Clone Sequence Records
MIP06308.complete Sequence
2550 bp assembled on 2011-03-03
GenBank Submission: BT126123.1
> MIP06308.complete
CAAAAATCTAAATGTTAAATTTTTTATTTTCATCTGAGCTATAATGTGCA
TTTGCTCAACTCGTGTACTCAAAATCGTTCTTTTGGCATTCATACATCTT
GCCGCAGGATTTAATGGCGCGCAAATAGCGAAGGACATTACTTTGCTGGA
TAAACTGGTGGGTCACCATCATGTTATGCTTACTATAAGTCTAGCACTAT
GTGTTATCATACTAGTTGTTCTCTTAGTTGCCATTTTTGCTGCTATTCGT
CATCATATATTGGCTTTAAACGTGACGCTTGTTTTCTTGATTTTTAAGTG
TGTAGCAAAGGGTATTATCGTAATCGTTTGCGTATTAACCGCAGAAACAG
GTATTGAAAATACTGCCGCACATTTTTGGTTCTTTCTATGCTGGAAATTC
ACGTGTTGCTGTATGCTCTTTAATCTATTCTTTTATATACGGCTAACAGA
GAATTCAAGACAAGCTGACTAATTCTTATAAAGAGTATTGATTGTGTTCT
TCGAACGAAATATTTTCAAATTCTATCTTGACAGAATGTGCTTTTGTCCG
ACACTTGGTCTCAAAATTGTACTTTTGTTAGTAATACCTATAACCGCAGG
AATTAATGGTGCTCAAATAGCCAAAGATGTTTCTATATTGAATTTATTAA
AGGGATACCATTATATTATGCTTATTATAAGCCTATCCCTGTCCGTAGTT
ATACTGGCGACTCTGGTTCTTTTAATATATGCGGCGATCTGTAATAAAAT
TCGAATTCTGAAAGTGATGATCTTTGTTTATGTAGCCATCGTCGTGGTGA
AACTGATAATTCTGTTCGTGTGTCTAAGTACTGAATTGAATCCTGACAAG
ACGACAGCCCATCCCATATTTATGATATGCTGGCTCCTTACGTTCTTATG
TATGGCCGTTATAATAATATACTGGCTTCGGCTACATGACCTTGCCAACG
AAGACAATTAGACTGGTATTGAAATGAATACTATGAATACTATGAATACT
ATCTGGCATAAACGCAAAATATCGTATTACCTCCTCATTAGATCCGTCAT
TGTGATTTTCAGTGATTAATGTTAAGATATTAACTATGTCGAATAACCAA
CTGCATTAGAGCAAAAACGGAAACTCACTGGAAACTTCATTAATGAATTC
AATTGGAGTTAATACCAAAAGCTAGCTGAATTTGCAAATTATAATGGACA
TCGTATTGTTATACCATCGAAAGCAGTGTCATTTTAGGTCAAAAATATAT
ATATTCGTATTTTTCGGATAAAATATGGTGGATAATGAGGAAACGGGATG
CCTTCAAAGATTACTCAGCGTTGGAAAGCTACAGATTTGCAAGTTCATAA
TCTACTTTGTGTGGTTGGTCAATTTCATTTTCAGCTGTGCGGATATTTAC
ATATACTATTTCATACTGAAGGAACACATGCCTTGCTGGGATTGTTTGTT
CAGGTCCTACATGATAATCGCTCTAACCGTAAATGCCCTAATGGCGCCGC
TGCTGATAGTCGGTTTTTTCTTCATATATTCGCATTTATGCCGCGAAATA
CGCATTTATGCCACAGTACTCTTCCTGGCAACATGGTTGCAGATGATGCT
GACTATACTGTTTGCACAACAGTACCAAATTGTTGGAGATGTACTTCGAA
TATGGATGAATCGCAAGAGTTTGGAATTCTACGAAAGTCGCTGCCAGTGC
TGCGGAGTTTTGGGACCTGACGACTACAAGTTGGGCGATCTGAATATCCC
AAAATCCTGTTACAAGAATGGCAGTGAAAGGGATGAGGACCTGTACCGAT
CAGGCTGCTCCACGCGCTCCATAAAGCCCGCGTCGCCCATCATCCATGTG
ATCTCCTTCGTAATTCAGTATGTTTTAGTCATATGCATTGAGGTATTCCT
TATTATCCTGTTAAGGAGCAAATCCCAACCCACAAGTATGTGGTCTGAGC
GGGTCACCGAAAGGTTTGGTAGTGTAAAAAAGTGACTTGCAGTTCTATTC
GGATTTGGGAAGCAATCCTAAAGAACATCTCTGAACTTTAGGGCTATTTT
CCAACATTGCATGGAACTTAAGCAGCAGATTTTCATGTGAATTGCAATTT
TGGGTGCGGTTTTCAATTCACATTGTACCGGGCATGAGTATTGGCATTCT
GGCGGGCGAGACAAATTGGATGCTGCCGGCTATCGTCATATTTCACGGAC
TGCAATCAATAACGATAAACACTTGAGTCGCAAATCCAATGTCCAGAATC
CTGTCCAACAACGGCATGCATATGGATGAGCCAATAAAGAAATCAACAAA
GCATGTCGGGCGATTGAAAAAGTATTGCAAATACCCCGGATAGCTGGGGA
TTCGGACACGGAATTGGACTCCAATCCGGACAATATGCAAATGCAGCTAA
GCAGAAAATATTCAAGGACGATCCAGCCCCACCCCCTTCAACAAACGCTC
AAGTTTATATATTCATTTTGTGTCCCTCGTCCCGCGCATAAATTTTATTG
TTGTCAACATTAAATTCTAGTCGTGAAAAACAAAAAAAAAAAAAAAAAAA
MIP06308.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 7460271..7460935 | 1867..2531 | 3265 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 7458946..7459203 | 892..1149 | 1290 | 100 | Plus |
chr3L | 24539361 | chr3L | 7459605..7459784 | 1377..1556 | 900 | 100 | Plus |
chr3L | 24539361 | chr3L | 7460047..7460223 | 1692..1868 | 885 | 100 | Plus |
chr3L | 24539361 | chr3L | 7457798..7457965 | 107..274 | 840 | 100 | Plus |
chr3L | 24539361 | chr3L | 7458529..7458696 | 599..766 | 840 | 100 | Plus |
chr3L | 24539361 | chr3L | 7459379..7459547 | 1208..1376 | 830 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 7459851..7459985 | 1557..1691 | 675 | 100 | Plus |
chr3L | 24539361 | chr3L | 7458028..7458157 | 274..403 | 650 | 100 | Plus |
chr3L | 24539361 | chr3L | 7458753..7458879 | 766..892 | 635 | 100 | Plus |
chr3L | 24539361 | chr3L | 7457637..7457743 | 1..107 | 535 | 100 | Plus |
chr3L | 24539361 | chr3L | 7458374..7458477 | 496..599 | 520 | 100 | Plus |
chr3L | 24539361 | chr3L | 7458214..7458307 | 403..496 | 470 | 100 | Plus |
chr3L | 24539361 | chr3L | 7459257..7459319 | 1150..1212 | 300 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7468144..7468810 | 1867..2533 | 3335 | 100 | Plus |
3L | 28110227 | 3L | 7466818..7467075 | 892..1149 | 1290 | 100 | Plus |
3L | 28110227 | 3L | 7467478..7467657 | 1377..1556 | 900 | 100 | Plus |
3L | 28110227 | 3L | 7467920..7468096 | 1692..1868 | 885 | 100 | Plus |
3L | 28110227 | 3L | 7467252..7467420 | 1208..1376 | 845 | 100 | Plus |
3L | 28110227 | 3L | 7465670..7465837 | 107..274 | 840 | 100 | Plus |
3L | 28110227 | 3L | 7466401..7466568 | 599..766 | 840 | 100 | Plus |
3L | 28110227 | 3L | 7467724..7467858 | 1557..1691 | 675 | 100 | Plus |
3L | 28110227 | 3L | 7465900..7466029 | 274..403 | 650 | 100 | Plus |
3L | 28110227 | 3L | 7466625..7466751 | 766..892 | 635 | 100 | Plus |
3L | 28110227 | 3L | 7465509..7465615 | 1..107 | 535 | 100 | Plus |
3L | 28110227 | 3L | 7466246..7466349 | 496..599 | 520 | 100 | Plus |
3L | 28110227 | 3L | 7466086..7466179 | 403..496 | 470 | 100 | Plus |
3L | 28110227 | 3L | 7467129..7467191 | 1150..1212 | 300 | 98.4 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 7461244..7461910 | 1867..2533 | 3335 | 100 | Plus |
3L | 28103327 | 3L | 7459918..7460175 | 892..1149 | 1290 | 100 | Plus |
3L | 28103327 | 3L | 7460578..7460757 | 1377..1556 | 900 | 100 | Plus |
3L | 28103327 | 3L | 7461020..7461196 | 1692..1868 | 885 | 100 | Plus |
3L | 28103327 | 3L | 7460352..7460520 | 1208..1376 | 845 | 100 | Plus |
3L | 28103327 | 3L | 7459501..7459668 | 599..766 | 840 | 100 | Plus |
3L | 28103327 | 3L | 7458770..7458937 | 107..274 | 840 | 100 | Plus |
3L | 28103327 | 3L | 7460824..7460958 | 1557..1691 | 675 | 100 | Plus |
3L | 28103327 | 3L | 7459000..7459129 | 274..403 | 650 | 100 | Plus |
3L | 28103327 | 3L | 7459725..7459851 | 766..892 | 635 | 100 | Plus |
3L | 28103327 | 3L | 7458609..7458715 | 1..107 | 535 | 100 | Plus |
3L | 28103327 | 3L | 7459346..7459449 | 496..599 | 520 | 100 | Plus |
3L | 28103327 | 3L | 7459186..7459279 | 403..496 | 470 | 100 | Plus |
3L | 28103327 | 3L | 7460229..7460291 | 1150..1212 | 300 | 98.4 | Plus |
Blast to na_te.dros performed on 2019-03-16 22:18:39 has no hits.
MIP06308.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:19:29 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 7460047..7460223 | 1692..1868 | 100 | -> | Plus |
chr3L | 7457637..7457742 | 1..106 | 100 | -> | Plus |
chr3L | 7457798..7457965 | 107..274 | 100 | -> | Plus |
chr3L | 7458029..7458157 | 275..403 | 100 | -> | Plus |
chr3L | 7458215..7458307 | 404..496 | 100 | -> | Plus |
chr3L | 7458375..7458476 | 497..598 | 100 | -> | Plus |
chr3L | 7458529..7458696 | 599..766 | 100 | -> | Plus |
chr3L | 7458754..7458879 | 767..892 | 100 | -> | Plus |
chr3L | 7458947..7459203 | 893..1149 | 88 | -> | Plus |
chr3L | 7459257..7459315 | 1150..1208 | 100 | -> | Plus |
chr3L | 7459380..7459547 | 1209..1376 | 99 | -> | Plus |
chr3L | 7459605..7459784 | 1377..1556 | 100 | -> | Plus |
chr3L | 7459851..7459985 | 1557..1691 | 100 | -> | Plus |
chr3L | 7460273..7460935 | 1869..2531 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-03 17:41:13 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66A-RC | 1..711 | 1275..1985 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:53:37 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66A-RD | 1..711 | 1275..1985 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:26:05 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66A-RD | 1..711 | 1275..1985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-03 17:41:13 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66A-RD | 1..2531 | 1..2531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:53:37 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42660-RA | 1..2531 | 1..2531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:05 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66A-RD | 1..2531 | 1..2531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:19:29 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7467920..7468096 | 1692..1868 | 100 | -> | Plus |
3L | 7465509..7465614 | 1..106 | 100 | -> | Plus |
3L | 7465670..7465837 | 107..274 | 100 | -> | Plus |
3L | 7465901..7466029 | 275..403 | 100 | -> | Plus |
3L | 7466087..7466179 | 404..496 | 100 | -> | Plus |
3L | 7466247..7466348 | 497..598 | 100 | -> | Plus |
3L | 7466401..7466568 | 599..766 | 100 | -> | Plus |
3L | 7466626..7466751 | 767..892 | 100 | -> | Plus |
3L | 7466819..7467075 | 893..1149 | 100 | -> | Plus |
3L | 7467129..7467187 | 1150..1208 | 100 | -> | Plus |
3L | 7467253..7467420 | 1209..1376 | 100 | -> | Plus |
3L | 7467478..7467657 | 1377..1556 | 100 | -> | Plus |
3L | 7467724..7467858 | 1557..1691 | 100 | -> | Plus |
3L | 7468146..7468808 | 1869..2531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:19:29 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7467920..7468096 | 1692..1868 | 100 | -> | Plus |
3L | 7465509..7465614 | 1..106 | 100 | -> | Plus |
3L | 7465670..7465837 | 107..274 | 100 | -> | Plus |
3L | 7465901..7466029 | 275..403 | 100 | -> | Plus |
3L | 7466087..7466179 | 404..496 | 100 | -> | Plus |
3L | 7466247..7466348 | 497..598 | 100 | -> | Plus |
3L | 7466401..7466568 | 599..766 | 100 | -> | Plus |
3L | 7466626..7466751 | 767..892 | 100 | -> | Plus |
3L | 7466819..7467075 | 893..1149 | 100 | -> | Plus |
3L | 7467129..7467187 | 1150..1208 | 100 | -> | Plus |
3L | 7467253..7467420 | 1209..1376 | 100 | -> | Plus |
3L | 7467478..7467657 | 1377..1556 | 100 | -> | Plus |
3L | 7467724..7467858 | 1557..1691 | 100 | -> | Plus |
3L | 7468146..7468808 | 1869..2531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:19:29 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7467920..7468096 | 1692..1868 | 100 | -> | Plus |
3L | 7465509..7465614 | 1..106 | 100 | -> | Plus |
3L | 7465670..7465837 | 107..274 | 100 | -> | Plus |
3L | 7465901..7466029 | 275..403 | 100 | -> | Plus |
3L | 7466087..7466179 | 404..496 | 100 | -> | Plus |
3L | 7466247..7466348 | 497..598 | 100 | -> | Plus |
3L | 7466401..7466568 | 599..766 | 100 | -> | Plus |
3L | 7466626..7466751 | 767..892 | 100 | -> | Plus |
3L | 7466819..7467075 | 893..1149 | 100 | -> | Plus |
3L | 7467129..7467187 | 1150..1208 | 100 | -> | Plus |
3L | 7467253..7467420 | 1209..1376 | 100 | -> | Plus |
3L | 7467478..7467657 | 1377..1556 | 100 | -> | Plus |
3L | 7467724..7467858 | 1557..1691 | 100 | -> | Plus |
3L | 7468146..7468808 | 1869..2531 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:53:37 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7461020..7461196 | 1692..1868 | 100 | -> | Plus |
arm_3L | 7458609..7458714 | 1..106 | 100 | -> | Plus |
arm_3L | 7458770..7458937 | 107..274 | 100 | -> | Plus |
arm_3L | 7459001..7459129 | 275..403 | 100 | -> | Plus |
arm_3L | 7459187..7459279 | 404..496 | 100 | -> | Plus |
arm_3L | 7459347..7459448 | 497..598 | 100 | -> | Plus |
arm_3L | 7459501..7459668 | 599..766 | 100 | -> | Plus |
arm_3L | 7459726..7459851 | 767..892 | 100 | -> | Plus |
arm_3L | 7459919..7460175 | 893..1149 | 100 | -> | Plus |
arm_3L | 7460229..7460287 | 1150..1208 | 100 | -> | Plus |
arm_3L | 7460353..7460520 | 1209..1376 | 100 | -> | Plus |
arm_3L | 7460578..7460757 | 1377..1556 | 100 | -> | Plus |
arm_3L | 7460824..7460958 | 1557..1691 | 100 | -> | Plus |
arm_3L | 7461246..7461908 | 1869..2531 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:00:31 Download gff for
MIP06308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7459919..7460175 | 893..1149 | 100 | -> | Plus |
3L | 7460229..7460287 | 1150..1208 | 100 | -> | Plus |
3L | 7460353..7460520 | 1209..1376 | 100 | -> | Plus |
3L | 7460578..7460757 | 1377..1556 | 100 | -> | Plus |
3L | 7460824..7460958 | 1557..1691 | 100 | -> | Plus |
3L | 7461020..7461196 | 1692..1868 | 100 | -> | Plus |
3L | 7461246..7461908 | 1869..2531 | 100 | | Plus |
3L | 7458609..7458714 | 1..106 | 100 | -> | Plus |
3L | 7458770..7458937 | 107..274 | 100 | -> | Plus |
3L | 7459001..7459129 | 275..403 | 100 | -> | Plus |
3L | 7459187..7459279 | 404..496 | 100 | -> | Plus |
3L | 7459347..7459448 | 497..598 | 100 | -> | Plus |
3L | 7459501..7459668 | 599..766 | 100 | -> | Plus |
3L | 7459726..7459851 | 767..892 | 100 | -> | Plus |
MIP06308.pep Sequence
Translation from 535 to 960
> MIP06308.pep
MCFCPTLGLKIVLLLVIPITAGINGAQIAKDVSILNLLKGYHYIMLIISL
SLSVVILATLVLLIYAAICNKIRILKVMIFVYVAIVVVKLIILFVCLSTE
LNPDKTTAHPIFMICWLLTFLCMAVIIIYWLRLHDLANEDN*
MIP06308.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42661-PB | 141 | CG42661-PB | 1..141 | 1..141 | 709 | 100 | Plus |
CG42661-PA | 141 | CG42661-PA | 1..141 | 1..141 | 709 | 100 | Plus |
CG42660-PB | 142 | CG42660-PB | 1..134 | 1..133 | 283 | 45.5 | Plus |
CG42660-PA | 142 | CG42660-PA | 1..134 | 1..133 | 283 | 45.5 | Plus |
CG43292-PA | 142 | CG43292-PA | 1..133 | 1..135 | 147 | 28.1 | Plus |
MIP06308.hyp Sequence
Translation from 1274 to 1984
> MIP06308.hyp
MVDNEETGCLQRLLSVGKLQICKFIIYFVWLVNFIFSCADIYIYYFILKE
HMPCWDCLFRSYMIIALTVNALMAPLLIVGFFFIYSHLCREIRIYATVLF
LATWLQMMLTILFAQQYQIVGDVLRIWMNRKSLEFYESRCQCCGVLGPDD
YKLGDLNIPKSCYKNGSERDEDLYRSGCSTRSIKPASPIIHVISFVIQYV
LVICIEVFLIILLRSKSQPTSMWSERVTERFGSVKK*
MIP06308.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66A-PC | 236 | CG16991-PC | 1..236 | 1..236 | 1251 | 100 | Plus |
Tsp66A-PD | 236 | CG16991-PD | 1..236 | 1..236 | 1251 | 100 | Plus |
Tsp66A-PE | 238 | CG16991-PE | 1..238 | 1..236 | 1238 | 99.2 | Plus |
Tsp66A-PF | 234 | CG16991-PF | 1..234 | 1..236 | 1224 | 99.2 | Plus |