Clone MIP07173 Report

Search the DGRC for MIP07173

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:71
Well:73
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptObp56e-RB
Protein status:MIP07173.pep: gold
Sequenced Size:1259

Clone Sequence Records

MIP07173.complete Sequence

1259 bp assembled on 2009-03-11

GenBank Submission: BT072884.1

> MIP07173.complete
TTACGATCAGCATCATGAAAGTATTCTTTGTGTTTGCCGCCCTTGCAGCT
CTATCTTTGGCATCTGCCGGGCTAACTGATTCCCAAAAGGCTGAGGCAAA
GCAGAGAGCCAAGGCCTGCGTCAAACAGGAGGGAATCACGAAGGAGCAAG
CTATTGCCCTGCGGTCTGGAAACTTTGCAGACTCCGATCCAAAGGTAAAG
TGCTTCGCCAACTGCTTCCTGGAGCAGACCGGCCTGGTGGCCAATGGGCA
GATAAAACCTGACGTGGTTTTGGCCAAACTAGGTCCCATCGCCGGCGAAG
CCAATGTCAAGGAGGTGCAGGCCAAGTGTGACTCGACCAAGGGAGCCGAC
AAGTGCGACACTAGCTATCTGCTGTACAAGTGCTACTACGAAAACCACGC
CCAATTCTAAGAAAACCTTTTTTGATTTTCAAAAGAATATTTGTTTCTTT
GATTACCAGTTATTCTCAATAAAAATTAGATCAGGCTTCCCAAATAGGCG
TGCAATCAATTTAAGAAAAAGCTTGAAATTGTTAATAGGCGTGCACATAG
ACAGTCAGCAAAATCTATTTAAAGCGCATCTTCAGTATTGAATTTTAAAA
TCATAAAATGAACGGAACGCTTGCTCTAGTGTTAGCCTGCATTTTCGTTC
TGTCATATTCCAATGTAAGTGACTATTTATTATACTGCAACCATATTTAT
TTCTTGACATTGCCAGCCCGTACTGGAAAGTAATGAAAGTGAATTTCTTT
CTGGTCTTTCTATTAAGTACAAAGAGCTAAAAATACATTAAATGGTTTTG
TGACAGGTTAAATAACAAGTGGGTAACAGTCCCTGGAAACCGAAACCAAG
CGTTGATAATATGATTTTTTGAGTTTCGAGTTGAGGATAAAGTGTAAATA
GGCATGGCTAATGTACGAACTATAAAAGCCAGGAAAGATAGCTAATTTAT
GTTCTTGCACACAAAACTATCATTATGAAAGTATTCCTGTTGTTCATTTT
CATCTCTGCTATCTGGCTCCAAGCATTTTGTATGGTAAGCAATCGCAATA
ATGTTGAAATTCCATTCTTTGAAATGTCCAAGTTTTAGAAATCTTCTGAA
AAAATAAAAGCCTGCTTGAAACGGCAGCTGGGGTATACAATTACAGAAAA
TACAAAATTTGATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

MIP07173.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
nc_8077.a 1204 nc_8077.a 36..1204 1..1166 5775 99.7 Plus
Obp56e-RA 734 Obp56e-RA 159..734 1..573 2810 99.4 Plus
Obp56f-RA 636 Obp56f-RA 1..184 851..1034 920 100 Plus
Obp56f-RA 636 Obp56f-RA 184..265 1088..1169 410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15599716..15600816 69..1166 5320 99.1 Plus
chr2R 21145070 chr2R 15599589..15599657 1..69 345 100 Plus
chr2R 21145070 chr2R 15590492..15590777 411..126 245 72.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:08:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19712510..19713613 69..1169 5440 99.7 Plus
2R 25286936 2R 19712383..19712451 1..69 345 100 Plus
2R 25286936 2R 19703284..19703569 411..126 260 72.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19713709..19714812 69..1169 5450 99.7 Plus
2R 25260384 2R 19713582..19713650 1..69 345 100 Plus
2R 25260384 2R 19704483..19704576 411..318 200 80.8 Minus
Blast to na_te.dros performed on 2019-03-15 14:53:36 has no hits.

MIP07173.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:54:20 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15599589..15599656 1..68 100 -> Plus
chr2R 15599716..15600816 69..1166 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:52:30 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56e-RA 1..399 15..410 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:40:10 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56e-RA 1..399 15..410 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:48:54 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56e-RB 1..396 15..410 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:14:29 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56e-RB 1..396 15..410 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-11 13:15:38 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56e-RA 39..561 1..520 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:40:09 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56e-RA 39..556 1..515 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:48:54 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56e-RB 39..529 1..491 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:14:29 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56e-RB 39..529 1..491 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:20 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19712383..19712450 1..68 100 -> Plus
2R 19712510..19713610 69..1166 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:20 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19712383..19712450 1..68 100 -> Plus
2R 19712510..19713610 69..1166 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:54:20 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19712383..19712450 1..68 100 -> Plus
2R 19712510..19713610 69..1166 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:48:54 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15599888..15599955 1..68 100 -> Plus
arm_2R 15600015..15601115 69..1166 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:14:24 Download gff for MIP07173.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19713709..19714809 69..1166 99   Plus
2R 19713582..19713649 1..68 100 -> Plus

MIP07173.pep Sequence

Translation from 2 to 409

> MIP07173.pep
TISIMKVFFVFAALAALSLASAGLTDSQKAEAKQRAKACVKQEGITKEQA
IALRSGNFADSDPKVKCFANCFLEQTGLVANGQIKPDVVLAKLGPIAGEA
NVKEVQAKCDSTKGADKCDTSYLLYKCYYENHAQF*

MIP07173.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11735-PA 130 GF11735-PA 1..130 5..135 504 74 Plus
Dana\GF13167-PA 131 GF13167-PA 1..129 5..133 447 65.1 Plus
Dana\GF11734-PA 136 GF11734-PA 4..130 9..130 241 39.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21996-PA 132 GG21996-PA 1..132 5..135 520 84.1 Plus
Dere\GG20889-PA 131 GG20889-PA 1..130 5..134 430 60.8 Plus
Dere\GG21994-PA 139 GG21994-PA 1..128 5..128 230 39.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22760-PA 132 GH22760-PA 1..130 5..133 378 59.2 Plus
Dgri\GH23017-PA 132 GH23017-PA 3..128 8..132 260 40.5 Plus
Dgri\GH23015-PA 138 GH23015-PA 4..128 2..128 230 37 Plus
Dgri\GH23016-PA 135 GH23016-PA 1..125 5..127 191 32 Plus
Dgri\GH15401-PA 110 GH15401-PA 5..100 39..135 132 34.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56e-PB 131 CG8462-PB 1..131 5..135 671 100 Plus
Obp56e-PA 132 CG8462-PA 1..132 5..135 659 99.2 Plus
Obp56d-PB 131 CG11218-PB 1..129 5..133 448 64.3 Plus
Obp56d-PA 131 CG11218-PA 1..129 5..133 448 64.3 Plus
Obp56a-PA 139 CG11797-PA 1..128 5..128 234 36.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18537-PA 132 GI18537-PA 1..132 5..135 399 59.8 Plus
Dmoj\GI21083-PA 130 GI21083-PA 1..128 5..133 348 52.7 Plus
Dmoj\GI21082-PA 138 GI21082-PA 1..128 5..128 234 39.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11722-PA 131 GL11722-PA 1..131 5..135 472 64.9 Plus
Dper\GL10359-PA 130 GL10359-PA 1..130 5..135 458 69.5 Plus
Dper\GL10358-PA 137 GL10358-PA 1..134 5..134 238 38.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Obp56d-PA 131 GA10849-PA 1..131 5..135 472 64.9 Plus
Dpse\Obp56e-PA 130 GA21096-PA 1..130 5..135 461 70.2 Plus
Dpse\Obp56a-PA 137 GA11204-PA 1..134 5..134 237 38.8 Plus
Dpse\Obp69a-PA 149 GA10317-PA 9..139 8..135 146 26 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Obp56e-PA 119 GM23181-PA 1..119 5..135 485 84.1 Plus
Dsec\GM23170-PA 131 GM23170-PA 1..131 5..135 451 64.1 Plus
Dsec\GM21981-PA 139 GM21981-PA 1..128 5..128 226 38 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Obp56e-PA 132 GD11478-PA 1..132 5..135 639 94.7 Plus
Dsim\Obp56d-PA 131 GD15213-PA 1..131 5..135 455 64.9 Plus
Dsim\Obp56a-PA 139 GD11477-PA 1..128 5..128 231 38.8 Plus
Dsim\Obp56f-PA 125 GD11479-PA 1..119 5..128 147 32.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Obp56d-PA 132 GJ21407-PA 1..132 5..135 386 62.9 Plus
Dvir\Obp56eL1-PA 130 GJ20932-PA 1..128 5..133 333 48.1 Plus
Dvir\Obp56a-PA 138 GJ20931-PA 1..128 5..128 231 37.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15691-PA 132 GK15691-PA 1..132 5..135 459 66.7 Plus
Dwil\GK15692-PA 132 GK15692-PA 21..132 24..135 439 72.3 Plus
Dwil\GK15889-PA 139 GK15889-PA 1..130 5..130 247 41.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Obp56e-PA 132 GE12075-PA 1..132 5..135 570 84.8 Plus
Dyak\GE13830-PA 131 GE13830-PA 1..131 5..135 446 62.6 Plus
Dyak\GE12074-PA 139 GE12074-PA 1..128 5..128 233 38.8 Plus

MIP07173.hyp Sequence

Translation from 2 to 409

> MIP07173.hyp
TISIMKVFFVFAALAALSLASAGLTDSQKAEAKQRAKACVKQEGITKEQA
IALRSGNFADSDPKVKCFANCFLEQTGLVANGQIKPDVVLAKLGPIAGEA
NVKEVQAKCDSTKGADKCDTSYLLYKCYYENHAQF*

MIP07173.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56e-PB 131 CG8462-PB 1..131 5..135 671 100 Plus
Obp56e-PA 132 CG8462-PA 1..132 5..135 659 99.2 Plus
Obp56d-PB 131 CG11218-PB 1..129 5..133 448 64.3 Plus
Obp56d-PA 131 CG11218-PA 1..129 5..133 448 64.3 Plus
Obp56a-PA 139 CG11797-PA 1..128 5..128 234 36.7 Plus