Clone MIP06038 Report

Search the DGRC for MIP06038

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:60
Well:38
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptMst33A-RA
Protein status:MIP06038.pep: gold
Sequenced Size:1376

Clone Sequence Records

MIP06038.complete Sequence

1376 bp assembled on 2009-02-21

GenBank Submission: BT066317.1

> MIP06038.complete
CACACACTTTCTAGGCTCACGTAAATAAGTATTTCGAAATTTTTTACTTT
TTAAACACAGCTGTTGCAAGGAAAATATAACACTTGGATAGCATATTTAA
CATAGGACCTAGTAAACTAAATGCATAGATAATCAAGAGCAACCTCCTTC
AGGCAACCTCAAAATGGCGCCCGTTTCAAAACGCCGTTTACCGAAAAAAT
CGAATACAAATGTAAAAGTAACGAGCACACTTTCGAAAATTATAATGCAA
GGAACTGAACAGTTGTTGGACTCGGGAAATAATACAAATATTCATGTTAT
TGAAAAACCCCGAATGGTGCGGTATTCAAATTCATCGCTTTACAGTGCGT
TAGCCGAGGGCCATTCCACACCGGAAATAAATATTGTGGCAAGTAATAGC
AACGCACATGGCAAGGTAGAGCTTAATTCTGAAATCAGCGATATGTCTAT
TGCATCAGTGTCGGTGAGAAATAAACCGTTTGTGAACTTTCTCCAGGATT
TCTCCATAGCTCATGGTTCCGTACCCCGAGAAAGTATTCAGCAGGCCATC
GTCGAGTGGGATAAACTGACAGCTGAGCAAAAACAAGAATATACTCCTGA
AAACTACGTTCTAAAATTATGTGATCAAGTGCATAATCGTGACGAAATTT
TAAATGCAGCTACACTGCATCCGGTATATCCAATTACAACCAAAATACAG
AATGCATTTAATGAAGCCAGTACGTCCATGAAATCTGAAAAGTATGCGAA
GAAGATCTCGTCCCCAAAAATACGTAAGACAATTAAGCGTTTAAAACCAA
AACCACGAGTTCTGGTGACTCCCAGAAAATCAGCCAAAAATGCTGGCAAA
AAGAATATAATTTATAGTGGTTCGGCTTACAAAAACTTTCTGCGAAAAAC
CGGTCAAGCCAATCCCGGTCTGATGATTGTGGAAAAGGCCTCATTATGGC
GTAAAATGACTCCTGCCGAAAGGGATCTCTATCGGAATGTGAGCAGACCA
AGGCGCCAGAACACCAAAGTATCCAGAGTTGACGCTCCCAAGCGCGAAAA
GAAGCGTAAAACCTCACAGTTCACCCAGATTTCAGAAAGTGATTTTTCGG
AAACTAATTTCAATATTCAGCGAGATGGCCAGCTAGAAGTTTGGAATGGA
AGTACAAATTCCCTAGAGGAGGCAAACGGCTCCTGGTTCAAATTTGGATA
CATTGCTAAAGCACTTGGAACAGTCAAGAGTATATTTAAATAACTATTTC
TTTTACAAATATTGTACAAAACATTTGCATAACTATAAAAAGCATTGTAA
GCACGCAATTAAACACCAAGGTCAAAGGCGAAGGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

MIP06038.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mst33A-RA 1521 Mst33A-RA 62..1398 1..1337 6685 100 Plus
Mst33A.a 1254 Mst33A.a 70..1254 153..1337 5925 100 Plus
Mst33A-RB 1185 Mst33A-RB 1..1185 153..1337 5925 100 Plus
Mst33A.a 1254 Mst33A.a 1..77 70..146 385 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11584194..11585389 1334..139 5950 99.8 Minus
chr2L 23010047 chr2L 11585448..11585586 139..1 695 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:06:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11585430..11586628 1337..139 5995 100 Minus
2L 23513712 2L 11586687..11586825 139..1 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11585430..11586628 1337..139 5995 100 Minus
2L 23513712 2L 11586687..11586825 139..1 695 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:17:51 has no hits.

MIP06038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:18:49 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11584194..11585389 139..1334 99 <- Minus
chr2L 11585449..11585586 1..138 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:06:16 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
Mst33A-RB 1..1080 164..1243 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:37:05 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
Mst33A-RB 1..1080 164..1243 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:37:00 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
Mst33A-RA 1..1080 164..1243 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:59 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
Mst33A-RA 1..1080 164..1243 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-21 14:06:52 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
Mst33A-RA 9..1342 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:37:05 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
Mst33A-RA 9..1342 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:37:00 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
Mst33A-RA 9..1342 1..1334 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:59 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
Mst33A-RA 9..1342 1..1334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:49 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11585433..11586628 139..1334 100 <- Minus
2L 11586688..11586825 1..138 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:49 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11585433..11586628 139..1334 100 <- Minus
2L 11586688..11586825 1..138 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:18:49 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11585433..11586628 139..1334 100 <- Minus
2L 11586688..11586825 1..138 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:37:00 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11585433..11586628 139..1334 100 <- Minus
arm_2L 11586688..11586825 1..138 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:10:48 Download gff for MIP06038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11585433..11586628 139..1334 100 <- Minus
2L 11586688..11586825 1..138 100   Minus

MIP06038.pep Sequence

Translation from 163 to 1242

> MIP06038.pep
MAPVSKRRLPKKSNTNVKVTSTLSKIIMQGTEQLLDSGNNTNIHVIEKPR
MVRYSNSSLYSALAEGHSTPEINIVASNSNAHGKVELNSEISDMSIASVS
VRNKPFVNFLQDFSIAHGSVPRESIQQAIVEWDKLTAEQKQEYTPENYVL
KLCDQVHNRDEILNAATLHPVYPITTKIQNAFNEASTSMKSEKYAKKISS
PKIRKTIKRLKPKPRVLVTPRKSAKNAGKKNIIYSGSAYKNFLRKTGQAN
PGLMIVEKASLWRKMTPAERDLYRNVSRPRRQNTKVSRVDAPKREKKRKT
SQFTQISESDFSETNFNIQRDGQLEVWNGSTNSLEEANGSWFKFGYIAKA
LGTVKSIFK*

MIP06038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15339-PA 993 GF15339-PA 642..906 90..341 161 26 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10306-PA 359 GG10306-PA 1..311 1..294 850 57.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Mst33A-PB 359 CG6541-PB 1..359 1..359 1826 100 Plus
Mst33A-PA 359 CG6541-PA 1..359 1..359 1826 100 Plus
Mst33A-PC 332 CG6541-PC 1..332 1..359 1659 92.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11041-PA 344 GM11041-PA 1..343 1..358 1375 75.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22165-PA 342 GD22165-PA 1..341 1..358 1345 73.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12785-PA 384 GE12785-PA 1..383 1..358 996 55.2 Plus
Dyak\GE14956-PA 376 GE14956-PA 1..367 1..353 922 54.7 Plus
Dyak\GE14967-PA 174 GE14967-PA 1..173 178..344 395 50.8 Plus
Dyak\GE11285-PA 191 GE11285-PA 6..100 200..286 251 55.8 Plus

MIP06038.hyp Sequence

Translation from 163 to 1242

> MIP06038.hyp
MAPVSKRRLPKKSNTNVKVTSTLSKIIMQGTEQLLDSGNNTNIHVIEKPR
MVRYSNSSLYSALAEGHSTPEINIVASNSNAHGKVELNSEISDMSIASVS
VRNKPFVNFLQDFSIAHGSVPRESIQQAIVEWDKLTAEQKQEYTPENYVL
KLCDQVHNRDEILNAATLHPVYPITTKIQNAFNEASTSMKSEKYAKKISS
PKIRKTIKRLKPKPRVLVTPRKSAKNAGKKNIIYSGSAYKNFLRKTGQAN
PGLMIVEKASLWRKMTPAERDLYRNVSRPRRQNTKVSRVDAPKREKKRKT
SQFTQISESDFSETNFNIQRDGQLEVWNGSTNSLEEANGSWFKFGYIAKA
LGTVKSIFK*

MIP06038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Mst33A-PB 359 CG6541-PB 1..359 1..359 1826 100 Plus
Mst33A-PA 359 CG6541-PA 1..359 1..359 1826 100 Plus
Mst33A-PC 332 CG6541-PC 1..332 1..359 1659 92.5 Plus