Clone MIP06608 Report

Search the DGRC for MIP06608

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:66
Well:8
Vector:pOT2
Associated Gene/TranscriptCG9589-RA
Protein status:MIP06608.pep: gold
Sequenced Size:966

Clone Sequence Records

MIP06608.complete Sequence

966 bp assembled on 2009-02-24

GenBank Submission: BT070228.1

> MIP06608.complete
AATATCAAATTGTCCATTCTCTAGTTAAGTCCAGCAAAATTTAGTTAGAA
TCATGGGAGATCGCAACAAGCAGCCGGTTATTCTGCTGAAGGTTCCGTCC
TCCGATGATTTCTATGGTTCGGCGTTGCGCAGCCATAACCTGGATCCCAT
CTTCATTACTCCCTCGCATTTTGTGTTCAAGAATCTGAAGCAATTGCAAG
CCAAGTTGCATGAGCCGCACAAATATGCCGGGATTATATTTGCATCCCCG
CGCTGTGTCCAAGCTGTAAACGAGGCACTAGGAAAGACACCACTTCCTAG
TTGCTGGCGTGCGTTACACAATTATTCCCTAGGCAAGAACACGCACAGCG
CCGCCTGGATAACATTCCAGAATCTTCCGACTCTGGGCGATCATGCCGTG
AATGCAAACAATCTGTGCGATCTGATCGTGGAGACGTTTGGACCCAAGAG
GGATCTGCCACTGCTCATGCCCTGCGGCAATGGCGTGGGTCAGACACTGC
GCCTCCGTTTGGTCGCCCAGGGATTCCGGGTGGATGCCTGCGAAGTGTAC
GAGAGTCGGTCGCATCCGGATTTCGTCAATCAGATGCGGCACGCCCTCAA
ATTCAAGCGAATGGAAACGATTGTGTTCTTCGGACCCTCCAGTGTCCGCA
GCTCCTTGGAGTTCTTTGGGAACTACAACGTTTCGCTTAAGGATCGCAAG
CTGATAGCCGTGGGCAGTGGCACCAGGAAGGCAATGGAGGAATCTGGAAT
TAAGGCGGACGGAGTCGTGAATGCTGCTGACGTCGACCGCCTGATAAATA
TCATCAAAACATAGTTTAGTATCGATCATTTTACGTTTTGTTTTTACCAG
TTTTTACTTTTGGTATGATTTCAAAATCTGTTTGGTGTCCTTTAAAGAAA
TGAGGACAAAAGTGTGTTATTAATTAAAGTGTTTCAACAAAGTAAAAAAA
AAAAAAAAAAAAAAAA

MIP06608.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-RA 974 CG9589-RA 32..974 1..943 4715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11613153..11614095 1..943 4670 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:07:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15788552..15789495 1..944 4720 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15529383..15530326 1..944 4720 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:15:45 has no hits.

MIP06608.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:16:44 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11613153..11614095 1..943 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:06:38 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 1..762 53..814 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:37:45 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 1..762 53..814 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:22:14 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 1..762 53..814 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:30:05 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 1..762 53..814 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-25 08:39:43 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 32..972 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:37:45 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 32..972 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:14 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 32..974 1..943 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:30:05 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
CG9589-RA 32..974 1..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:44 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15788552..15789494 1..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:44 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15788552..15789494 1..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:16:44 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15788552..15789494 1..943 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:14 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11614274..11615216 1..943 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:11:35 Download gff for MIP06608.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15529383..15530325 1..943 100   Plus

MIP06608.hyp Sequence

Translation from 52 to 813

> MIP06608.hyp
MGDRNKQPVILLKVPSSDDFYGSALRSHNLDPIFITPSHFVFKNLKQLQA
KLHEPHKYAGIIFASPRCVQAVNEALGKTPLPSCWRALHNYSLGKNTHSA
AWITFQNLPTLGDHAVNANNLCDLIVETFGPKRDLPLLMPCGNGVGQTLR
LRLVAQGFRVDACEVYESRSHPDFVNQMRHALKFKRMETIVFFGPSSVRS
SLEFFGNYNVSLKDRKLIAVGSGTRKAMEESGIKADGVVNAADVDRLINI
IKT*

MIP06608.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-PA 253 CG9589-PA 1..253 1..253 1327 100 Plus
CG1885-PB 277 CG1885-PB 1..253 1..251 513 41.9 Plus
CG1885-PA 277 CG1885-PA 1..253 1..251 513 41.9 Plus

MIP06608.pep Sequence

Translation from 52 to 813

> MIP06608.pep
MGDRNKQPVILLKVPSSDDFYGSALRSHNLDPIFITPSHFVFKNLKQLQA
KLHEPHKYAGIIFASPRCVQAVNEALGKTPLPSCWRALHNYSLGKNTHSA
AWITFQNLPTLGDHAVNANNLCDLIVETFGPKRDLPLLMPCGNGVGQTLR
LRLVAQGFRVDACEVYESRSHPDFVNQMRHALKFKRMETIVFFGPSSVRS
SLEFFGNYNVSLKDRKLIAVGSGTRKAMEESGIKADGVVNAADVDRLINI
IKT*

MIP06608.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18540-PA 253 GF18540-PA 1..253 1..253 1102 77.1 Plus
Dana\GF19123-PA 276 GF19123-PA 1..253 1..251 528 41.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16951-PA 253 GG16951-PA 1..253 1..253 1311 96 Plus
Dere\GG19019-PA 277 GG19019-PA 1..253 1..251 538 41.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12072-PA 271 GH12072-PA 1..251 1..251 561 43.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9589-PA 253 CG9589-PA 1..253 1..253 1327 100 Plus
CG1885-PB 277 CG1885-PB 1..253 1..251 513 41.9 Plus
CG1885-PA 277 CG1885-PA 1..253 1..251 513 41.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15566-PA 269 GI15566-PA 1..251 1..251 571 44.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22234-PA 254 GL22234-PA 1..253 1..252 803 60.1 Plus
Dper\GL13032-PA 284 GL13032-PA 1..250 1..251 499 42.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21896-PA 254 GA21896-PA 1..253 1..252 802 60.1 Plus
Dpse\GA15099-PA 287 GA15099-PA 1..253 1..251 549 44.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24258-PA 253 GM24258-PA 1..253 1..253 1319 97.6 Plus
Dsec\GM13694-PA 277 GM13694-PA 1..253 1..251 529 41.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19046-PA 253 GD19046-PA 1..253 1..253 1313 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15178-PA 337 GJ15178-PA 81..319 13..251 548 45.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19190-PA 250 GK19190-PA 1..248 1..251 788 59 Plus
Dwil\GK16872-PA 275 GK16872-PA 1..254 1..251 548 44.9 Plus
Dwil\GK16861-PA 703 GK16861-PA 562..675 51..164 309 52.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24337-PA 252 GE24337-PA 2..251 3..252 1289 95.6 Plus
Dyak\GE17428-PA 277 GE17428-PA 1..253 1..251 533 41.5 Plus