MIP06162.complete Sequence
796 bp assembled on 2009-02-20
GenBank Submission: BT064655.1
> MIP06162.complete
CTAAATACTTACAAAATTTTGTTTTCCATTGAGATCGTCTTATAAAAATA
TTTTTTATATAAATATTGGTTCAAAATTTGCAAGACTCGGCTTCTTACCA
ACAGATGTACCATGTCGAATTATAGGGTTACATATAAAAATCGATGCATT
AGCTGTGGCGTCGAAGTACCAGTCCTTTCCACAAATGGATGCCATTTCAA
AGTTCAGGACAAATTTAATTCTTGTGGCTCCAAAATAAGCAATCCTCGAA
AACGGCCGAGTCAAATAAAAAGGCACAGGAATATTTCTCAAAGAAAGCTA
AATAATGGTTTTAAATGGTCTTCATCATCTACGAAAAAACGATTCTATCC
GTTAGTAAAGAAACAAAAATTGTTGATGTCCTCAGAGCCCTCTCATAAGG
CTCTAATTTTAAGAGAGATGATTAGGTTAGGAAGAAAACCGAATCGAAAG
TTCGAAAAGGCTGCGAGAAATAGTGTATTTCCGGGCATCTGCCGTACGAT
ATTGAAACTGCACCAGTATACTAATCTTGTACAGTAGAGATTACTGATGT
CACAGATTCTTTTGAGATCAAAGTCCCCACCATATGGAATCATTTGGATG
GATGGATCAATGGATGTAGATGAAATGGGTACATGCAGACATATATTTTT
AGAAGAATCAATGGAAATTTAAGTATTTAAATATTTATTAAGCTAACGTA
CTTATATTGTGTACAACAGTTTTCAATTAAATGGAATAGGAAAATAAAGT
CCTGGATGAGGTACATTTACATTGTAAAAAAAAAAAAAAAAAAAAA
MIP06162.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DMG6-MB6.chr2L.17.031.a | 799 | DMG6-MB6.chr2L.17.031.a | 25..799 | 1..775 | 3875 | 100 | Plus |
FucTB-RA | 1663 | FucTB-RA | 1608..1663 | 778..723 | 280 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 9426848..9427332 | 1..485 | 2395 | 99.6 | Plus |
chr2L | 23010047 | chr2L | 9427385..9427676 | 484..775 | 1445 | 99.7 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:06:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:35:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9427912..9428396 | 1..485 | 2425 | 100 | Plus |
2L | 23513712 | 2L | 9428449..9428743 | 484..778 | 1475 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9427912..9428396 | 1..485 | 2425 | 100 | Plus |
2L | 23513712 | 2L | 9428449..9428743 | 484..778 | 1475 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 19:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
looper1 | 1881 | looper1 LOOPER1_DM 1881bp | 1785..1822 | 676..639 | 118 | 78.9 | Minus |
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 194..280 | 639..722 | 112 | 63.6 | Plus |
MIP06162.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:36:32 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 9426848..9427331 | 1..484 | 93 | -> | Plus |
chr2L | 9427386..9427676 | 485..775 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:36:43 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42847-RA | 1..426 | 112..537 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:24 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42847-RA | 1..426 | 112..537 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:18 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42847-RA | 1..426 | 112..537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:36:43 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42847-RA | 1..775 | 1..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:24 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42847-RA | 43..817 | 1..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:18 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42847-RA | 43..817 | 1..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:32 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9427912..9428395 | 1..484 | 100 | -> | Plus |
2L | 9428450..9428740 | 485..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:32 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9427912..9428395 | 1..484 | 100 | -> | Plus |
2L | 9428450..9428740 | 485..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:32 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9427912..9428395 | 1..484 | 100 | -> | Plus |
2L | 9428450..9428740 | 485..775 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:24 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9427912..9428395 | 1..484 | 100 | -> | Plus |
arm_2L | 9428450..9428740 | 485..775 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:10:21 Download gff for
MIP06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9427912..9428395 | 1..484 | 100 | -> | Plus |
2L | 9428450..9428740 | 485..775 | 100 | | Plus |
MIP06162.pep Sequence
Translation from 111 to 536
> MIP06162.pep
MSNYRVTYKNRCISCGVEVPVLSTNGCHFKVQDKFNSCGSKISNPRKRPS
QIKRHRNISQRKLNNGFKWSSSSTKKRFYPLVKKQKLLMSSEPSHKALIL
REMIRLGRKPNRKFEKAARNSVFPGICRTILKLHQYTNLVQ*
MIP06162.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42847-PA | 141 | CG42847-PA | 1..141 | 1..141 | 743 | 100 | Plus |
MIP06162.hyp Sequence
Translation from 111 to 536
> MIP06162.hyp
MSNYRVTYKNRCISCGVEVPVLSTNGCHFKVQDKFNSCGSKISNPRKRPS
QIKRHRNISQRKLNNGFKWSSSSTKKRFYPLVKKQKLLMSSEPSHKALIL
REMIRLGRKPNRKFEKAARNSVFPGICRTILKLHQYTNLVQ*
MIP06162.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42847-PA | 141 | CG42847-PA | 1..141 | 1..141 | 743 | 100 | Plus |