Clone MIP06976 Report

Search the DGRC for MIP06976

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:69
Well:76
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG43054-RA
Protein status:MIP06976.pep: gold
Sequenced Size:550

Clone Sequence Records

MIP06976.complete Sequence

550 bp assembled on 2011-03-11

GenBank Submission: BT126228.1

> MIP06976.complete
AAATCAAATTTATTTTTGTACTTCTAAAAATACTGAGACGAAATGAATTG
GTTCAATAATATATGCGAGGAAAGTCGCTTAAAGTTTTTTCCCAATCTTC
AAACAGTCAAAGCTAAGCGTAAATACGAAATTGGCCTGATGAGCGCAGAT
GAGTGCTATAGTTTCATAAAGAAAAACCTGAAGTCCAGAAATGTTGTAGA
AGAAGAAATGTTGTGGAAAGTCCCCATAATTCTTGTGTGTATCGGCTGCA
TAATAGTCATACTATTTGCATTTTGTTTCGCATTTCAGTGTGTGATAACA
AAGGTAAAGACCGCCAAAGTGCCAAAGCGTTTCGATTTCGACATTTGTGA
AGCTGAAAAACCAAAAGCCCAACCAATCCACAAGGCCAGCCAAATTGATC
ACCCAAAGAAAGGAACAAATTGCTGTACTTGTTTAAAATCAAATCTACTT
TGAAGTTGTGTTAACTGAATTTTCTATATATATGTATATAAAAATTATAA
TTATAATTATATATGAAGTCTAGTTATATGCAAAAAAAAAAAAAAAAAAA

MIP06976.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 17626513..17627043 1..531 2655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17627859..17628395 1..537 2670 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17627859..17628395 1..537 2670 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 22:20:43 has no hits.

MIP06976.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:21:28 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 17626513..17627043 1..531 92   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-11 12:43:44 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 1..411 43..453 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:55:11 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 1..411 43..453 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:27:29 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 1..411 43..453 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-11 12:43:44 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 1..531 1..531 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:55:11 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 1..531 1..531 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:29 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
CG43054-RA 1..531 1..531 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:28 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17627859..17628389 1..531 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:28 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17627859..17628389 1..531 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:28 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17627859..17628389 1..531 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:55:11 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17627859..17628389 1..531 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:10 Download gff for MIP06976.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17627859..17628389 1..531 100   Plus

MIP06976.hyp Sequence

Translation from 42 to 452

> MIP06976.hyp
MNWFNNICEESRLKFFPNLQTVKAKRKYEIGLMSADECYSFIKKNLKSRN
VVEEEMLWKVPIILVCIGCIIVILFAFCFAFQCVITKVKTAKVPKRFDFD
ICEAEKPKAQPIHKASQIDHPKKGTNCCTCLKSNLL*

MIP06976.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG43054-PA 136 CG43054-PA 1..136 1..136 733 100 Plus

MIP06976.pep Sequence

Translation from 42 to 452

> MIP06976.pep
MNWFNNICEESRLKFFPNLQTVKAKRKYEIGLMSADECYSFIKKNLKSRN
VVEEEMLWKVPIILVCIGCIIVILFAFCFAFQCVITKVKTAKVPKRFDFD
ICEAEKPKAQPIHKASQIDHPKKGTNCCTCLKSNLL*

MIP06976.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG43054-PA 136 CG43054-PA 1..136 1..136 733 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13254-PA 202 GL13254-PA 80..200 1..130 138 31.1 Plus