Clone Sequence Records
MIP06038.complete Sequence
1376 bp assembled on 2009-02-21
GenBank Submission: BT066317.1
> MIP06038.complete
CACACACTTTCTAGGCTCACGTAAATAAGTATTTCGAAATTTTTTACTTT
TTAAACACAGCTGTTGCAAGGAAAATATAACACTTGGATAGCATATTTAA
CATAGGACCTAGTAAACTAAATGCATAGATAATCAAGAGCAACCTCCTTC
AGGCAACCTCAAAATGGCGCCCGTTTCAAAACGCCGTTTACCGAAAAAAT
CGAATACAAATGTAAAAGTAACGAGCACACTTTCGAAAATTATAATGCAA
GGAACTGAACAGTTGTTGGACTCGGGAAATAATACAAATATTCATGTTAT
TGAAAAACCCCGAATGGTGCGGTATTCAAATTCATCGCTTTACAGTGCGT
TAGCCGAGGGCCATTCCACACCGGAAATAAATATTGTGGCAAGTAATAGC
AACGCACATGGCAAGGTAGAGCTTAATTCTGAAATCAGCGATATGTCTAT
TGCATCAGTGTCGGTGAGAAATAAACCGTTTGTGAACTTTCTCCAGGATT
TCTCCATAGCTCATGGTTCCGTACCCCGAGAAAGTATTCAGCAGGCCATC
GTCGAGTGGGATAAACTGACAGCTGAGCAAAAACAAGAATATACTCCTGA
AAACTACGTTCTAAAATTATGTGATCAAGTGCATAATCGTGACGAAATTT
TAAATGCAGCTACACTGCATCCGGTATATCCAATTACAACCAAAATACAG
AATGCATTTAATGAAGCCAGTACGTCCATGAAATCTGAAAAGTATGCGAA
GAAGATCTCGTCCCCAAAAATACGTAAGACAATTAAGCGTTTAAAACCAA
AACCACGAGTTCTGGTGACTCCCAGAAAATCAGCCAAAAATGCTGGCAAA
AAGAATATAATTTATAGTGGTTCGGCTTACAAAAACTTTCTGCGAAAAAC
CGGTCAAGCCAATCCCGGTCTGATGATTGTGGAAAAGGCCTCATTATGGC
GTAAAATGACTCCTGCCGAAAGGGATCTCTATCGGAATGTGAGCAGACCA
AGGCGCCAGAACACCAAAGTATCCAGAGTTGACGCTCCCAAGCGCGAAAA
GAAGCGTAAAACCTCACAGTTCACCCAGATTTCAGAAAGTGATTTTTCGG
AAACTAATTTCAATATTCAGCGAGATGGCCAGCTAGAAGTTTGGAATGGA
AGTACAAATTCCCTAGAGGAGGCAAACGGCTCCTGGTTCAAATTTGGATA
CATTGCTAAAGCACTTGGAACAGTCAAGAGTATATTTAAATAACTATTTC
TTTTACAAATATTGTACAAAACATTTGCATAACTATAAAAAGCATTGTAA
GCACGCAATTAAACACCAAGGTCAAAGGCGAAGGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
MIP06038.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst33A-RA | 1521 | Mst33A-RA | 62..1398 | 1..1337 | 6685 | 100 | Plus |
Mst33A.a | 1254 | Mst33A.a | 70..1254 | 153..1337 | 5925 | 100 | Plus |
Mst33A-RB | 1185 | Mst33A-RB | 1..1185 | 153..1337 | 5925 | 100 | Plus |
Mst33A.a | 1254 | Mst33A.a | 1..77 | 70..146 | 385 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 11584194..11585389 | 1334..139 | 5950 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 11585448..11585586 | 139..1 | 695 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:06:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11585430..11586628 | 1337..139 | 5995 | 100 | Minus |
2L | 23513712 | 2L | 11586687..11586825 | 139..1 | 695 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11585430..11586628 | 1337..139 | 5995 | 100 | Minus |
2L | 23513712 | 2L | 11586687..11586825 | 139..1 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 23:17:51 has no hits.
MIP06038.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:18:49 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 11584194..11585389 | 139..1334 | 99 | <- | Minus |
chr2L | 11585449..11585586 | 1..138 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:06:16 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst33A-RB | 1..1080 | 164..1243 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:37:05 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst33A-RB | 1..1080 | 164..1243 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:00 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst33A-RA | 1..1080 | 164..1243 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:59 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst33A-RA | 1..1080 | 164..1243 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-21 14:06:52 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst33A-RA | 9..1342 | 1..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:37:05 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst33A-RA | 9..1342 | 1..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:00 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst33A-RA | 9..1342 | 1..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:59 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mst33A-RA | 9..1342 | 1..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:49 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11585433..11586628 | 139..1334 | 100 | <- | Minus |
2L | 11586688..11586825 | 1..138 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:49 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11585433..11586628 | 139..1334 | 100 | <- | Minus |
2L | 11586688..11586825 | 1..138 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:49 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11585433..11586628 | 139..1334 | 100 | <- | Minus |
2L | 11586688..11586825 | 1..138 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:00 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11585433..11586628 | 139..1334 | 100 | <- | Minus |
arm_2L | 11586688..11586825 | 1..138 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:10:48 Download gff for
MIP06038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11585433..11586628 | 139..1334 | 100 | <- | Minus |
2L | 11586688..11586825 | 1..138 | 100 | | Minus |
MIP06038.pep Sequence
Translation from 163 to 1242
> MIP06038.pep
MAPVSKRRLPKKSNTNVKVTSTLSKIIMQGTEQLLDSGNNTNIHVIEKPR
MVRYSNSSLYSALAEGHSTPEINIVASNSNAHGKVELNSEISDMSIASVS
VRNKPFVNFLQDFSIAHGSVPRESIQQAIVEWDKLTAEQKQEYTPENYVL
KLCDQVHNRDEILNAATLHPVYPITTKIQNAFNEASTSMKSEKYAKKISS
PKIRKTIKRLKPKPRVLVTPRKSAKNAGKKNIIYSGSAYKNFLRKTGQAN
PGLMIVEKASLWRKMTPAERDLYRNVSRPRRQNTKVSRVDAPKREKKRKT
SQFTQISESDFSETNFNIQRDGQLEVWNGSTNSLEEANGSWFKFGYIAKA
LGTVKSIFK*
MIP06038.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF15339-PA | 993 | GF15339-PA | 642..906 | 90..341 | 161 | 26 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG10306-PA | 359 | GG10306-PA | 1..311 | 1..294 | 850 | 57.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst33A-PB | 359 | CG6541-PB | 1..359 | 1..359 | 1826 | 100 | Plus |
Mst33A-PA | 359 | CG6541-PA | 1..359 | 1..359 | 1826 | 100 | Plus |
Mst33A-PC | 332 | CG6541-PC | 1..332 | 1..359 | 1659 | 92.5 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM11041-PA | 344 | GM11041-PA | 1..343 | 1..358 | 1375 | 75.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD22165-PA | 342 | GD22165-PA | 1..341 | 1..358 | 1345 | 73.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE12785-PA | 384 | GE12785-PA | 1..383 | 1..358 | 996 | 55.2 | Plus |
Dyak\GE14956-PA | 376 | GE14956-PA | 1..367 | 1..353 | 922 | 54.7 | Plus |
Dyak\GE14967-PA | 174 | GE14967-PA | 1..173 | 178..344 | 395 | 50.8 | Plus |
Dyak\GE11285-PA | 191 | GE11285-PA | 6..100 | 200..286 | 251 | 55.8 | Plus |
MIP06038.hyp Sequence
Translation from 163 to 1242
> MIP06038.hyp
MAPVSKRRLPKKSNTNVKVTSTLSKIIMQGTEQLLDSGNNTNIHVIEKPR
MVRYSNSSLYSALAEGHSTPEINIVASNSNAHGKVELNSEISDMSIASVS
VRNKPFVNFLQDFSIAHGSVPRESIQQAIVEWDKLTAEQKQEYTPENYVL
KLCDQVHNRDEILNAATLHPVYPITTKIQNAFNEASTSMKSEKYAKKISS
PKIRKTIKRLKPKPRVLVTPRKSAKNAGKKNIIYSGSAYKNFLRKTGQAN
PGLMIVEKASLWRKMTPAERDLYRNVSRPRRQNTKVSRVDAPKREKKRKT
SQFTQISESDFSETNFNIQRDGQLEVWNGSTNSLEEANGSWFKFGYIAKA
LGTVKSIFK*
MIP06038.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mst33A-PB | 359 | CG6541-PB | 1..359 | 1..359 | 1826 | 100 | Plus |
Mst33A-PA | 359 | CG6541-PA | 1..359 | 1..359 | 1826 | 100 | Plus |
Mst33A-PC | 332 | CG6541-PC | 1..332 | 1..359 | 1659 | 92.5 | Plus |