Clone Sequence Records
MIP08660.complete Sequence
2162 bp assembled on 2009-04-07
GenBank Submission: BT082001.1
> MIP08660.complete
AGTAACTCTCTGGTCGCCTATTAATATTCATATGTGCAAAGCAAAGTATC
ATTGGAATCTCTTGGATGAACATCATTATGGTATTTAAAGCTCTTGATTT
ATCAGATTTCATTTCTTTGTATTAGAAACGTAATCAATATGTTTTCGCTC
ATCTCTGGCGAAAAATTACTCTTCCTCAATCTTTTGGCTGCCGAAAAAGT
AGCCAGACGAATGTCCACATGTGCCGGGTATGTTGTATATAGTATCTGAT
GTCTGGACTTTTATTGTATGGCTGACCTTGAATTTATGGAAATTGCATAA
GTGGGAAGAAGTTTGTCATATTAAGAAATATACTGGAAGCATAGAAAGCC
GAAGGCAGTGATGGTGACATAAACGACCAGACCTTGGCATTGTGTTGAAG
GACTGTGAATCGAATTATTCGAGGAAGTTGCTTGAATTATGGCTCAAGGG
GGTACTTTGAATTTATGAGTATTCAGGATATTAAGAATGTCTTTTTTTTC
GCCGGCCAGCACCATCCATCCATCTTCCACACCCCGAAAACCAAACGAAA
TCCGCTTCCTGCTGCCAAATAATTTACAACTTGCGAATGCGATGCACAGG
CTATGGGAAGAAAACAAATAATGATCAGTCGCACATAATGCATGCATATA
TCCATGGGCATATCGATAACCCTTATCAAGTGTGCGGCATCGCGGCCAAA
AATATACAAATTATGCTTACCAAAAGGCAGAGAAAACATAAATCAATGGT
TTTGGAATACTCTAACCAAGACAGCAATGTATGAAACTTCAAACATTTTT
CCTTATTTCCAAATTTACTTAAGAGATATTAAGATAAGTATACAAGAAGT
GCAAATTTGTTGTACCTACTTAAATATTCATATGCATACATGTATGTACA
TACATATATGGTTATTTGCGTGTGGTTGGTCGCCTCAAGTGATGGGCGTG
GCACTTTCAACTCTGGTTCAACCCATACAATCATGAAAACTCTGACCAGA
TCTTGCCAAAAATGAGCCCACCTTGAACCTGAGTTTATCAAATTGCAGTC
ATTTTGCTTGTGGTTTTTATAGTACTTTCAAATAACTGAGATTAGTTGGT
CAGTATCGTTACAAAAAAAAGGGTAAAAGTGATCGACTTTTTCACTTTCC
GCCAATTTGAGGATATTTGCAGAGATTTGAGTGTTGCATGATTCATAATC
GAACATTTATATCATAAAAAAGTAAACAGTTCAGTTGCTTATTTATTACG
CAGAATTGCCTTAAGAGTTCAATTAACCATTAAATATTTTTAGAGGTGAA
ACAACGTTTGCCCTCACTTAATCGACAAAATTTGAACTAATTCGAATAAA
ATTAAGAGTCAGAACGAATTCACGAGTGGCTAAATTATTGTTTAAAATGA
CCAAGGGCGTGAGGATTTGCAACGATGGATTGCCTGGTTTGCCGAATGAA
AGGCCATATTCCCGAAGAACTTTAGATACGCGGCAAAAGACTCAGAAGAT
GTCCTCCAGGCCATCTAGGAAACCATTGCAGTCTCTACAAACTGTCGGTC
GGAATACGAGTTCCAGCCTGAAGCGCATAGGAAGTCCGATCTCCGAGGAA
GAATTTGGTGTCCTGGTGCAGCAGGATTGTAAGGCAGAGCAGCATCACAC
CGATCGCCAAAACCTGGCGGACATAATCCTTATGCAGGCCCGTCGCATCG
AGAAGCAGCAGCGGGAGATGAAAAGAATAAAGGCGCACTATGAGCGCCAG
GTGTCCACCATCAAGAACAATGCCATCATGCTGGAGTCGCATCTGCAAAA
GGTGCTGGCCAGTGTCGAAAGGGATCGGGCCAAGCGGATTGGCCACCACT
GCCAGGACATGCTCGGTGCCGTGGAGAAGCTGCAAAGGAGCGACATCCAA
GTGAAGCCGCAATCTTCGGCCAACCAATTGCTGATCCAGTATCTTCACTC
CAAGAAAATTTCGCATTCGACCAAGAAGTCCAATGAAAACACAAGTAGGT
ACAGGAATATGTTGTGAATCGTATTCTTGTGTGTACATTGTGGTTTCACT
GGGTTTTGTGGTCAGCTTAAATTAGCATATATGTGTATTAATAGAAGTAC
AAGTTATTATAAAATAAAATAATGGCAACAATGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
MIP08660.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6333-RB | 2133 | CG6333-RB | 1..2133 | 1..2133 | 10665 | 100 | Plus |
CG6333-RA | 1028 | CG6333-RA | 193..1028 | 1294..2129 | 4180 | 100 | Plus |
CG6333-RA | 1028 | CG6333-RA | 1..192 | 587..778 | 960 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 17469659..17471653 | 2133..139 | 9870 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 17471735..17471832 | 138..41 | 490 | 100 | Minus |
chr3L | 24539361 | chr3L | 17475721..17475761 | 41..1 | 205 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:10:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17480127..17482123 | 2135..139 | 9985 | 100 | Minus |
3L | 28110227 | 3L | 17482205..17482302 | 138..41 | 490 | 100 | Minus |
3L | 28110227 | 3L | 17486190..17486230 | 41..1 | 205 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 17473227..17475223 | 2135..139 | 9985 | 100 | Minus |
3L | 28103327 | 3L | 17475305..17475402 | 138..41 | 490 | 100 | Minus |
3L | 28103327 | 3L | 17479290..17479330 | 41..1 | 205 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 15:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 274..403 | 912..783 | 136 | 61.2 | Minus |
MIP08660.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:09:24 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 17469659..17471653 | 139..2133 | 99 | <- | Minus |
chr3L | 17471735..17471832 | 41..138 | 100 | <- | Minus |
chr3L | 17475722..17475761 | 1..40 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:08:54 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6333-RA | 1..621 | 1397..2017 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:44:13 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6333-RB | 1..621 | 1397..2017 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:41:06 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6333-RA | 1..621 | 1397..2017 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:41:16 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6333-RA | 1..621 | 1397..2017 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-07 15:21:41 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6333-RA | 1..694 | 1324..2017 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:44:13 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6333-RB | 1..2133 | 1..2133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:41:06 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6333-RB | 1..2133 | 1..2133 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:41:16 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6333-RB | 1..2133 | 1..2133 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:24 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17480129..17482123 | 139..2133 | 100 | <- | Minus |
3L | 17482205..17482302 | 41..138 | 100 | <- | Minus |
3L | 17486191..17486230 | 1..40 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:24 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17480129..17482123 | 139..2133 | 100 | <- | Minus |
3L | 17482205..17482302 | 41..138 | 100 | <- | Minus |
3L | 17486191..17486230 | 1..40 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:24 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17480129..17482123 | 139..2133 | 100 | <- | Minus |
3L | 17482205..17482302 | 41..138 | 100 | <- | Minus |
3L | 17486191..17486230 | 1..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:41:06 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17473229..17475223 | 139..2133 | 100 | <- | Minus |
arm_3L | 17475305..17475402 | 41..138 | 100 | <- | Minus |
arm_3L | 17479291..17479330 | 1..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:19:19 Download gff for
MIP08660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17473229..17475223 | 139..2133 | 100 | <- | Minus |
3L | 17475305..17475402 | 41..138 | 100 | <- | Minus |
3L | 17479291..17479330 | 1..40 | 100 | | Minus |
MIP08660.pep Sequence
Translation from 1396 to 2016
> MIP08660.pep
MTKGVRICNDGLPGLPNERPYSRRTLDTRQKTQKMSSRPSRKPLQSLQTV
GRNTSSSLKRIGSPISEEEFGVLVQQDCKAEQHHTDRQNLADIILMQARR
IEKQQREMKRIKAHYERQVSTIKNNAIMLESHLQKVLASVERDRAKRIGH
HCQDMLGAVEKLQRSDIQVKPQSSANQLLIQYLHSKKISHSTKKSNENTS
RYRNML*
MIP08660.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF23909-PA | 150 | GF23909-PA | 1..149 | 1..144 | 165 | 35.8 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG15806-PA | 210 | GG15806-PA | 1..210 | 1..206 | 890 | 83.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6333-PB | 206 | CG6333-PB | 1..206 | 1..206 | 1045 | 100 | Plus |
CG6333-PA | 206 | CG6333-PA | 1..206 | 1..206 | 1045 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24328-PA | 169 | GM24328-PA | 1..169 | 1..171 | 747 | 86.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD12401-PA | 204 | GD12401-PA | 1..204 | 1..206 | 919 | 88.4 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE22145-PA | 213 | GE22145-PA | 1..213 | 1..206 | 859 | 80.3 | Plus |
MIP08660.hyp Sequence
Translation from 1396 to 2016
> MIP08660.hyp
MTKGVRICNDGLPGLPNERPYSRRTLDTRQKTQKMSSRPSRKPLQSLQTV
GRNTSSSLKRIGSPISEEEFGVLVQQDCKAEQHHTDRQNLADIILMQARR
IEKQQREMKRIKAHYERQVSTIKNNAIMLESHLQKVLASVERDRAKRIGH
HCQDMLGAVEKLQRSDIQVKPQSSANQLLIQYLHSKKISHSTKKSNENTS
RYRNML*
MIP08660.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6333-PB | 206 | CG6333-PB | 1..206 | 1..206 | 1045 | 100 | Plus |
CG6333-PA | 206 | CG6333-PA | 1..206 | 1..206 | 1045 | 100 | Plus |