Clone MIP08606 Report

Search the DGRC for MIP08606

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:86
Well:6
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG6490-RB
Protein status:MIP08606.pep: gold
Sequenced Size:6211

Clone Sequence Records

MIP08606.complete Sequence

6211 bp assembled on 2009-06-11

GenBank Submission: BT088806.1

> MIP08606.complete
GCGAACAGTTTGGACGTGTTTGCTGCGTCGCTCTGTGTAATTGCGGGCGG
ATTTCTCTAGTAAATTTTTGCCGGCGCTTGTAAATTCGCGATATTTTCGA
CGACGCTGCGTGCTTGTGTGTGTTTCAAACAACAAACAAAAGTTAAACAA
GCTGGGCAACAACAGTAATTGCAGCTATGTGTGCGTCTGTGTTTGCGTGT
GTTTGAGTGCCCAAACATCGCGGTGAACAGAGAAATGAGAAAATGCTCTT
GCTAATCGTATTGACTGGAAGAGCGTGAAGAGCTCGCTAACGTTCCAATA
ATCGCAAAAAGATAAAAAAAAAATCTATATAGTTATAATTACAATCGCGG
TTGGGCCTAAAAAAGGAGCCCCAGCCGGAAAGCGGTGACAACAAAAAAGT
CGGATTGCAATGTGTTTGTTTTACAATCGTCGCCTCTTTGTGATTCAATT
GATTGAGATCCTACTGCTGCTGCTAACCGACCACAATGGACGACTGACAC
TAACCAAGGAGTCGACAACAGTTGCTGCCGCCGTCGCCCAACCGAAGAAC
TCAACAGCACTCCAGCCATATCTGCAGATCCAGAAGCACGCCGTCACAAG
ACTGACCATCAGCAAGCCCCACTCCCCGTACTATTTGCCATGCATACCCA
TCCTAACGCCCTACAATCACGATCAGGACAACCAGCCCATCTACTGCAGT
TGGTATCGAAATGACGTGGTTGTCGAACAAGTATCATATCGCAAAAATGA
CTTCTTTATCTATGACAATGGTACGCTGCGTCTGCCCACCAATGAAAAGG
CAAGCGGCGAATATTACTGCAAGATCGAGTGGGATGAGTCAGCGGTGATA
TCCGACAGAATCACAGTCGAGTATCCTGTGCTCAAGCGTTTATTTCCTGG
CCAACAGCAAGCGGCCAATATCAGTGCGTTGGAAAACAAACCGCTCGTGC
TGAGCTGCCCCTTTCTGAGTGTTCCAGCTGCGCGTTTTAGCTGGTACTTT
GGCAACGATTCCCTGACCAATGACAACAGTGCTCTCATCCTGACCAATGG
CACCTTAATATTGAGGCATTTGCGTCTCGAACAGGCGGGTAAATATAAGT
GCGTGGCGCAGAACACATTTGCCAGCAAGACGCACCGCCAGTTCATTTGG
CAACTGCAAGTGGAGCCGAAGGATGCTACATTTTATCCCAAAAACGAGGC
GGGAATTACGGAGACAGCCGTTTCGGAGGCCCAACTACTGCCGGCGTTTC
AGAATGCAACGGTTTTTGTGCCCGCCGGCGGATCCGTGCTGCTACAATGC
CACGCGGTGGCAGACTTTGTGCCAATTGTGTGGTACCTCCAGCCGCCAAA
CAACAAGATGGTTCGCCTGAGCAACAATAGTGTAGCCTATTCCATCACGA
ATGCTAGCATAGCCCGGCATGAAGGACGCTACAGTTGTATAACCCCACTG
GAAACGCAAAACTTTCAGGTGATTGTGACAACACCTCCGAGGATTGTGAG
TCGCCTGCCCGTCGAGGTGGTGTATATTGGTCTCTCGCGAACACTAACCT
GCCGGGCAGAGGGGCATCCGGAACCGAGTATTACCTGGTACCACAACGGC
GTCCATCTGAACAGCTCATATACACGCTACATTAGCGGGAATGAGTTGCA
CGTCCATTCGTTTGACTCCAAGGAGGAGGGCATCTACCAGTGTGTGGCCA
GAAATGTTGCTGGTGAGGATTCGGCGACGGGTGAGCTGCGATTCAACCGA
CAGCTCGAGGAGGTCAACCCACTGCAGAACATACGCTGCTATCCGCACAG
CTTCCATTCGATCAACATCACATTTGACAGCCGCACCCTAACGTCAATGT
TCGTGGTGTATATTGTGAGGAACAATCCCCACAGTTGGACCTCGTTTTCG
CCCATGAAGCTGAATCAGACATCCTACGTGGTGATATCCACTGATTTGCC
CGTTTACGAGCCCTTTGCCTTGATCACCCGAGTATTATTTCCCACTACAG
AGGTAAGGACAGGAACCTTGGTTCCCCAGCAAATGATTCTCAGCTCGTTA
AGAAGTACACCAGTCACGTGCTGCACCCAAGGATTAATGCTTCGACCCAT
TGCCGTGGGCAATGACACGTTTGTTAAGTGGTCGCAGGGTCAGTTGGAGA
ACAAGAAGTACTTTATCCTGCAGTTCTCGATCAACCACACCCATCCGCAT
CCTGCGCAACTCTTAAATGGATCTCTACAAGGCACCCTGACTTCTGTTGA
GGAAAAAGCTGACCAGGTGCGACACCATCTGACCGAAATCCAGCCTCTTA
ATCAATCTGCGGCAGCCACAGTGCTGAGAAATGTGGAGCACGAGGACAAC
GTTGTCGACGACACTCTAGAACTGGAGGATGACATCTTTAGTCTAGTGGT
AGATGCCAGTGTAACCGGAATCTTGTTGCAGCGATTCACGCGCATCAAAA
TGAGAGTGTTGATCATCACCACCGAGAATGAGTTCCTGGGCCAGGACTTT
CGCTATGTTCAGTGGAAGATTATCGAGAATGGCACTTCGGAGCAGTCAAA
TATGCCCTTTCGTCTGGTCACCCGTGAGTCTCGGGCTTTGGCCTTTAAGT
TTCTGGATAGCCTCAATGAGACTTGCGTGCTGGAGTGCCACACGGAGATA
CAAGCACAAATGTCATTACCCAGTCAGGATCCAAAGTGTCAGGATCGAAA
TATTGCCAACTCGTTGCTGTTGGTCACAGGTCTTAAGCCAGACACTCGGT
ACAATCTGCATTTCTACAACTGCAAGACGCGTATTTTCTATGGCGACATA
GATGAGAAGACCGAGCAGGATCCTCCTGGTACCATCAGCAATTCAAAGTT
GATTAAACAAAATGGCCTGAAATTGATGTGGGAGCCACCGATTAATCCCA
ATGGTCGTGTTCATCACTATGATATCCGGTGGTCGTTGGACAATGTAACG
CACGAAGCTATTGTTAAAGAGTGCACAAAATGCTCATATAAGTTTCCAAA
TGTCTCTGAGACGGCGAAAATCCATGTGGCAGTTCGCGTAATGGGCGATA
CTGGAGCAGGAGCTCCCATGTACTTCGACATGATAAATAATAACCACACA
TGGCTGAAGGAGGAAAGCGAATCATCGCATTCGGAGGTTTACAGTGGGAT
TGCCATAGGCTCTTTGCTGTCAATAGCATGTGTCTTTCTCTTCGGGCTGT
TTATAATTTTCCAGCAGCGCAACTTCAAGGCCCGCGCCCAGGGACCCACC
CACCTGACCACACCGACTGATATTAATTTCGGTAATCTGAGCAGTGCCTC
CGGGATGCCGGGAGATAGTGCCGGCGGTCTGAGTGGTGGAACATTGCAGC
AGGATTGCCATGAGATGCAAACTCTCATTCCGCGTTCACGGTACCACATT
GAATTGCTACCGGAGCACAGTTTGGAATACCAGACCAGCACGGCGGCCGT
GGCAGTTGTTCATCTGGCCAACGGCAATGGGAGTGTCCAGGTGGCGAGGC
GATCGGATCAAGATGGAGCAGCTCAGGGGGACTTGGGCATAGCCGGAGTG
CACAACCTATCGCAGTTGCCGCTGTGCGGAGTTGGAGGTACATCGCCGGA
GCGAAAGACCGTGCAGGATGCCATGTTGCAGGAAGCGAAAGCATTCTATA
TACCCTATAGGCATACGCCACCCAACGCGGTGGCTTTGAGCAGCTCCAAA
CAGTGTGCGGTGCCCAGTGGCTCCGAACTGGAGGTGATTGTACCGCCAAA
CTCGCTGCCATTGGTCACCACTATGCCTGGACTGGGTGTGGTCGGCGGCG
GCGGCAGCGGAGGTGGAGGTGTAGGTGGCTCCAGTCGAAGGAGTGGGAGC
CTGAGCAGCAGCAGTGCCAGCAGCAGCAGCAACGGCAGCAGTAAAAAACA
GTTTCACACCAACTTCGTGCGCCACTCAAATTCAAATGATGGGATTTACC
TGCTGGCCGAGGAGGAGGCGGCTGCCACCTTAACACCCACCTCGGAACGC
GAATATGCGGCTGTATGCCTCACCAATGGTTTCAAACTGCCCGCCGATGT
GGCCAAATCGGGGGGCGGCACGTATAACACCACCAACAATAACAATAGCA
GCACTAACACTAGCCAGAAATCAGCAACTGCCAAGGAGCGTCAGCCGCGA
GGCAATGGCAATCCGATCTCGTTCAGCCACAATGCATGCAAAGTTCCTGC
CAACGGACCGGCGTCCGTTAACGTAAACCATTCGTCGGCGGTCAAGCAAT
CTTGGCCAGCGGCGACAGTGGTCCATCGACGAGCCCAGGTGGATCCCAAT
GGGTGAAGCAAGCAGTATTTTTATGAAGCTACAACATAGAAGCAAGCAAA
ACAAAATAAAACAAGAGAAATAGAAAGGAGATGGGCGAAAAGTTATATAG
GAGAGAAAACCACATTCACAGCTCGAAACATTCCAAAAGAGTAGTGATTA
CGCAGATAATGATGATAATTAGATCACTACGATGATTAGCATTTATAAAG
AGTACATTTTATAAATGTAAATATTTAGTAACTGAAACTATGGAACTATG
GGAGAAATGATTAATTAAGCTAATATTTATACACATGTATCTACATATGT
ACACTCGTATACAGAACACGTACGCTAAGTTGTATGCTATACTTTTGTCG
CGATTCAACGTTTTTACCGTACTTTTGTATTTGTATTTGTTTAGTTTTTG
TTTGTTTTTTTCGTTAATTGAGGCTCATTTTTACATGTAACTTTTTCTTA
CACATAAACATAATTTATTGTTGCTTTCGATGCAAACACAAACATAGCAC
ATGCACACCGAAATACATAAGTACATATATACATAGCAATAGACCGCGCA
GCCCGCAAGTATGCATTACAATATTTGTCGCTGATAATTACTACGTTTAA
CAATTGCTTCGTAATTGCCGCAAAAAATTCAATTACACTCAAATAGAATA
AATATACGCAAACAGAACAGCCAAAAAACCACAAATACTGCAATAGCCCA
CACTCAACCAACATACTATCCAACCACTCAAATGCCACTCAACCACAATA
GTCACAAGTGTTCACATCGATTCCGATTTAAAACGTAATCTATTCAATAA
TATTTGTAATTTTATTTTATTTATATTTGTAGTCCTTTTTTAAGCGAAAT
GTTTAATGCTTAATTTCCGCATATTTACTGCTGCATTTTGTTTTGTTTAC
ACAACCGATATATCAAATGTACCTGATTATATTCATTTTGCATTTTTGTT
TTTGTGCTCTCTCTCGGTCTCACCACACACACACACACACACACACTTTC
CCTTTGAAAGAGGAACAATTCCAATTTGTGCACACATCCACATTGCATAA
CTCTATAATAAGCCACATAATCCATCGCATTGCTGCCGAATATTATAAAT
TCACCAACCGTACCTCGACATCAAAGCTACGCCAAACGAGAAACGACACA
AACCGAGCTGCTGCTGCTGCCCTTCCACTGATATTATTTTAGATAGGAAT
TGGAAAGTAGTTGAATCAGTAGCCAACACAACGAACTGTGAACTGTTGTT
CTGTGTGAAACGAGATGCGAAAATTGTTACGAGATTCAGAGACAGAAACA
CAACCATGCACACACTTACCCCCCAAAAAAAAAACCTAACCATAGAATAT
ACATTCCACTGGCGTATGCAAGTCGCAGATACATTGTACACACACACATA
TGACACCAATTGGAGATACGTTTTTAAATGACTAAAACGAGTACGAGAAA
ATAGATAAAATACATATATTCAATGTGAACGAAGTGTGTTTGAAAACTGT
AACTGTAACTGTATACGTATTTAGAGTCTAAGTGCAATACCAACAAATAA
TTAAATAGCAAAAGGTAACCTTTAAGATCCCTGAGGCAGAACAAAACCAA
CAACTATAAACAATAGTACCTTTCCACTCAACCAGAAGCAATGTTCAAAG
TAGACTCACCTCGAACCCAGTTAGTTGCGACTTAGACCATCCGTAAATAA
ACAATCTGATTTGTGTTCAAGCGGAATAAAGTCGCAGACTTTGAACTTTC
GAACTTCACCGAAAGGAGTTACCAGTTTGTATAGCCGAATAATTTTACAA
TTAACAAAACCAATGTGCATGCAAAACACAAAAGCCACAAAATGAACTTT
AACCTACGAAAAGCATTTAAATAAATACACACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

MIP08606.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6490.a 7201 CG6490.a 1..6185 1..6186 30890 99.9 Plus
CG6490-RB 6181 CG6490-RB 1..6181 1..6182 30870 99.9 Plus
CG6490.b 7485 CG6490.b 495..6469 211..6186 29840 99.9 Plus
CG6490.b 7485 CG6490.b 1..210 1..210 1050 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22294149..22297339 6182..2991 15715 99.6 Minus
chr3R 27901430 chr3R 22298518..22299503 2084..1099 4825 99.3 Minus
chr3R 27901430 chr3R 22298018..22298454 2521..2085 2140 99.3 Minus
chr3R 27901430 chr3R 22355191..22355500 521..211 1505 99.7 Minus
chr3R 27901430 chr3R 22297619..22297919 2822..2522 1475 99.3 Minus
chr3R 27901430 chr3R 22358086..22358295 210..1 1050 100 Minus
chr3R 27901430 chr3R 22300433..22300634 878..677 965 98.5 Minus
chr3R 27901430 chr3R 22297393..22297562 2992..2823 820 98.8 Minus
chr3R 27901430 chr3R 22300693..22300851 677..519 795 100 Minus
chr3R 27901430 chr3R 22300201..22300352 1029..878 715 98 Minus
chr3R 27901430 chr3R 22299971..22300045 1101..1027 375 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:10:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26471099..26474294 6186..2991 15980 100 Minus
3R 32079331 3R 26475473..26476458 2084..1099 4930 100 Minus
3R 32079331 3R 26474973..26475409 2521..2085 2185 100 Minus
3R 32079331 3R 26474574..26474874 2822..2522 1505 100 Minus
3R 32079331 3R 26532113..26532422 521..211 1505 99.7 Minus
3R 32079331 3R 26535008..26535217 210..1 1050 100 Minus
3R 32079331 3R 26477382..26477583 878..677 1010 100 Minus
3R 32079331 3R 26474348..26474517 2992..2823 850 100 Minus
3R 32079331 3R 26477649..26477807 677..519 795 100 Minus
3R 32079331 3R 26477150..26477301 1029..878 760 100 Minus
3R 32079331 3R 26476920..26476994 1101..1027 375 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26211930..26215125 6186..2991 15980 100 Minus
3R 31820162 3R 26216304..26217289 2084..1099 4930 100 Minus
3R 31820162 3R 26215804..26216240 2521..2085 2185 100 Minus
3R 31820162 3R 26272944..26273253 521..211 1515 99.6 Minus
3R 31820162 3R 26215405..26215705 2822..2522 1505 100 Minus
3R 31820162 3R 26275839..26276048 210..1 1050 100 Minus
3R 31820162 3R 26218213..26218414 878..677 1010 100 Minus
3R 31820162 3R 26215179..26215348 2992..2823 850 100 Minus
3R 31820162 3R 26218480..26218638 677..519 795 100 Minus
3R 31820162 3R 26217981..26218132 1029..878 760 100 Minus
3R 31820162 3R 26217751..26217825 1101..1027 375 100 Minus
Blast to na_te.dros performed 2019-03-15 17:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6712..6964 4924..5188 166 57.7 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 620..798 3891..3719 161 58.8 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6726..6933 4924..5138 146 57.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6740..6958 4924..5152 137 57.9 Plus
looper1 1881 looper1 LOOPER1_DM 1881bp 139..309 5690..5869 131 57.7 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6754..7061 4924..5235 127 53.1 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 746..839 4749..4844 123 67 Plus

MIP08606.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:17:19 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22300693..22300848 522..677 100 <- Minus
chr3R 22355191..22355500 211..521 99 <- Minus
chr3R 22358086..22358295 1..210 100   Minus
chr3R 22294149..22297337 2993..6182 99 <- Minus
chr3R 22297393..22297562 2823..2992 98 <- Minus
chr3R 22297619..22297919 2522..2822 99 <- Minus
chr3R 22298018..22298454 2085..2521 99 <- Minus
chr3R 22298518..22299503 1099..2084 99 <- Minus
chr3R 22299974..22300042 1030..1098 100 <- Minus
chr3R 22300201..22300351 879..1029 98 <- Minus
chr3R 22300433..22300633 678..878 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:00:03 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6490-RA 65..576 522..1031 99 -> Plus
CG6490-RA 641..3915 1032..4306 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:47:39 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6490-RD 1..3897 410..4306 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:30:25 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6490-RB 1..3897 410..4306 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:31:34 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
plum-RB 1..3897 410..4306 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:02 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6490-RA 65..576 522..1031 99 -> Plus
CG6490-RA 641..5791 1032..6182 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:47:39 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6490-RB 1..6181 1..6182 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:30:25 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6490-RB 1..6181 1..6182 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:31:34 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
plum-RB 1..6181 1..6182 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:19 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26471103..26474292 2993..6182 100 <- Minus
3R 26474348..26474517 2823..2992 100 <- Minus
3R 26474574..26474874 2522..2822 100 <- Minus
3R 26474973..26475409 2085..2521 100 <- Minus
3R 26475473..26476458 1099..2084 100 <- Minus
3R 26476923..26476991 1030..1098 100 <- Minus
3R 26477150..26477300 879..1029 100 <- Minus
3R 26477382..26477582 678..878 100 <- Minus
3R 26477649..26477804 522..677 100 <- Minus
3R 26532113..26532422 211..521 99 <- Minus
3R 26535008..26535217 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:19 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26471103..26474292 2993..6182 100 <- Minus
3R 26474348..26474517 2823..2992 100 <- Minus
3R 26474574..26474874 2522..2822 100 <- Minus
3R 26474973..26475409 2085..2521 100 <- Minus
3R 26475473..26476458 1099..2084 100 <- Minus
3R 26476923..26476991 1030..1098 100 <- Minus
3R 26477150..26477300 879..1029 100 <- Minus
3R 26477382..26477582 678..878 100 <- Minus
3R 26477649..26477804 522..677 100 <- Minus
3R 26532113..26532422 211..521 99 <- Minus
3R 26535008..26535217 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:17:19 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26471103..26474292 2993..6182 100 <- Minus
3R 26474348..26474517 2823..2992 100 <- Minus
3R 26474574..26474874 2522..2822 100 <- Minus
3R 26474973..26475409 2085..2521 100 <- Minus
3R 26475473..26476458 1099..2084 100 <- Minus
3R 26476923..26476991 1030..1098 100 <- Minus
3R 26477150..26477300 879..1029 100 <- Minus
3R 26477382..26477582 678..878 100 <- Minus
3R 26477649..26477804 522..677 100 <- Minus
3R 26532113..26532422 211..521 99 <- Minus
3R 26535008..26535217 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:30:25 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22300070..22300239 2823..2992 100 <- Minus
arm_3R 22296825..22300014 2993..6182 100 <- Minus
arm_3R 22357835..22358144 211..521 99 <- Minus
arm_3R 22360730..22360939 1..210 100   Minus
arm_3R 22300296..22300596 2522..2822 100 <- Minus
arm_3R 22300695..22301131 2085..2521 100 <- Minus
arm_3R 22301195..22302180 1099..2084 100 <- Minus
arm_3R 22302645..22302713 1030..1098 100 <- Minus
arm_3R 22302872..22303022 879..1029 100 <- Minus
arm_3R 22303104..22303304 678..878 100 <- Minus
arm_3R 22303371..22303526 522..677 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:23:08 Download gff for MIP08606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26211934..26215123 2993..6182 100 <- Minus
3R 26215179..26215348 2823..2992 100 <- Minus
3R 26215405..26215705 2522..2822 100 <- Minus
3R 26215804..26216240 2085..2521 100 <- Minus
3R 26216304..26217289 1099..2084 100 <- Minus
3R 26217754..26217822 1030..1098 100 <- Minus
3R 26217981..26218131 879..1029 100 <- Minus
3R 26218213..26218413 678..878 100 <- Minus
3R 26218480..26218635 522..677 100 <- Minus
3R 26272944..26273253 211..521 99 <- Minus
3R 26275839..26276048 1..210 100   Minus

MIP08606.pep Sequence

Translation from 409 to 4305

> MIP08606.pep
MCLFYNRRLFVIQLIEILLLLLTDHNGRLTLTKESTTVAAAVAQPKNSTA
LQPYLQIQKHAVTRLTISKPHSPYYLPCIPILTPYNHDQDNQPIYCSWYR
NDVVVEQVSYRKNDFFIYDNGTLRLPTNEKASGEYYCKIEWDESAVISDR
ITVEYPVLKRLFPGQQQAANISALENKPLVLSCPFLSVPAARFSWYFGND
SLTNDNSALILTNGTLILRHLRLEQAGKYKCVAQNTFASKTHRQFIWQLQ
VEPKDATFYPKNEAGITETAVSEAQLLPAFQNATVFVPAGGSVLLQCHAV
ADFVPIVWYLQPPNNKMVRLSNNSVAYSITNASIARHEGRYSCITPLETQ
NFQVIVTTPPRIVSRLPVEVVYIGLSRTLTCRAEGHPEPSITWYHNGVHL
NSSYTRYISGNELHVHSFDSKEEGIYQCVARNVAGEDSATGELRFNRQLE
EVNPLQNIRCYPHSFHSINITFDSRTLTSMFVVYIVRNNPHSWTSFSPMK
LNQTSYVVISTDLPVYEPFALITRVLFPTTEVRTGTLVPQQMILSSLRST
PVTCCTQGLMLRPIAVGNDTFVKWSQGQLENKKYFILQFSINHTHPHPAQ
LLNGSLQGTLTSVEEKADQVRHHLTEIQPLNQSAAATVLRNVEHEDNVVD
DTLELEDDIFSLVVDASVTGILLQRFTRIKMRVLIITTENEFLGQDFRYV
QWKIIENGTSEQSNMPFRLVTRESRALAFKFLDSLNETCVLECHTEIQAQ
MSLPSQDPKCQDRNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGDIDEK
TEQDPPGTISNSKLIKQNGLKLMWEPPINPNGRVHHYDIRWSLDNVTHEA
IVKECTKCSYKFPNVSETAKIHVAVRVMGDTGAGAPMYFDMINNNHTWLK
EESESSHSEVYSGIAIGSLLSIACVFLFGLFIIFQQRNFKARAQGPTHLT
TPTDINFGNLSSASGMPGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIELL
PEHSLEYQTSTAAVAVVHLANGNGSVQVARRSDQDGAAQGDLGIAGVHNL
SQLPLCGVGGTSPERKTVQDAMLQEAKAFYIPYRHTPPNAVALSSSKQCA
VPSGSELEVIVPPNSLPLVTTMPGLGVVGGGGSGGGGVGGSSRRSGSLSS
SSASSSSNGSSKKQFHTNFVRHSNSNDGIYLLAEEEAAATLTPTSEREYA
AVCLTNGFKLPADVAKSGGGTYNTTNNNNSSTNTSQKSATAKERQPRGNG
NPISFSHNACKVPANGPASVNVNHSSAVKQSWPAATVVHRRAQVDPNG*

MIP08606.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18881-PA 1320 GF18881-PA 22..1320 40..1298 5216 78.4 Plus
Dana\GF14467-PA 880 GF14467-PA 175..425 184..439 197 29.7 Plus
Dana\GF25109-PA 1617 GF25109-PA 353..602 129..393 179 24.2 Plus
Dana\GF15179-PA 1335 GF15179-PA 90..339 129..393 170 24 Plus
Dana\GF18608-PA 2078 GF18608-PA 63..456 93..460 168 24.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12185-PA 1315 GG12185-PA 22..1315 38..1298 6632 95.4 Plus
Dere\GG14294-PA 1774 GG14294-PA 353..602 129..393 176 24.1 Plus
Dere\GG23567-PA 879 GG23567-PA 112..438 123..451 174 28.4 Plus
Dere\GG24785-PA 1362 GG24785-PA 113..362 129..393 167 23.7 Plus
Dere\GG16771-PA 2053 GG16771-PA 89..460 117..460 166 23.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17447-PA 1283 GH17447-PA 4..1283 33..1298 4174 63 Plus
Dgri\GH12751-PA 1292 GH12751-PA 167..489 123..456 227 27.2 Plus
Dgri\GH11362-PA 888 GH11362-PA 88..414 119..446 197 28.4 Plus
Dgri\GH15500-PA 1725 GH15500-PA 353..602 129..393 180 24.1 Plus
Dgri\GH11407-PA 1419 GH11407-PA 90..339 129..393 168 23.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
plum-PD 1298 CG6490-PD 1..1298 1..1298 6799 100 Plus
plum-PC 1298 CG6490-PC 1..1298 1..1298 6799 100 Plus
plum-PB 1298 CG6490-PB 1..1298 1..1298 6799 100 Plus
plum-PE 1298 CG6490-PE 1..1298 1..1298 6799 100 Plus
ihog-PA 886 CG9211-PA 118..444 123..451 198 27.3 Plus
Dscam1-PAH 2016 CG17800-PAH 528..797 163..435 187 24.6 Plus
Dscam1-PBO 2019 CG17800-PBO 531..800 163..435 187 24.6 Plus
Dscam1-PAL 2016 CG17800-PAL 528..797 163..435 179 23.5 Plus
Dscam1-PBU 2034 CG17800-PBU 531..800 163..435 179 24.6 Plus
Dscam1-PAY 2018 CG17800-PAY 530..799 163..435 175 23.5 Plus
Dscam1-PAP 2022 CG17800-PAP 534..803 163..435 175 23.5 Plus
Dscam4-PH 1874 CG42330-PH 491..740 129..393 173 24.5 Plus
Dscam4-PE 1918 CG42330-PE 491..740 129..393 173 24.5 Plus
Dscam4-PD 1918 CG42330-PD 491..740 129..393 173 24.5 Plus
Dscam4-PJ 1935 CG42330-PJ 491..740 129..393 173 24.5 Plus
Dscam4-PI 1935 CG42330-PI 491..740 129..393 173 24.5 Plus
trol-PAX 2853 CG33950-PAX 2116..2450 97..441 172 22.6 Plus
trol-PAG 3105 CG33950-PAG 2368..2702 97..441 172 22.6 Plus
trol-PAL 3728 CG33950-PAL 2089..2423 97..441 172 22.6 Plus
trol-PAS 3805 CG33950-PAS 2166..2500 97..441 172 22.6 Plus
trol-PAP 3806 CG33950-PAP 2167..2501 97..441 172 22.6 Plus
trol-PAY 3833 CG33950-PAY 2194..2528 97..441 172 22.6 Plus
trol-PAO 3887 CG33950-PAO 2248..2582 97..441 172 22.6 Plus
trol-PAI 3897 CG33950-PAI 2119..2453 97..441 172 22.6 Plus
trol-PAM 3967 CG33950-PAM 2328..2662 97..441 172 22.6 Plus
trol-PAV 3973 CG33950-PAV 2334..2668 97..441 172 22.6 Plus
trol-PAZ 3989 CG33950-PAZ 2350..2684 97..441 172 22.6 Plus
trol-PAW 4007 CG33950-PAW 2368..2702 97..441 172 22.6 Plus
trol-PAR 4150 CG33950-PAR 2511..2845 97..441 172 22.6 Plus
trol-PAN 4150 CG33950-PAN 2511..2845 97..441 172 22.6 Plus
trol-PAK 4176 CG33950-PAK 2537..2871 97..441 172 22.6 Plus
trol-PBA 4203 CG33950-PBA 2564..2898 97..441 172 22.6 Plus
trol-PAE 4223 CG33950-PAE 2584..2918 97..441 172 22.6 Plus
trol-PAQ 4299 CG33950-PAQ 2660..2994 97..441 172 22.6 Plus
trol-PAH 4411 CG33950-PAH 2772..3106 97..441 172 22.6 Plus
trol-PAF 4434 CG33950-PAF 2795..3129 97..441 172 22.6 Plus
trol-PAU 4451 CG33950-PAU 2812..3146 97..441 172 22.6 Plus
trol-PAT 4479 CG33950-PAT 2812..3146 97..441 172 22.6 Plus
Dscam3-PD 1006 CG31190-PD 89..441 117..452 171 24.5 Plus
Dscam3-PC 2007 CG31190-PC 89..441 117..452 171 24.5 Plus
Dscam3-PF 2077 CG31190-PF 89..441 117..452 171 24.5 Plus
Dscam3-PE 2087 CG31190-PE 89..441 117..452 171 24.5 Plus
Dscam1-PAR 2034 CG17800-PAR 531..800 163..435 169 23.2 Plus
Dscam1-PBS 2016 CG17800-PBS 527..797 163..435 168 23.2 Plus
Dscam1-PZ 2017 CG17800-PZ 528..798 163..435 168 23.2 Plus
Dscam1-PM 2017 CG17800-PM 528..798 163..435 168 23.2 Plus
Dscam1-PAO 2032 CG17800-PAO 528..798 163..435 168 23.2 Plus
Dscam1-PY 2035 CG17800-PY 531..801 163..435 168 23.2 Plus
Dscam1-PC 2016 CG17800-PC 527..797 163..435 167 24.7 Plus
Dscam1-PA 2016 CG17800-PA 527..797 163..435 167 24.7 Plus
Dscam1-PAM 2017 CG17800-PAM 528..798 163..435 167 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22773-PA 1286 GI22773-PA 20..1286 40..1298 4308 65.1 Plus
Dmoj\GI15895-PA 1068 GI15895-PA 101..420 123..456 195 26.8 Plus
Dmoj\GI17739-PA 897 GI17739-PA 107..429 119..446 182 27.8 Plus
Dmoj\GI19234-PA 1401 GI19234-PA 64..508 98..447 177 22.6 Plus
Dmoj\GI16778-PA 1816 GI16778-PA 353..602 129..393 170 23.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23656-PA 1282 GL23656-PA 15..1282 30..1298 4973 75.8 Plus
Dper\GL22542-PA 944 GL22542-PA 353..602 129..393 177 24.1 Plus
Dper\GL25599-PA 906 GL25599-PA 114..433 123..446 172 26.3 Plus
Dper\GL23930-PA 2078 GL23930-PA 73..466 93..460 169 24.2 Plus
Dper\GL22623-PA 1534 GL22623-PA 241..548 170..447 167 21.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19633-PA 1279 GA19633-PA 20..1279 38..1298 4960 76 Plus
Dpse\GA22276-PA 1026 GA22276-PA 165..430 187..458 183 25.4 Plus
Dpse\GA24633-PA 1774 GA24633-PA 353..602 129..393 178 24.1 Plus
Dpse\GA21616-PA 903 GA21616-PA 114..433 123..446 172 26.3 Plus
Dpse\GA16078-PA 2077 GA16078-PA 72..465 93..460 170 24.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10182-PA 1305 GM10182-PA 22..1305 38..1298 6686 97 Plus
Dsec\GM13730-PA 880 GM13730-PA 179..438 187..451 188 30.3 Plus
Dsec\GM25036-PA 1531 GM25036-PA 353..602 129..393 175 24.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18134-PA 1305 GD18134-PA 22..1305 38..1298 6721 97.4 Plus
Dsim\GD20229-PA 753 GD20229-PA 89..460 117..460 167 23.8 Plus
Dsim\GD23092-PA 998 GD23092-PA 90..339 129..393 161 23.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22775-PA 1301 GJ22775-PA 26..1301 40..1298 4436 66 Plus
Dvir\GJ17563-PA 907 GJ17563-PA 109..439 119..451 193 27.5 Plus
Dvir\GJ16643-PA 1042 GJ16643-PA 105..438 123..458 185 26.5 Plus
Dvir\GJ12521-PA 1775 GJ12521-PA 353..602 129..393 171 23.4 Plus
Dvir\GJ16993-PA 1375 GJ16993-PA 90..339 129..393 165 23.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12145-PA 1308 GK12145-PA 1..1308 1..1298 4596 69.5 Plus
Dwil\GK17189-PA 1775 GK17189-PA 353..602 129..393 175 23.7 Plus
Dwil\GK24917-PA 1040 GK24917-PA 100..428 123..456 174 25.2 Plus
Dwil\GK11449-PA 2028 GK11449-PA 74..469 91..460 170 23.9 Plus
Dwil\GK15186-PA 1391 GK15186-PA 90..339 129..393 165 23.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10629-PA 1268 GE10629-PA 22..1268 38..1298 6565 96.7 Plus
Dyak\GE20723-PA 1815 GE20723-PA 353..602 129..393 176 24.1 Plus
Dyak\GE17528-PA 1346 GE17528-PA 90..339 129..393 168 23.7 Plus
Dyak\GE18390-PA 880 GE18390-PA 112..438 123..451 164 27.2 Plus

MIP08606.hyp Sequence

Translation from 409 to 4305

> MIP08606.hyp
MCLFYNRRLFVIQLIEILLLLLTDHNGRLTLTKESTTVAAAVAQPKNSTA
LQPYLQIQKHAVTRLTISKPHSPYYLPCIPILTPYNHDQDNQPIYCSWYR
NDVVVEQVSYRKNDFFIYDNGTLRLPTNEKASGEYYCKIEWDESAVISDR
ITVEYPVLKRLFPGQQQAANISALENKPLVLSCPFLSVPAARFSWYFGND
SLTNDNSALILTNGTLILRHLRLEQAGKYKCVAQNTFASKTHRQFIWQLQ
VEPKDATFYPKNEAGITETAVSEAQLLPAFQNATVFVPAGGSVLLQCHAV
ADFVPIVWYLQPPNNKMVRLSNNSVAYSITNASIARHEGRYSCITPLETQ
NFQVIVTTPPRIVSRLPVEVVYIGLSRTLTCRAEGHPEPSITWYHNGVHL
NSSYTRYISGNELHVHSFDSKEEGIYQCVARNVAGEDSATGELRFNRQLE
EVNPLQNIRCYPHSFHSINITFDSRTLTSMFVVYIVRNNPHSWTSFSPMK
LNQTSYVVISTDLPVYEPFALITRVLFPTTEVRTGTLVPQQMILSSLRST
PVTCCTQGLMLRPIAVGNDTFVKWSQGQLENKKYFILQFSINHTHPHPAQ
LLNGSLQGTLTSVEEKADQVRHHLTEIQPLNQSAAATVLRNVEHEDNVVD
DTLELEDDIFSLVVDASVTGILLQRFTRIKMRVLIITTENEFLGQDFRYV
QWKIIENGTSEQSNMPFRLVTRESRALAFKFLDSLNETCVLECHTEIQAQ
MSLPSQDPKCQDRNIANSLLLVTGLKPDTRYNLHFYNCKTRIFYGDIDEK
TEQDPPGTISNSKLIKQNGLKLMWEPPINPNGRVHHYDIRWSLDNVTHEA
IVKECTKCSYKFPNVSETAKIHVAVRVMGDTGAGAPMYFDMINNNHTWLK
EESESSHSEVYSGIAIGSLLSIACVFLFGLFIIFQQRNFKARAQGPTHLT
TPTDINFGNLSSASGMPGDSAGGLSGGTLQQDCHEMQTLIPRSRYHIELL
PEHSLEYQTSTAAVAVVHLANGNGSVQVARRSDQDGAAQGDLGIAGVHNL
SQLPLCGVGGTSPERKTVQDAMLQEAKAFYIPYRHTPPNAVALSSSKQCA
VPSGSELEVIVPPNSLPLVTTMPGLGVVGGGGSGGGGVGGSSRRSGSLSS
SSASSSSNGSSKKQFHTNFVRHSNSNDGIYLLAEEEAAATLTPTSEREYA
AVCLTNGFKLPADVAKSGGGTYNTTNNNNSSTNTSQKSATAKERQPRGNG
NPISFSHNACKVPANGPASVNVNHSSAVKQSWPAATVVHRRAQVDPNG*

MIP08606.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
plum-PD 1298 CG6490-PD 1..1298 1..1298 6799 100 Plus
plum-PC 1298 CG6490-PC 1..1298 1..1298 6799 100 Plus
plum-PB 1298 CG6490-PB 1..1298 1..1298 6799 100 Plus
plum-PE 1298 CG6490-PE 1..1298 1..1298 6799 100 Plus
ihog-PA 886 CG9211-PA 118..444 123..451 198 27.3 Plus