Clone MIP05843 Report

Search the DGRC for MIP05843

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:58
Well:43
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptHsepi-RB
Protein status:MIP05843.pep: gold
Sequenced Size:3030

Clone Sequence Records

MIP05843.complete Sequence

3030 bp assembled on 2009-04-28

GenBank Submission: BT082091.1

> MIP05843.complete
CAGTTTCTGTGTTTTCGCAGTGTTCGCCCATTAAAGCGAGAAGAGCAGCG
CAAATCTAAGCAAAATATGCTTAGTGAGAACTGGATGCACTTGAAATATC
AACTTTGGATGGCCCTGGACTGAACTCAGAGGGCTACAGGCTCGGCAGGT
GGAATTTTAGACAGAGACAGTGAAAGAGACGTACGCGTACTGGTGCACCA
TTATCATCGTCAGCAATGCATCTGCCAGATGAATGCAGTTTTAAATTTAG
AGCATGACTCACCTAGAAGCCAGTTAGAGAGTTCGCCCCCAACCGAATGT
CCAAATATCTAAGCAGTCAGAGAGATGCCCTTTCCGCACCCGCGCTTCCA
GTAAGCAGGGAAAACCGGGAGCCACCTAAATTCCAAGGGCAACGCGAGCC
ACTGGTCTTTTTCATCATGCGACTGAACCTAAAAGCCGTGCTGCTTGTCC
TCACAGTGGCTGTGGTGGTAATCACTCTGGGCGTGTATATGCGCTGCGCC
GCCTTCTCCTTTTCGCCGGACTTTGTGCGTCCTCTGGACCGGTCCGCAAG
GCAGTCCTCCAGCGGAGGAGAAGCTACAGCGCTGCACGACATTGAGTGCT
CCATTAACCAGGAGTACACCGTGCACTGCAAGCGAGACGAGAACGCCAAC
GAGGTTTACGTTCCGTTTTCCTTCCTGCGTAACTACTTCGACGTCAGTGG
AGCAGTTTCCACCAACAGCAATGAGGTGGCCAAGTTCAACTGGGTGCACA
GCACAGCCAAAGTTAACCTTCCCAGGGGAAAGTACGATGCGCGCGGCGTC
TATATGTACTTTGAGAACTACAACGTGGAAGTGCGCGACCGGGTAAAGTG
CATCAGTGCCGCGGAGGGCGTTCCAGTGAGCACGCAATGGGAGAAGCGTG
GGTACTTTTACCCCACACAAATTGCCCAGTTCGCGTTGTCGCACTACAGC
AAGAACCTCACAGAGCCGGCACCCAGGGTTCGCGTGTTGGAGGACGGCGA
CGGGAACCAGATGGAATGGAGTACGCCCAAGACCAGCAACATGACCCGCA
TCTGGCACCACAAGTTTAACACCAGTGTTGTCCAGTTCGAGACGGCACCT
GGTTACGAAGGCGTCATCAGCATTGCTCTAAACCAGACATTGGATCTTCT
GCTCAGCGTTGATCTGCTCCTGGTAACCAATAGCAGTAGTCTCATGATTA
CCGTTCAGAATCGGGACACCCGTCACAACTACAGCCTGCACTACATACCC
GCAGATCTGCTGCTGAGCGTGCAGGATACAAACATCTACTACGGTCTGGG
AGGCTCGGCACTGAACAAGTGGCGCCACATCACTCGAGACCTGCACATTG
ACCTTCAAAAGGGCATCATGGGTGACAAACGCTCGCCGCTAAAGATACGG
CGCTCCGATCTGGAGGTAATATCTATTGGCTTTCTGGGCCTTGGCTTCTT
CGACAATATCACCTTGTCCACCAGTGACCATCTGGCTCACTTCTACGACG
CGGCTGAGTGGTTCGTCCACAACCAGGACCCCAAGACGGGTGGCTGGACC
AATCCTGTGCGTCGCAGCCTCAACGGCTTTGCCGAATTGCGTCCGGGGTG
GATATCAGCCATGGGCCAGGGACACGCTATTTCAGTGCTGGCACGAGCCT
ACTGGCACTCCGGCGGGGATGAACGCTACCTTCGAGCGGCCGCAGCCGGA
CTGCAGCCTTATAGGGTATACTCGCGCGATGGCGGCGTTCTGGCGCAGTT
CATGGACAAGTTCTACTGGTACGAGGAGTACCCCACCACGCCACCCTCTT
ATGTGCTAAACGGCTTTATCTATTCACTGCTGGGTCTCTACGATCTCAAC
AGCACTGCCCCGGGAAAAATCGCCCGCGAGGCTGGAAAGCTTTTCGCGCA
GGGCATGCACTCCCTTAAAAAGATGCTGTTGCTATTTGACACTGGCTCCG
GCACCAGCTACGACCTGCGCCATCTGAGCCTGGGCGTAGCTCCTAATCTG
GCGCGCTGGGACTACCATGCAACGCACGTGAACCAGTTACTTCTGTTAGC
CACCATCGACAGCGATCCATTAATTGCACAAACTGCGGAGCGCTGGAAGG
GCTATATGTTTGGTCGTCGGGCCAAGCACAACTGAGAACTACGGAAACTG
GCCGTCTATCGCCGTCGAAAAAGTGATATTTTTTAGGGCCTACGTATTGT
GCTTAACCATTCAAAATGGTTGCACCAAACGCCGTGTCCTTTCCACAACC
TCACACTCCTGATCTGGAAATAGTTTCGTGTTTCTATTCTGTTATTTCCG
CCCACGTATGTGTGCTGAAATCCTTATTAAGCTTGTCTATCTGGGCGCCT
AGTGTTAAGCTGTTGTACCTTTACCTTTGATTGCATTATCAGATGTTGGC
CTCGTCTACGAAAATTTGTTAATTCCCCTAATGATAGATCAATTGTTTGC
CCTAGATGCACGCGCGCCTTCTGGACAATACTTTAAATGAATATTTAACC
GTTTTAGTTAGATTTTTTACTGTGCAAACTAAGTAGAGATTATAATTACA
CATCCCTGTATAAAGTAACATAGAGCTTAGCATACTAGATGTAGAACGTA
GTTAGTATCTGGTAGATACAAACGTAGACTCTTGTATTTAGCCTCCCGTG
TAGAGGCAATAGTAGCGCTCCCACTCAATACTAACTGCCCAAATAACGAT
GCACGATAATAACGACTTATATATGATAAGCCTGTAATGTAATGTATTGT
AGTGTATGCCACTCGAGAATATCATGTACTTCTCGCCACTTAAACGATGC
CATTCCAAACATAATTTTATTTTAACTCCTAGGTTTTCAACATCGCCGAG
AGGCCGTCAATTAAGCAGAGAAATGTACCCTTTCGAAGTTAATCTTCGTA
TCATTTATGTGTGTCCCACTACTAATCCCAAAACGAGACTGTTAACGAAA
ATATTTGATTTTGAATATTATGTTAAGTGAACCAAATTAAAGTACTTAAT
TTTTGTTCTTTGTAAAAAAAAAAAAAAAAA

MIP05843.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3194-RB 3034 CG3194-RB 22..3034 1..3013 15065 100 Plus
CG3194-RA 3027 CG3194-RA 403..3027 389..3013 13125 100 Plus
CG3194.b 2659 CG3194.b 562..2480 389..2307 9595 100 Plus
CG3194-RA 3027 CG3194-RA 9..397 1..389 1945 100 Plus
CG3194.b 2659 CG3194.b 168..556 1..389 1945 100 Plus
CG3194.b 2659 CG3194.b 2479..2659 2833..3013 905 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2558703..2560084 1770..389 6910 100 Minus
chr2R 21145070 chr2R 2557346..2558600 3013..1764 6120 99.4 Minus
chr2R 21145070 chr2R 2560146..2560534 389..1 1945 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:05:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6671506..6672887 1770..389 6910 100 Minus
2R 25286936 2R 6670153..6671403 3014..1764 6240 99.9 Minus
2R 25286936 2R 6672949..6673337 389..1 1945 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6672705..6674086 1770..389 6910 100 Minus
2R 25260384 2R 6671352..6672602 3014..1764 6240 99.9 Minus
2R 25260384 2R 6674148..6674536 389..1 1945 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:12:33 has no hits.

MIP05843.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:13:35 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2557346..2558595 1769..3013 99 <- Minus
chr2R 2558705..2560083 390..1768 100 <- Minus
chr2R 2560146..2560534 1..389 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:51:07 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3194-RA 1..1845 297..2135 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:46:39 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3194-RB 1..1839 297..2135 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:16:47 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
Hsepi-RB 1..1839 297..2135 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:23 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
Hsepi-RB 1..1839 297..2135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-28 17:10:02 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3194-RA 9..2149 1..2135 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:46:38 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
CG3194-RB 9..3021 1..3013 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:16:47 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
Hsepi-RB 36..3048 1..3013 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:23 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
Hsepi-RB 36..3048 1..3013 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:35 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6670154..6671398 1769..3013 100 <- Minus
2R 6671508..6672886 390..1768 100 <- Minus
2R 6672949..6673337 1..389 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:35 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6670154..6671398 1769..3013 100 <- Minus
2R 6671508..6672886 390..1768 100 <- Minus
2R 6672949..6673337 1..389 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:35 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6670154..6671398 1769..3013 100 <- Minus
2R 6671508..6672886 390..1768 100 <- Minus
2R 6672949..6673337 1..389 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:16:47 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2557659..2558903 1769..3013 100 <- Minus
arm_2R 2559013..2560391 390..1768 100 <- Minus
arm_2R 2560454..2560842 1..389 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:32:28 Download gff for MIP05843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6671353..6672597 1769..3013 100 <- Minus
2R 6672707..6674085 390..1768 100 <- Minus
2R 6674148..6674536 1..389 100   Minus

MIP05843.pep Sequence

Translation from 296 to 2134

> MIP05843.pep
MSKYLSSQRDALSAPALPVSRENREPPKFQGQREPLVFFIMRLNLKAVLL
VLTVAVVVITLGVYMRCAAFSFSPDFVRPLDRSARQSSSGGEATALHDIE
CSINQEYTVHCKRDENANEVYVPFSFLRNYFDVSGAVSTNSNEVAKFNWV
HSTAKVNLPRGKYDARGVYMYFENYNVEVRDRVKCISAAEGVPVSTQWEK
RGYFYPTQIAQFALSHYSKNLTEPAPRVRVLEDGDGNQMEWSTPKTSNMT
RIWHHKFNTSVVQFETAPGYEGVISIALNQTLDLLLSVDLLLVTNSSSLM
ITVQNRDTRHNYSLHYIPADLLLSVQDTNIYYGLGGSALNKWRHITRDLH
IDLQKGIMGDKRSPLKIRRSDLEVISIGFLGLGFFDNITLSTSDHLAHFY
DAAEWFVHNQDPKTGGWTNPVRRSLNGFAELRPGWISAMGQGHAISVLAR
AYWHSGGDERYLRAAAAGLQPYRVYSRDGGVLAQFMDKFYWYEEYPTTPP
SYVLNGFIYSLLGLYDLNSTAPGKIAREAGKLFAQGMHSLKKMLLLFDTG
SGTSYDLRHLSLGVAPNLARWDYHATHVNQLLLLATIDSDPLIAQTAERW
KGYMFGRRAKHN*

MIP05843.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13803-PA 618 GF13803-PA 1..618 1..612 2798 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10815-PA 614 GG10815-PA 1..614 1..612 3199 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20150-PA 637 GH20150-PA 43..637 32..612 2604 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
Hsepi-PB 612 CG3194-PB 1..612 1..612 3226 100 Plus
Hsepi-PA 614 CG3194-PA 1..614 1..612 3213 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20241-PA 641 GI20241-PA 50..641 32..612 2650 85.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10992-PA 632 GL10992-PA 14..632 1..612 2881 85.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16581-PA 619 GA16581-PA 1..619 1..612 2888 85.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20864-PA 614 GM20864-PA 1..614 1..612 3222 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10315-PA 614 GD10315-PA 1..614 1..612 3232 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20193-PA 639 GJ20193-PA 51..639 33..612 2623 84.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23149-PA 596 GK23149-PA 4..596 33..612 2369 75.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24632-PA 614 GE24632-PA 1..614 1..612 3002 95.3 Plus

MIP05843.hyp Sequence

Translation from 296 to 2134

> MIP05843.hyp
MSKYLSSQRDALSAPALPVSRENREPPKFQGQREPLVFFIMRLNLKAVLL
VLTVAVVVITLGVYMRCAAFSFSPDFVRPLDRSARQSSSGGEATALHDIE
CSINQEYTVHCKRDENANEVYVPFSFLRNYFDVSGAVSTNSNEVAKFNWV
HSTAKVNLPRGKYDARGVYMYFENYNVEVRDRVKCISAAEGVPVSTQWEK
RGYFYPTQIAQFALSHYSKNLTEPAPRVRVLEDGDGNQMEWSTPKTSNMT
RIWHHKFNTSVVQFETAPGYEGVISIALNQTLDLLLSVDLLLVTNSSSLM
ITVQNRDTRHNYSLHYIPADLLLSVQDTNIYYGLGGSALNKWRHITRDLH
IDLQKGIMGDKRSPLKIRRSDLEVISIGFLGLGFFDNITLSTSDHLAHFY
DAAEWFVHNQDPKTGGWTNPVRRSLNGFAELRPGWISAMGQGHAISVLAR
AYWHSGGDERYLRAAAAGLQPYRVYSRDGGVLAQFMDKFYWYEEYPTTPP
SYVLNGFIYSLLGLYDLNSTAPGKIAREAGKLFAQGMHSLKKMLLLFDTG
SGTSYDLRHLSLGVAPNLARWDYHATHVNQLLLLATIDSDPLIAQTAERW
KGYMFGRRAKHN*

MIP05843.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
Hsepi-PB 612 CG3194-PB 1..612 1..612 3226 100 Plus
Hsepi-PA 614 CG3194-PA 1..614 1..612 3213 99.7 Plus