MIP05887.complete Sequence
778 bp assembled on 2009-02-25
GenBank Submission: BT070220.1
> MIP05887.complete
CCCAATTTGCAGGGGTGTATCTTTGTTCTGTGGAACACACACATTACACA
TTAGGCTGATCCAATACATCAGCAGACTTGTTTGAATCAATCAGTCATAG
AGGAAAACTGCATCAGCAAGGTTGAGCTATGAATATCTTTATCTCCTTAA
TATTGGTAGTGCTGGCCATTTTATCTTTTGCTGACCACACCGTGGCAGAC
GGAGATCGGCACCTAAATGAGGACTTAAATCGAGCGACGGTAAAGAAGAC
TAAGTATGGTTGGCAATGTGCCGGGGTGACGTGCCCCATAAAGTTTACGG
CATCTTGTAAGGTAACAAAGGTCCTAAAGCCCTCTGATCTACAGCACACT
GAGCTCCTGATTTTGTGCATGGATAAAAACGATAAGCCTATGTGTGGGAT
AACACGAACTCGAAAAGGGGTAATACAGGAAGTTCTGGACGTGGATGAAA
ACGGAAATACGATATATGACAAAAAGGAAGTTATTTCGGAGAACGATGGT
ACTAAAATCCCTAGGTGCCCACGAAAGTAAATGATGTGCACTGATCGACT
TCACACAAATATGTTTTATCTACACAAGGTTTTTAACTTTAAATGTTATG
GACTATAAAAATAATTACACATTTTTGTGGCAACCAACAATGGTTTATAT
ATCTTGTAGAAAAAATATTGGTATAGTTTGGCAATTAGTATGTATATAGA
ATTGGTGAAACTAACAGAATGCGTTACACATAAATAAAGATAACGAACAC
AAAAGACAACAAAAAAAAAAAAAAAAAA
MIP05887.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp78E-RA | 778 | Sfp78E-RA | 19..778 | 1..760 | 3800 | 100 | Plus |
CG11248-RB | 2927 | CG11248-RB | 2779..2927 | 768..620 | 730 | 99.3 | Minus |
CG11248-RA | 2998 | CG11248-RA | 2850..2998 | 768..620 | 730 | 99.3 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 21672034..21672538 | 760..256 | 2525 | 100 | Minus |
chr3L | 24539361 | chr3L | 21672712..21672900 | 195..7 | 945 | 100 | Minus |
chr3L | 24539361 | chr3L | 21672601..21672662 | 255..194 | 310 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:05:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21683090..21683602 | 768..256 | 2550 | 99.8 | Minus |
3L | 28110227 | 3L | 21683776..21683964 | 195..7 | 945 | 100 | Minus |
3L | 28110227 | 3L | 21683665..21683726 | 255..194 | 310 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 21676190..21676702 | 768..256 | 2550 | 99.8 | Minus |
3L | 28103327 | 3L | 21676876..21677064 | 195..7 | 945 | 100 | Minus |
3L | 28103327 | 3L | 21676765..21676826 | 255..194 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 07:18:08 has no hits.
MIP05887.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:18:52 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 21672034..21672538 | 256..760 | 100 | <- | Minus |
chr3L | 21672601..21672661 | 195..255 | 100 | <- | Minus |
chr3L | 21672713..21672905 | 1..194 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:37:57 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp78E-RA | 1..402 | 129..530 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:22:30 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp78E-RA | 1..402 | 129..530 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:30:54 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp78E-RA | 1..402 | 129..530 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-25 16:57:49 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11248-RA | 2802..2935 | 627..760 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:37:57 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp78E-RA | 19..778 | 1..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:30 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp78E-RA | 19..778 | 1..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:30:54 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sfp78E-RA | 19..778 | 1..760 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:52 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21683098..21683602 | 256..760 | 100 | <- | Minus |
3L | 21683665..21683725 | 195..255 | 100 | <- | Minus |
3L | 21683777..21683969 | 1..194 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:52 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21683098..21683602 | 256..760 | 100 | <- | Minus |
3L | 21683665..21683725 | 195..255 | 100 | <- | Minus |
3L | 21683777..21683969 | 1..194 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:18:52 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21683098..21683602 | 256..760 | 100 | <- | Minus |
3L | 21683665..21683725 | 195..255 | 100 | <- | Minus |
3L | 21683777..21683969 | 1..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:30 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21676198..21676702 | 256..760 | 100 | <- | Minus |
arm_3L | 21676765..21676825 | 195..255 | 100 | <- | Minus |
arm_3L | 21676877..21677069 | 1..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:11:50 Download gff for
MIP05887.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21676198..21676702 | 256..760 | 100 | <- | Minus |
3L | 21676765..21676825 | 195..255 | 100 | <- | Minus |
3L | 21676877..21677069 | 1..194 | 98 | | Minus |
MIP05887.pep Sequence
Translation from 128 to 529
> MIP05887.pep
MNIFISLILVVLAILSFADHTVADGDRHLNEDLNRATVKKTKYGWQCAGV
TCPIKFTASCKVTKVLKPSDLQHTELLILCMDKNDKPMCGITRTRKGVIQ
EVLDVDENGNTIYDKKEVISENDGTKIPRCPRK*
MIP05887.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp78E-PA | 133 | CG42607-PA | 1..133 | 1..133 | 701 | 100 | Plus |
Sfp78E-PB | 150 | CG42607-PB | 1..150 | 1..133 | 673 | 88.7 | Plus |
MIP05887.hyp Sequence
Translation from 128 to 529
> MIP05887.hyp
MNIFISLILVVLAILSFADHTVADGDRHLNEDLNRATVKKTKYGWQCAGV
TCPIKFTASCKVTKVLKPSDLQHTELLILCMDKNDKPMCGITRTRKGVIQ
EVLDVDENGNTIYDKKEVISENDGTKIPRCPRK*
MIP05887.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sfp78E-PA | 133 | CG42607-PA | 1..133 | 1..133 | 701 | 100 | Plus |
Sfp78E-PB | 150 | CG42607-PB | 1..150 | 1..133 | 673 | 88.7 | Plus |