Clone MIP05949 Report

Search the DGRC for MIP05949

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:59
Well:49
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG43075-RA
Protein status:MIP05949.pep: gold
Sequenced Size:774

Clone Sequence Records

MIP05949.complete Sequence

774 bp assembled on 2011-03-10

GenBank Submission: BT126157.1

> MIP05949.complete
CACTTATTAATACGATATTATTACGATTACGATTATAAATTTCGAAAATT
TATATGTACAAGCTTACGTCGTTACGCCATGACAATCTACGAGCAGATCA
GTGATCAGTTTTGCCGCGTTGTGCACACCAACCTCAAGATACCACTATCC
TATTGCGAAACACGCTCACACTGGAAATTCTCGAAAAGTATCGATACAAT
GATATTTTTCTATACCCTTAGCTTTGGTATCCTTCGAGTGATACTACATT
TTATAGATTTGGTGAACATTTACTTCAGAGGGATGCGCTTGAGGCGGCCA
AGCAATCTCTTGATCTTGAGGGGCGAGAATTCGCGGGGCTTTCGAGTTCT
CAAGCACCTTTTAATGCTGAAAGCATGGATATTAGTCATATACGGCATGG
TATTCATCAAGCCGCATTACATCAATCCTTTCGTTGTGCTTTCTATCATC
ATTTTGACCATCGATGTGTTTGTATTGGTGTTGGATATCCTGCGAAAGGC
CAGGATACCTCTTGACCGCAGGGTGACCCTTTGGGAAATGATGCTCAACT
TGTGCTGTGTTTTTTACGTACAGTGGATTCTCAAGCAACAGATCCAGTAT
TAGCGTACGAATTTTTTTTGTTTGGATAAAATTATGGGCGCAATGCCGAT
ATGTGTTTATAATCATCAAAATTCTCCGTGACATGTAGCACTTCCTGAAA
TAAAATAAAGAGTCACTCGGATGTCTGTGGACTTCTTGGGACGACTGTAT
ACTTTCGAAAAAAAAAAAAAAAAA

MIP05949.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15110396..15110747 757..406 1700 98.9 Minus
chrX 22417052 chrX 15111062..15111301 240..1 1200 100 Minus
chrX 22417052 chrX 15110818..15110983 405..240 830 100 Minus
chrX 22417052 chrX 16786320..16786476 404..248 500 87.9 Minus
chrX 22417052 chrX 16786565..16786771 238..33 490 83.6 Minus
chrX 22417052 chrX 16786032..16786243 617..406 460 81.1 Minus
chrX 22417052 chrX 15096505..15096664 237..78 425 84.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15220270..15220622 758..406 1765 100 Minus
X 23542271 X 15220937..15221176 240..1 1200 100 Minus
X 23542271 X 15220693..15220858 405..240 830 100 Minus
X 23542271 X 16896935..16897141 238..33 505 84.1 Minus
X 23542271 X 16896690..16896846 404..248 500 87.9 Minus
X 23542271 X 16896402..16896613 617..406 475 81.6 Minus
X 23542271 X 15206397..15206556 237..78 425 84.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15228368..15228720 758..406 1765 100 Minus
X 23527363 X 15229035..15229274 240..1 1200 100 Minus
X 23527363 X 15228791..15228956 405..240 830 100 Minus
X 23527363 X 16904788..16904944 404..248 500 87.8 Minus
X 23527363 X 16904500..16904711 617..406 475 81.6 Minus
X 23527363 X 15214495..15214654 237..78 425 84.3 Minus
X 23527363 X 16905107..16905239 164..33 370 86.4 Minus
X 23527363 X 16905033..16905100 238..171 205 86.7 Minus
X 23527363 X 15214298..15214376 374..296 140 78.4 Minus
Blast to na_te.dros performed 2019-03-16 22:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 4576..4639 261..199 110 65.6 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 2429..2499 416..485 109 63.4 Plus

MIP05949.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:21:26 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15110818..15110982 241..405 100 <- Minus
chrX 15111062..15111301 1..240 100   Minus
chrX 15110396..15110747 406..757 98 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-10 18:01:08 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43075-RA 1..525 79..603 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:55:07 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43075-RA 1..525 79..603 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:27:25 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43075-RA 1..525 79..603 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-10 18:01:07 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43075-RA 1..525 79..603 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:55:07 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43075-RA 1..757 1..757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:25 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43075-RA 1..757 1..757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:26 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
X 15220271..15220622 406..757 100 <- Minus
X 15220693..15220857 241..405 100 <- Minus
X 15220937..15221176 1..240 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:26 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
X 15220271..15220622 406..757 100 <- Minus
X 15220693..15220857 241..405 100 <- Minus
X 15220937..15221176 1..240 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:26 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
X 15220271..15220622 406..757 100 <- Minus
X 15220693..15220857 241..405 100 <- Minus
X 15220937..15221176 1..240 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:55:07 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15114304..15114655 406..757 100 <- Minus
arm_X 15114726..15114890 241..405 100 <- Minus
arm_X 15114970..15115209 1..240 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:08 Download gff for MIP05949.complete
Subject Subject Range Query Range Percent Splice Strand
X 15228369..15228720 406..757 100 <- Minus
X 15228791..15228955 241..405 100 <- Minus
X 15229035..15229274 1..240 100   Minus

MIP05949.hyp Sequence

Translation from 0 to 602

> MIP05949.hyp
HLLIRYYYDYDYKFRKFICTSLRRYAMTIYEQISDQFCRVVHTNLKIPLS
YCETRSHWKFSKSIDTMIFFYTLSFGILRVILHFIDLVNIYFRGMRLRRP
SNLLILRGENSRGFRVLKHLLMLKAWILVIYGMVFIKPHYINPFVVLSII
ILTIDVFVLVLDILRKARIPLDRRVTLWEMMLNLCCVFYVQWILKQQIQY
*

MIP05949.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG43075-PA 174 CG43075-PA 1..174 27..200 907 100 Plus
CG33252-PA 174 CG33252-PA 1..172 27..198 633 71.5 Plus
CG32588-PA 170 CG32588-PA 1..168 27..198 496 56.1 Plus
CG9030-PB 210 CG9030-PB 7..194 33..200 221 27.7 Plus
CG43076-PA 160 CG43076-PA 1..157 27..200 153 26.7 Plus

MIP05949.pep Sequence

Translation from 0 to 602

> MIP05949.pep
HLLIRYYYDYDYKFRKFICTSLRRYAMTIYEQISDQFCRVVHTNLKIPLS
YCETRSHWKFSKSIDTMIFFYTLSFGILRVILHFIDLVNIYFRGMRLRRP
SNLLILRGENSRGFRVLKHLLMLKAWILVIYGMVFIKPHYINPFVVLSII
ILTIDVFVLVLDILRKARIPLDRRVTLWEMMLNLCCVFYVQWILKQQIQY
*

MIP05949.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19426-PA 206 GG19426-PA 6..195 32..199 242 35.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG43075-PA 174 CG43075-PA 1..174 27..200 907 100 Plus
CG33252-PA 174 CG33252-PA 1..172 27..198 633 71.5 Plus
CG32588-PA 170 CG32588-PA 1..168 27..198 496 56.1 Plus
CG9030-PB 210 CG9030-PB 7..194 33..200 221 27.7 Plus
CG43076-PA 160 CG43076-PA 1..157 27..200 153 26.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11999-PA 174 GM11999-PA 1..173 27..199 653 71.7 Plus
Dsec\GM11997-PA 174 GM11997-PA 1..173 27..199 645 71.1 Plus
Dsec\GM13355-PA 162 GM13355-PA 1..159 27..197 498 61.4 Plus
Dsec\GM13356-PA 162 GM13356-PA 1..159 27..197 498 61.4 Plus
Dsec\GM13354-PA 162 GM13354-PA 1..159 27..197 498 61.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24501-PA 174 GD24501-PA 1..173 27..199 654 72.8 Plus
Dsim\GD15816-PA 172 GD15816-PA 1..171 27..197 621 69.6 Plus
Dsim\GD24640-PA 161 GD24640-PA 1..159 27..197 466 57.3 Plus
Dsim\GD15713-PA 162 GD15713-PA 1..159 27..197 459 55.6 Plus
Dsim\GD15714-PA 155 GD15714-PA 1..130 27..168 364 54.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16063-PA 180 GE16063-PA 1..178 27..199 357 39.3 Plus
Dyak\GE16065-PA 180 GE16065-PA 1..178 27..199 355 39.9 Plus
Dyak\GE16078-PA 205 GE16078-PA 6..195 32..200 190 30.8 Plus