Clone MIP05919 Report

Search the DGRC for MIP05919

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:59
Well:19
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG4884-RA
Protein status:MIP05919.pep: gold
Sequenced Size:1107

Clone Sequence Records

MIP05919.complete Sequence

1107 bp assembled on 2009-02-20

GenBank Submission: BT064647.1

> MIP05919.complete
CCGAAATAATCAAACCAGCCGAAGAGAAAAAAAAACCGCAGCTCCCAGTG
GCTGAAAAGAAGGATTGGGGTGATGATTTCATATCCTGCTTCTCGGACGA
ACCCTCAGTAAAGTTGGACCGCGTGGATGTCCAGGTGGAGACCCAAAAAC
TGGGCAATGCCCTCAGTAATTTGGCAATGAAAGCCAAAAGTAAAAAGCCG
GTAGTAGAAGTCAAAAATAACCCTGTTAAAAAAGAGAAGTCCCCCAGCCC
AGAGCCCATGGAGGTGGAGCCACATGATGATGATGATTTCCTGCCCGCAG
ATCTGCACAACTATCGCCCCCTTACTGTCTACCAAGTGCGTCCTAATCCC
GACAAGAAACCCAAAAAGAAACGAAACAAAAAGGCAAACAAGTCCTAGAG
ATGGTTGGCAACGCCACCGCAACAGCTGTAGTTTTTAGGTTATGTTATTC
AGTTTGTTATCGTAATTGTTAAGGCGCCCACACAAAATGCTCCGGACTTT
TCGTCAAATAGCCCGACTAGGAAGATCCCTAAGGACGCCATTTCCATCTA
AAAGTCTGCCTAAACTCTCAACCACCTTAGAGCTGCAGGCTCCTGTACAC
ACCAGTGCTTCAGCGTGGAAGTACGACAAGAAATCCTCACGAGCATCGGA
TGACTTGGACAGCGACGACGAGGATGATGAGGATTTCAAGGACGAAAGGG
ACTCCAAGGTGGTCAAGACCAAGGTGAACTCACTGCGCGCCGATCTCCTA
CTGAAAGCTGGCCTGGGCATGGCGAGAAACAAAGTGGAACTGAATTTCTA
CGAGAGCAAGATACGCGTCAATGGAAAGAAGCTGCCCAAAAAGAGTGCCC
AGCTGGAAGTCGGCGATGAAATCGACGTAATCCGAGGCTTTAGTCAATCG
AATCCTTCCCATCTGGTCGTGGCCCGCGTCTCAATCCTCTCCGTCAGCGA
GCGCGAGGAAGGACTCAGCGTCCACCTGAGGCGCTACAAATCCCTGCTGG
TCGAGAATTACCGGGGACCCAACGCCTTCAAATCCTCAGAGCACGTTGCT
CATTAAAACCAATTAGAAATAAAGAGACTATTAAGAGTAAAAAAAAAAAA
AAAAAAA

MIP05919.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4884-RA 723 CG4884-RA 1..723 334..1056 3615 100 Plus
CG42487-RA 963 CG42487-RA 533..963 1..431 2140 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23780771..23781549 779..1 3880 99.9 Minus
chr3R 27901430 chr3R 23780348..23780586 1088..850 1195 100 Minus
chr3R 27901430 chr3R 23780636..23780708 852..780 365 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:05:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27957807..27958585 779..1 3880 99.9 Minus
3R 32079331 3R 27957381..27957622 1091..850 1210 100 Minus
3R 32079331 3R 27957672..27957744 852..780 365 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27698638..27699416 779..1 3880 99.8 Minus
3R 31820162 3R 27698212..27698453 1091..850 1210 100 Minus
3R 31820162 3R 27698503..27698575 852..780 365 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:32:56 has no hits.

MIP05919.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:33:36 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23780348..23780583 853..1088 100 <- Minus
chr3R 23780636..23780708 780..852 100 <- Minus
chr3R 23780771..23781549 1..779 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:06:13 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 1..570 487..1056 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:36:37 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 1..570 487..1056 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:17 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 1..570 487..1056 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:13 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 1..570 487..1056 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-20 22:26:04 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 1..723 334..1056 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:36:37 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 1..1088 1..1088 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:17 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
CG4884-RA 1..1088 1..1088 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:13 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
CG4884-RB 603..1690 1..1088 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:36 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27957384..27957619 853..1088 100 <- Minus
3R 27957672..27957744 780..852 100 <- Minus
3R 27957807..27958585 1..779 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:36 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27957384..27957619 853..1088 100 <- Minus
3R 27957672..27957744 780..852 100 <- Minus
3R 27957807..27958585 1..779 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:33:36 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27957384..27957619 853..1088 100 <- Minus
3R 27957672..27957744 780..852 100 <- Minus
3R 27957807..27958585 1..779 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:17 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23783106..23783341 853..1088 100 <- Minus
arm_3R 23783394..23783466 780..852 100 <- Minus
arm_3R 23783529..23784307 1..779 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:10:14 Download gff for MIP05919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27698215..27698450 853..1088 100 <- Minus
3R 27698503..27698575 780..852 100 <- Minus
3R 27698638..27699416 1..779 99   Minus

MIP05919.pep Sequence

Translation from 486 to 1055

> MIP05919.pep
MLRTFRQIARLGRSLRTPFPSKSLPKLSTTLELQAPVHTSASAWKYDKKS
SRASDDLDSDDEDDEDFKDERDSKVVKTKVNSLRADLLLKAGLGMARNKV
ELNFYESKIRVNGKKLPKKSAQLEVGDEIDVIRGFSQSNPSHLVVARVSI
LSVSEREEGLSVHLRRYKSLLVENYRGPNAFKSSEHVAH*

MIP05919.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16134-PA 417 GF16134-PA 236..417 13..189 657 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12079-PA 189 GG12079-PA 1..189 1..189 802 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19162-PA 192 GH19162-PA 1..192 1..189 700 71.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4884-PB 189 CG4884-PB 1..189 1..189 945 100 Plus
CG4884-PA 189 CG4884-PA 1..189 1..189 945 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23267-PA 192 GI23267-PA 1..192 1..189 551 70.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23878-PA 193 GL23878-PA 1..193 1..189 676 75.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18501-PA 193 GA18501-PA 1..193 1..189 676 75.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16305-PA 189 GM16305-PA 1..189 1..189 816 94.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18043-PA 189 GD18043-PA 1..189 1..189 823 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10768-PA 192 GJ10768-PA 1..192 1..189 623 71.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22530-PA 193 GK22530-PA 1..193 1..189 659 68.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10524-PA 189 GE10524-PA 1..189 1..189 798 92.6 Plus

MIP05919.hyp Sequence

Translation from 486 to 1055

> MIP05919.hyp
MLRTFRQIARLGRSLRTPFPSKSLPKLSTTLELQAPVHTSASAWKYDKKS
SRASDDLDSDDEDDEDFKDERDSKVVKTKVNSLRADLLLKAGLGMARNKV
ELNFYESKIRVNGKKLPKKSAQLEVGDEIDVIRGFSQSNPSHLVVARVSI
LSVSEREEGLSVHLRRYKSLLVENYRGPNAFKSSEHVAH*

MIP05919.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4884-PB 189 CG4884-PB 1..189 1..189 945 100 Plus
CG4884-PA 189 CG4884-PA 1..189 1..189 945 100 Plus