Clone Sequence Records
MIP06948.complete Sequence
1122 bp assembled on 2009-03-10
GenBank Submission: BT072854.1
> MIP06948.complete
CTCGGGTTACCATGTCGGTGCAATGGAAAATTGTCATAATGAGCTTCTTT
CTGTTCAGTACCGCGCACGCTGGAGGATATTGTGGACCCAACAAGATATA
TGCGTGTGTGCCTACGCTATTTTGTAAAGATGGTCGCAGCACGCAAAGAA
ATCCCGCTGCTCACTTCAACAGGCAGTGCTTTTCGTTTGAATCTTGCTGT
GACGTTAATAGGGTAATTTATGGAATGCGGTACACTGGAGGAGATTTCGA
GCCAGGTCCATACGAACAAATCAGCGAGCCATTCAACAATGCTAGTGGAA
AAACTTCTGGCACAAACAGTCAACAGTCAACTGGTAATACGGGTGGCACT
AGTCCGACCTTGAAAAAAAAGGGCGGAGTGTCATCTATAACGAACATTCA
AAATACTAATAATGGCGGAGGCAAAAATTTTACAACAAATAGTCAAATGC
CGAGTTATACGATGAAAAGTCAGCCATCCAATAACGCAGGTGGAAAAACC
ACTACTGCAAACAATCAGGCACCCAGTGACTCAGATGGAAAAACTTTTAC
ACACAGTACAAATTTACATGCTCATAGTTATCTTAACAATAATTCCGGAA
AAACTAACTTAGGAAACCCATCTACGGCTAATACTAAAAATACAAAAAGT
CCAAATTATCATCATTATCAAAATCATAATTACAATCCCAGTGGCAATTT
GGGCAGGGATGTTGGAGTTCATAGACTATCTTCAAACATTTAAGTAATAT
CACAATTCATAAATTCAAGATAAGCTAAAGAGCGATTCGAAACTTTTAAT
AAATAAATACGTAAATATACTACAGTAGACGTAGTACGCTTAGAAAAACT
GTTGAAACCTTTACACGATTAAAGAAATGAAAAGTACGTTCTGATAACCG
TCTGGAAAACGGGAAAAGGCGATGGAGAGAAAGGTCAGCTAGACCGCTGC
AGCTGTCACCATTGACAGGAAGTCGAAAGTTAGCGTCCCCCAAAAGCGGA
ACTCAAACTGACAGCAACAAACACACTCACCCGCCAGCCTCAAGGGCAGC
CGAAAAGAAAATCAAGGCATGACAGAAATAAAGGACAAATATCTATAGGA
AAATAAAAAAAAAAAAAAAAAA
MIP06948.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MB8.chr2L.pasa.11.a | 1178 | MB8.chr2L.pasa.11.a | 1..1109 | 1..1109 | 5545 | 100 | Plus |
MB8.chr2L.pasa.11.b | 1513 | MB8.chr2L.pasa.11.b | 1..1109 | 1..1109 | 5545 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 15809699..15810591 | 1104..212 | 4465 | 100 | Minus |
chr2L | 23010047 | chr2L | 15810647..15810860 | 214..1 | 1070 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:08:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15810975..15811872 | 1109..212 | 4490 | 100 | Minus |
2L | 23513712 | 2L | 15811928..15812141 | 214..1 | 1070 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15810975..15811872 | 1109..212 | 4490 | 100 | Minus |
2L | 23513712 | 2L | 15811928..15812141 | 214..1 | 1070 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 01:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 811..1004 | 719..910 | 145 | 56.3 | Plus |
looper1 | 1881 | looper1 LOOPER1_DM 1881bp | 1054..1140 | 542..626 | 124 | 65.2 | Plus |
MIP06948.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:04:43 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 15809699..15810590 | 213..1104 | 100 | <- | Minus |
chr2L | 15810649..15810860 | 1..212 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:39:55 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RA | 1..732 | 12..743 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:01:26 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RB | 1..732 | 12..743 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:21:23 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RB | 1..732 | 12..743 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:39:54 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RA | 1..1104 | 1..1104 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:01:26 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RB | 1..1104 | 1..1104 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:21:23 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42876-RB | 1..1104 | 1..1104 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:43 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15811930..15812141 | 1..212 | 100 | | Minus |
2L | 15810980..15811871 | 213..1104 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:43 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15811930..15812141 | 1..212 | 100 | | Minus |
2L | 15810980..15811871 | 213..1104 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:04:43 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15811930..15812141 | 1..212 | 100 | | Minus |
2L | 15810980..15811871 | 213..1104 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:01:26 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15811930..15812141 | 1..212 | 100 | | Minus |
arm_2L | 15810980..15811871 | 213..1104 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:14:06 Download gff for
MIP06948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15810980..15811871 | 213..1104 | 100 | <- | Minus |
2L | 15811930..15812141 | 1..212 | 100 | | Minus |
MIP06948.pep Sequence
Translation from 2 to 742
> MIP06948.pep
RVTMSVQWKIVIMSFFLFSTAHAGGYCGPNKIYACVPTLFCKDGRSTQRN
PAAHFNRQCFSFESCCDVNRVIYGMRYTGGDFEPGPYEQISEPFNNASGK
TSGTNSQQSTGNTGGTSPTLKKKGGVSSITNIQNTNNGGGKNFTTNSQMP
SYTMKSQPSNNAGGKTTTANNQAPSDSDGKTFTHSTNLHAHSYLNNNSGK
TNLGNPSTANTKNTKSPNYHHYQNHNYNPSGNLGRDVGVHRLSSNI*
MIP06948.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42876-PA | 243 | CG42876-PA | 1..243 | 4..246 | 1330 | 100 | Plus |
CG42876-PB | 243 | CG42876-PB | 1..243 | 4..246 | 1330 | 100 | Plus |
MIP06948.hyp Sequence
Translation from 2 to 742
> MIP06948.hyp
RVTMSVQWKIVIMSFFLFSTAHAGGYCGPNKIYACVPTLFCKDGRSTQRN
PAAHFNRQCFSFESCCDVNRVIYGMRYTGGDFEPGPYEQISEPFNNASGK
TSGTNSQQSTGNTGGTSPTLKKKGGVSSITNIQNTNNGGGKNFTTNSQMP
SYTMKSQPSNNAGGKTTTANNQAPSDSDGKTFTHSTNLHAHSYLNNNSGK
TNLGNPSTANTKNTKSPNYHHYQNHNYNPSGNLGRDVGVHRLSSNI*
MIP06948.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42876-PA | 243 | CG42876-PA | 1..243 | 4..246 | 1330 | 100 | Plus |
CG42876-PB | 243 | CG42876-PB | 1..243 | 4..246 | 1330 | 100 | Plus |