Clone MIP08452 Report

Search the DGRC for MIP08452

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:84
Well:52
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG13255-RA
Protein status:MIP08452.pep: gold
Sequenced Size:1368

Clone Sequence Records

MIP08452.complete Sequence

1368 bp assembled on 2009-04-07

GenBank Submission: BT081999.1

> MIP08452.complete
ATTTATAGGACTATAAGGTGATACTTTAATATAAGCTCCAAGTTTAATTT
CTAACAATTGGATTTTCCTACTCCCATGGCACGCAACCTTAACTTGTGGG
GTTCGCGGGTCTTTGGGTCTTATCATTGTGACTGTGAAATTCGTTATCAG
TAGATAAAAAGCTTTTCAGGCCGAGTCGATAGCCTGGCTATCATGCCTAA
TTGCCGAAATCACTACCCCCACCAGATCTCGCCACCTCCACGAGACGAGG
GACCCCAAGCATTTGTTTGACGCCATTTCATTCTTTATTGACGCGGCCAA
TTAAGAAGGCAGCGTTGTTGATTTGATTGCGAGGCGAATATGAATGCGAC
TGGAATTCCTCCATGAGTTCTAAATAAAGCTGGAGTCCGAAAAGTTGCCA
GATGTAAAGAGCGGCGGCTCTCAGTCGCTGGGAACTCCAAGAAGTGGAGG
CGATTTTCTAATCTTGGCCCAAGTTACAGACTCTATTGCACAAGGGGCTT
ATCAGAACCAAGCCAAAAACTTAAAACTGGACGCACAACATACAGCAAGA
TCTACAGCGGCAACAGTCTGGCAACGAAGCGTATACGTAATGCCAAGCAA
AGTTCCATCCATTTAACGCTCTCGGCTCGTTTCAGTTCTCGGGCAGGTGT
CAAGCGACGTACACACGAAACGCCGACGCGGTCACAATTCCAGAATATCA
TATACATGCTATATATGTGTATGCTCAAGTGGCTAATTTACATACGCGTT
GCGACCCGTCTATTTACCTGAACCTGAGCTGTCTGGACTACACTCTTTAA
CATTTCCTTACGGAAAGCGAGTGTACAAAGTCACAACAAATTTTCAAGAC
ATATTCTCGGTATATATATATTTCTGTATTCAAACATATCGCCATGCTGG
ACCCCATTTCGGACGCACCGCTGGTCTTGGCCTACGTCTTTATGTCGCTG
CTGGTGCTCATTGTGTGCTTCATACTGGTCAATGTGGTCCACAAGCTGTA
TCGCAGTCTCAACGGCGAGGTATCAACGGGGCTGGTTTCTCCGGCACAGC
AGCTGAAGACCTCCATCATGGAGCTAGACGCCATGAAGACCGGTTAGGAT
GGGTGCAGCGCAGCTGGCTATGAGAGGCGCGAGAATCTCAAGTCTCAGTC
TCCGATGTCAGAGCTCCGGTTTTAATTCGGGCGATTGGAGCGATGTACGA
CGAACGACAGCTGCTGACCACCCACACGCACGAACCACACAACCTAGACG
CCTGTTGATATGTTAAGCTATGCAACTAGACTAGACGTAAATAAATACAC
GAAACTAGGCTTACGAGTAGAAATTAACTACATTAAACGCGCTGGTCCTC
TAAAAAAAAAAAAAAAAA

MIP08452.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13255-RA 930 CG13255-RA 1..930 412..1341 4650 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20826509..20827860 1..1351 6710 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:09:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20837488..20838840 1..1352 6715 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20830588..20831940 1..1352 6725 99.9 Plus
Blast to na_te.dros performed on 2019-03-15 17:15:03 has no hits.

MIP08452.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:15:43 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20826509..20827860 1..1351 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:08:51 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
CG13255-RA 1..204 894..1097 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:44:07 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
CG13255-RA 1..204 894..1097 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:29:40 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
CG13255-RA 1..204 894..1097 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:30:30 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
CG13255-RA 1..204 894..1097 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-07 11:49:15 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
CG13255-RA 1..930 412..1341 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:44:07 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
CG13255-RA 1..930 412..1341 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:29:40 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
CG13255-RB 1..1352 1..1351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:30:30 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
CG13255-RB 1..1352 1..1351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:43 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20837488..20838839 1..1351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:43 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20837488..20838839 1..1351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:15:43 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20837488..20838839 1..1351 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:29:40 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20830588..20831939 1..1351 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:19:11 Download gff for MIP08452.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20830588..20831939 1..1351 99   Plus

MIP08452.pep Sequence

Translation from 893 to 1096

> MIP08452.pep
MLDPISDAPLVLAYVFMSLLVLIVCFILVNVVHKLYRSLNGEVSTGLVSP
AQQLKTSIMELDAMKTG*

MIP08452.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24288-PA 81 GF24288-PA 1..81 1..67 238 63 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16145-PA 67 GG16145-PA 1..67 1..67 330 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15911-PA 68 GH15911-PA 1..68 1..67 197 63.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13255-PB 67 CG13255-PB 1..67 1..67 327 100 Plus
CG13255-PA 67 CG13255-PA 1..67 1..67 327 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16565-PA 65 GI16565-PA 1..65 1..67 214 70.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24374-PA 67 GL24374-PA 1..67 1..67 227 70.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12156-PA 67 GA12156-PA 1..67 1..67 227 70.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22328-PA 67 GM22328-PA 1..67 1..67 327 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14916-PA 67 GD14916-PA 1..67 1..67 327 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12816-PA 65 GJ12816-PA 1..65 1..67 232 70.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19128-PA 68 GK19128-PA 1..68 1..67 248 76.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19715-PA 67 GE19715-PA 1..67 1..67 325 95.5 Plus

MIP08452.hyp Sequence

Translation from 893 to 1096

> MIP08452.hyp
MLDPISDAPLVLAYVFMSLLVLIVCFILVNVVHKLYRSLNGEVSTGLVSP
AQQLKTSIMELDAMKTG*

MIP08452.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13255-PB 67 CG13255-PB 1..67 1..67 327 100 Plus
CG13255-PA 67 CG13255-PA 1..67 1..67 327 100 Plus