34..302 387 34.7 Plus
Dyak\GE18807-PA 308 GE18807-PA 13..256 41..301 209 25.8 Plus
Dyak\Tsp42Ed-PA 227 GE24279-PA 8..224 43..301 184 26.2 Plus

MIP05777.hyp Sequence

Translation from 216 to 1130

> MIP05777.hyp
MSNYRYQGAGLGGVGMAGGRGYSGIEVHEVMHPHHFTYVSQCVKYMIFLL
NFVFWLFGGLLLGIGVYAFRDKWEDANGSVRLENFYDVFLNISLVMILAG
TVIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYM
NTFLEKQFTHKIIHSYRDDPDLQNFIDFAQQEFKCCGLSNSGYQDWSKNE
YFNCSSPSVEKCGVPYSCCINATDISSGLVNIMCGYGVQNAPVPEATKLI
WTSGCIEIVRVWAEHNLYVIAGNALGIALIQLLVIYLAKTLEGQIELQKS
RWLA*

MIP05777.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp3A-PB 304 CG10742-PB 1..304 1..304 1630 100 Plus
Tsp3A-PA 304 CG10742-PA 1..304 1..304 1630 100 Plus
Tsp86D-PB 291 CG4591-PB 1..290 1..302 1204 75.2 Plus
Tsp86D-PA 291 CG4591-PA 1..290 1..302 1204 75.2 Plus
Tsp86D-PC 316 CG4591-PC 1..290 1..302 1204 75.2 Plus