Clone MIP06209 Report

Search the DGRC for MIP06209

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:62
Well:9
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptSfp33A1-RA
Protein status:MIP06209.pep: gold
Sequenced Size:367

Clone Sequence Records

MIP06209.complete Sequence

367 bp assembled on 2009-02-23

GenBank Submission: BT066318.1

> MIP06209.complete
ACGAAATGAAGTTCTTCATTTTGATTTCATTCTTACTGGTCTGTCAAGGG
TCCAACGAAGAGGAGGATAACATAATAGCCGAGTTGTGCTTCAATCCGAA
TTCTGGACCTCCTTGCCAGAAATTAAAAACATATTATTGGGATAAGGAAA
AGAATCGATGCGTGCTCTCTCGGTATTTAATGCAGCCTTGTGGTTTCTTT
GACACAATAGACATGTGCGATAAAATATGCACCAAGGAATCGTGGACAAT
ATCTCATTTGGAAGTATATGTTCGAAATATGCCTTAAAATATACTTGTTT
TTCAGCTGCCAATTGACATTTAAGAAGTGGTCACGCTTATTAAAAAAAAA
AAAAAAAAAAAAAAAAA

MIP06209.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp33A1-RA 363 Sfp33A1-RA 19..361 1..343 1715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11752749..11753018 341..81 1165 96.3 Minus
chr2L 23010047 chr2L 11753077..11753157 81..1 390 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:06:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11754083..11754345 343..81 1315 100 Minus
2L 23513712 2L 11754404..11754484 81..1 405 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11754083..11754345 343..81 1315 100 Minus
2L 23513712 2L 11754404..11754484 81..1 405 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:35:45 has no hits.

MIP06209.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:36:44 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11752749..11753017 82..341 96 <- Minus
chr2L 11753077..11753157 1..81 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:06:28 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 1..282 6..287 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:36:00 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 1..282 6..287 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:39 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 1..282 6..287 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:38 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 1..282 6..287 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-23 16:45:28 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 19..323 1..305 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:36:00 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 19..359 1..341 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:39 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 19..359 1..341 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:38 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp33A1-RA 19..359 1..341 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:44 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11754085..11754344 82..341 100 <- Minus
2L 11754404..11754484 1..81 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:44 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11754085..11754344 82..341 100 <- Minus
2L 11754404..11754484 1..81 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:36:44 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11754085..11754344 82..341 100 <- Minus
2L 11754404..11754484 1..81 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:39 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11754085..11754344 82..341 100 <- Minus
arm_2L 11754404..11754484 1..81 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:09:31 Download gff for MIP06209.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11754085..11754344 82..341 100 <- Minus
2L 11754404..11754484 1..81 100   Minus

MIP06209.pep Sequence

Translation from 2 to 286

> MIP06209.pep
EMKFFILISFLLVCQGSNEEEDNIIAELCFNPNSGPPCQKLKTYYWDKEK
NRCVLSRYLMQPCGFFDTIDMCDKICTKESWTISHLEVYVRNMP*

MIP06209.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp33A1-PA 93 CG42472-PA 1..93 2..94 520 100 Plus

MIP06209.hyp Sequence

Translation from 2 to 286

> MIP06209.hyp
EMKFFILISFLLVCQGSNEEEDNIIAELCFNPNSGPPCQKLKTYYWDKEK
NRCVLSRYLMQPCGFFDTIDMCDKICTKESWTISHLEVYVRNMP*

MIP06209.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp33A1-PA 93 CG42472-PA 1..93 2..94 520 100 Plus