Clone MIP05961 Report

Search the DGRC for MIP05961

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:59
Well:61
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG43254-RB
Protein status:MIP05961.pep: gold
Sequenced Size:497

Clone Sequence Records

MIP05961.complete Sequence

497 bp assembled on 2011-08-24

GenBank Submission: BT128858.1

> MIP05961.complete
ATTGCTATTGGAGATGTCAAGATGGGGCGGTTGCTGTTTGTTCTTCTGAT
TTGTTCCCCAATACTGTCAATTAAATTCCAAGCAAATGCAGAGGATAACT
CAACAAAGAATGGCTTAGATCGAAACAGAGAAGGAGGTAAATCTTATGGA
GGTCATAAGGCGAATGTACCAGATGTTTCAAGGTTTCAAAGATCATGTTC
AACTCAAGAATGTAAGGAAAAGGAATTCAATGATATCCTCGACTCCATTC
TGAGCTCGGAAACAACTACGGAGCCTGAACGGGAAGAGGCTCCACCGAGG
AATGTTCCACAGAGACCAAATCGACCCTACATGGTTCGACCCAGCAGTAA
CGGGCACTTTCTTCATGACATTGTAACTTGGGTTGAAAGAACAAAGAGGG
CAATATTTGGATTTGGATAACATTTTTTTGCATAGTTACTTTCAAGTGAA
ATAAAAAGTATTCACCAACAAAGAAAAAAAAAAAAAAAAAAAAAAAA

MIP05961.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3565045..3565306 468..207 1310 100 Minus
chr3R 27901430 chr3R 3565472..3565620 149..1 745 100 Minus
chr3R 27901430 chr3R 3565356..3565416 208..148 305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7738985..7739246 468..207 1310 100 Minus
3R 32079331 3R 7739412..7739560 149..1 745 100 Minus
3R 32079331 3R 7739296..7739356 208..148 305 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7479816..7480077 468..207 1310 100 Minus
3R 31820162 3R 7480243..7480391 149..1 745 100 Minus
3R 31820162 3R 7480127..7480187 208..148 305 100 Minus
Blast to na_te.dros performed on 2019-03-15 10:58:00 has no hits.

MIP05961.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:58:59 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3565040..3565304 209..473 98 <- Minus
chr3R 3565356..3565415 149..208 100 <- Minus
chr3R 3565473..3565620 1..148 100   Minus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:31:00 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
CG43254-RB 1..399 22..420 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:17:24 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
CG43254-RB 1..399 22..420 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:31:00 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
CG43254-RB 4..473 1..473 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:24 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
CG43254-RB 4..473 1..473 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:58:59 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7738980..7739244 209..473 98 <- Minus
3R 7739296..7739355 149..208 100 <- Minus
3R 7739413..7739560 1..148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:58:59 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7738980..7739244 209..473 98 <- Minus
3R 7739296..7739355 149..208 100 <- Minus
3R 7739413..7739560 1..148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:58:59 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7738980..7739244 209..473 98 <- Minus
3R 7739296..7739355 149..208 100 <- Minus
3R 7739413..7739560 1..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:31:00 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3564702..3564966 209..473 98 <- Minus
arm_3R 3565018..3565077 149..208 100 <- Minus
arm_3R 3565135..3565282 1..148 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:47:28 Download gff for MIP05961.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7479811..7480075 209..473 98 <- Minus
3R 7480127..7480186 149..208 100 <- Minus
3R 7480244..7480391 1..148 100   Minus

MIP05961.hyp Sequence

Translation from 0 to 419

> MIP05961.hyp
IAIGDVKMGRLLFVLLICSPILSIKFQANAEDNSTKNGLDRNREGGKSYG
GHKANVPDVSRFQRSCSTQECKEKEFNDILDSILSSETTTEPEREEAPPR
NVPQRPNRPYMVRPSSNGHFLHDIVTWVERTKRAIFGFG*

MIP05961.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG43254-PB 132 CG43254-PB 1..132 8..139 700 100 Plus
CG43254-PA 128 CG43254-PA 1..128 8..139 663 97 Plus

MIP05961.pep Sequence

Translation from 0 to 419

> MIP05961.pep
IAIGDVKMGRLLFVLLICSPILSIKFQANAEDNSTKNGLDRNREGGKSYG
GHKANVPDVSRFQRSCSTQECKEKEFNDILDSILSSETTTEPEREEAPPR
NVPQRPNRPYMVRPSSNGHFLHDIVTWVERTKRAIFGFG*

MIP05961.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG43254-PB 132 CG43254-PB 1..132 8..139 700 100 Plus
CG43254-PA 128 CG43254-PA 1..128 8..139 663 97 Plus