Clone Sequence Records
MIP08035.complete Sequence
882 bp assembled on 2009-03-13
GenBank Submission: BT072901.1
> MIP08035.complete
AATGCTGGGGTAAAATGGTAGGAAAACATGCAAAGCTGGTATACAGAAGA
CAAACAATGTGAAATGTAGAAGGAGCTGAAACAGATTTTCCGACTGCAGT
AATAAATGATAAACAAGTGCAAGCTGGCCAAATGGGCGTGGCAGTGGGAA
TGTGAAGGTGTAGGGGCTTTTCCATTTCCCAGTTGCTAGGCTGATATTGA
AAACTGCTGCCTGCAAAGCTAAGCAAATGTTGCCCAGCGTCAATGTGTGT
GCGTGTGTGGGTGTGTGTGTCTTTTCACACTCTTGCATTATTTATGCAGG
CCACCATTCGTGCGTGAGTGTGTGTGTGTGTGTGTGAGCCATGTACGTGC
CTCGAACTGCAACGACAGCTGCTCCTGCCCCAGTTACCCGGAACCAGGAT
TCTGGATCCTGGATCCAGCGCCCAGTACCCAGGATTCAGAATCCAGAACC
CAGAACCCAGAATCCAGCCTCCACTTTGGGACCCTGTGTGCGCATATATA
TTTATTCCATGTACATATTCTTGCACGTCGCAAAAGAGCAGAGGTCCGGG
GAAAAGGACACGGGACGCAGGTCTGAGCACTCCGGACAAAGGGTGACTGC
TGCCGTTTATTGTCCTGCTCCTGCTTCTGCTCCGGCTCCTGCGAATGGCG
GAGCACTGGAGCTGTGGAGAAACGTGGCCGGGCAAGTGACCCAGAAAGTA
CCAGTAACCAGCAATAAATGGCAATATTTGATGGATTACTTGAGCGTTAC
TTTGACTTGCCAACGAAAAGAAGAGTATAATTTTATCGTGTTTGTGGGCG
GACGTTGAATGAATAAGTAATAGATTCAATTTTATTTTCTGTTGCTAATA
AACATAAATTATTTTAAAAAAAAAAAAAAAAA
MIP08035.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MB8.chrX.pasa.107.a | 846 | MB8.chrX.pasa.107.a | 1..846 | 1..846 | 4230 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| chrX | 22417052 | chrX | 20730167..20730670 | 1..519 | 2270 | 96.7 | Plus |
| chrX | 22417052 | chrX | 20730725..20731070 | 520..865 | 1730 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:09:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20864813..20865331 | 1..519 | 2595 | 100 | Plus |
| X | 23542271 | X | 20865386..20865733 | 520..867 | 1740 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23527363 | X | 20849905..20850423 | 1..519 | 2595 | 100 | Plus |
| X | 23527363 | X | 20850478..20850825 | 520..867 | 1740 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 15:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 1892..1945 | 810..864 | 119 | 70.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1122 | 641..598 | 112 | 72.7 | Minus |
MIP08035.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:41:42 Download gff for
MIP08035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| chrX | 20730725..20731070 | 520..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:16:15 Download gff for
MIP08035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43193-RA | 1..468 | 341..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:16:15 Download gff for
MIP08035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43193-RA | 1..865 | 1..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:41:42 Download gff for
MIP08035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20865386..20865731 | 520..865 | 100 | | Plus |
| X | 20864813..20865331 | 1..519 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:41:42 Download gff for
MIP08035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20865386..20865731 | 520..865 | 100 | | Plus |
| X | 20864813..20865331 | 1..519 | 100 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:41:42 Download gff for
MIP08035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20865386..20865731 | 520..865 | 100 | | Plus |
| X | 20864813..20865331 | 1..519 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:16:15 Download gff for
MIP08035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20735840..20736358 | 1..519 | 100 | -> | Plus |
| arm_X | 20736413..20736758 | 520..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:30:36 Download gff for
MIP08035.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20849905..20850423 | 1..519 | 100 | -> | Plus |
| X | 20850478..20850823 | 520..865 | 100 | | Plus |
MIP08035.pep Sequence
Translation from 340 to 807
> MIP08035.pep
MYVPRTATTAAPAPVTRNQDSGSWIQRPVPRIQNPEPRTQNPASTLGPCV
RIYIYSMYIFLHVAKEQRSGEKDTGRRSEHSGQRVTAAVYCPAPASAPAP
ANGGALELWRNVAGQVTQKVPVTSNKWQYLMDYLSVTLTCQRKEEYNFIV
FVGGR*
MIP08035.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dere\GG19700-PA | 211 | GG19700-PA | 92..210 | 2..124 | 426 | 73.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsec\GM23053-PA | 180 | GM23053-PA | 1..49 | 1..49 | 233 | 87.8 | Plus |
MIP08035.hyp Sequence
Translation from 340 to 807
> MIP08035.hyp
MYVPRTATTAAPAPVTRNQDSGSWIQRPVPRIQNPEPRTQNPASTLGPCV
RIYIYSMYIFLHVAKEQRSGEKDTGRRSEHSGQRVTAAVYCPAPASAPAP
ANGGALELWRNVAGQVTQKVPVTSNKWQYLMDYLSVTLTCQRKEEYNFIV
FVGGR*
Sequence MIP08035.hyp has no blast hits.
