Clone MIP08660 Report

Search the DGRC for MIP08660

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:86
Well:60
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG6333-RA
Protein status:MIP08660.pep: gold
Sequenced Size:2162

Clone Sequence Records

MIP08660.complete Sequence

2162 bp assembled on 2009-04-07

GenBank Submission: BT082001.1

> MIP08660.complete
AGTAACTCTCTGGTCGCCTATTAATATTCATATGTGCAAAGCAAAGTATC
ATTGGAATCTCTTGGATGAACATCATTATGGTATTTAAAGCTCTTGATTT
ATCAGATTTCATTTCTTTGTATTAGAAACGTAATCAATATGTTTTCGCTC
ATCTCTGGCGAAAAATTACTCTTCCTCAATCTTTTGGCTGCCGAAAAAGT
AGCCAGACGAATGTCCACATGTGCCGGGTATGTTGTATATAGTATCTGAT
GTCTGGACTTTTATTGTATGGCTGACCTTGAATTTATGGAAATTGCATAA
GTGGGAAGAAGTTTGTCATATTAAGAAATATACTGGAAGCATAGAAAGCC
GAAGGCAGTGATGGTGACATAAACGACCAGACCTTGGCATTGTGTTGAAG
GACTGTGAATCGAATTATTCGAGGAAGTTGCTTGAATTATGGCTCAAGGG
GGTACTTTGAATTTATGAGTATTCAGGATATTAAGAATGTCTTTTTTTTC
GCCGGCCAGCACCATCCATCCATCTTCCACACCCCGAAAACCAAACGAAA
TCCGCTTCCTGCTGCCAAATAATTTACAACTTGCGAATGCGATGCACAGG
CTATGGGAAGAAAACAAATAATGATCAGTCGCACATAATGCATGCATATA
TCCATGGGCATATCGATAACCCTTATCAAGTGTGCGGCATCGCGGCCAAA
AATATACAAATTATGCTTACCAAAAGGCAGAGAAAACATAAATCAATGGT
TTTGGAATACTCTAACCAAGACAGCAATGTATGAAACTTCAAACATTTTT
CCTTATTTCCAAATTTACTTAAGAGATATTAAGATAAGTATACAAGAAGT
GCAAATTTGTTGTACCTACTTAAATATTCATATGCATACATGTATGTACA
TACATATATGGTTATTTGCGTGTGGTTGGTCGCCTCAAGTGATGGGCGTG
GCACTTTCAACTCTGGTTCAACCCATACAATCATGAAAACTCTGACCAGA
TCTTGCCAAAAATGAGCCCACCTTGAACCTGAGTTTATCAAATTGCAGTC
ATTTTGCTTGTGGTTTTTATAGTACTTTCAAATAACTGAGATTAGTTGGT
CAGTATCGTTACAAAAAAAAGGGTAAAAGTGATCGACTTTTTCACTTTCC
GCCAATTTGAGGATATTTGCAGAGATTTGAGTGTTGCATGATTCATAATC
GAACATTTATATCATAAAAAAGTAAACAGTTCAGTTGCTTATTTATTACG
CAGAATTGCCTTAAGAGTTCAATTAACCATTAAATATTTTTAGAGGTGAA
ACAACGTTTGCCCTCACTTAATCGACAAAATTTGAACTAATTCGAATAAA
ATTAAGAGTCAGAACGAATTCACGAGTGGCTAAATTATTGTTTAAAATGA
CCAAGGGCGTGAGGATTTGCAACGATGGATTGCCTGGTTTGCCGAATGAA
AGGCCATATTCCCGAAGAACTTTAGATACGCGGCAAAAGACTCAGAAGAT
GTCCTCCAGGCCATCTAGGAAACCATTGCAGTCTCTACAAACTGTCGGTC
GGAATACGAGTTCCAGCCTGAAGCGCATAGGAAGTCCGATCTCCGAGGAA
GAATTTGGTGTCCTGGTGCAGCAGGATTGTAAGGCAGAGCAGCATCACAC
CGATCGCCAAAACCTGGCGGACATAATCCTTATGCAGGCCCGTCGCATCG
AGAAGCAGCAGCGGGAGATGAAAAGAATAAAGGCGCACTATGAGCGCCAG
GTGTCCACCATCAAGAACAATGCCATCATGCTGGAGTCGCATCTGCAAAA
GGTGCTGGCCAGTGTCGAAAGGGATCGGGCCAAGCGGATTGGCCACCACT
GCCAGGACATGCTCGGTGCCGTGGAGAAGCTGCAAAGGAGCGACATCCAA
GTGAAGCCGCAATCTTCGGCCAACCAATTGCTGATCCAGTATCTTCACTC
CAAGAAAATTTCGCATTCGACCAAGAAGTCCAATGAAAACACAAGTAGGT
ACAGGAATATGTTGTGAATCGTATTCTTGTGTGTACATTGTGGTTTCACT
GGGTTTTGTGGTCAGCTTAAATTAGCATATATGTGTATTAATAGAAGTAC
AAGTTATTATAAAATAAAATAATGGCAACAATGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

MIP08660.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-RB 2133 CG6333-RB 1..2133 1..2133 10665 100 Plus
CG6333-RA 1028 CG6333-RA 193..1028 1294..2129 4180 100 Plus
CG6333-RA 1028 CG6333-RA 1..192 587..778 960 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17469659..17471653 2133..139 9870 99.6 Minus
chr3L 24539361 chr3L 17471735..17471832 138..41 490 100 Minus
chr3L 24539361 chr3L 17475721..17475761 41..1 205 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:10:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17480127..17482123 2135..139 9985 100 Minus
3L 28110227 3L 17482205..17482302 138..41 490 100 Minus
3L 28110227 3L 17486190..17486230 41..1 205 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17473227..17475223 2135..139 9985 100 Minus
3L 28103327 3L 17475305..17475402 138..41 490 100 Minus
3L 28103327 3L 17479290..17479330 41..1 205 100 Minus
Blast to na_te.dros performed 2019-03-16 15:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 274..403 912..783 136 61.2 Minus

MIP08660.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:09:24 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17469659..17471653 139..2133 99 <- Minus
chr3L 17471735..17471832 41..138 100 <- Minus
chr3L 17475722..17475761 1..40 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:08:54 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 1..621 1397..2017 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:44:13 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RB 1..621 1397..2017 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:41:06 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 1..621 1397..2017 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:41:16 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 1..621 1397..2017 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-07 15:21:41 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RA 1..694 1324..2017 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:44:13 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RB 1..2133 1..2133 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:41:06 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RB 1..2133 1..2133 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:41:16 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
CG6333-RB 1..2133 1..2133 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:24 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17480129..17482123 139..2133 100 <- Minus
3L 17482205..17482302 41..138 100 <- Minus
3L 17486191..17486230 1..40 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:24 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17480129..17482123 139..2133 100 <- Minus
3L 17482205..17482302 41..138 100 <- Minus
3L 17486191..17486230 1..40 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:24 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17480129..17482123 139..2133 100 <- Minus
3L 17482205..17482302 41..138 100 <- Minus
3L 17486191..17486230 1..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:41:06 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17473229..17475223 139..2133 100 <- Minus
arm_3L 17475305..17475402 41..138 100 <- Minus
arm_3L 17479291..17479330 1..40 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:19:19 Download gff for MIP08660.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17473229..17475223 139..2133 100 <- Minus
3L 17475305..17475402 41..138 100 <- Minus
3L 17479291..17479330 1..40 100   Minus

MIP08660.pep Sequence

Translation from 1396 to 2016

> MIP08660.pep
MTKGVRICNDGLPGLPNERPYSRRTLDTRQKTQKMSSRPSRKPLQSLQTV
GRNTSSSLKRIGSPISEEEFGVLVQQDCKAEQHHTDRQNLADIILMQARR
IEKQQREMKRIKAHYERQVSTIKNNAIMLESHLQKVLASVERDRAKRIGH
HCQDMLGAVEKLQRSDIQVKPQSSANQLLIQYLHSKKISHSTKKSNENTS
RYRNML*

MIP08660.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23909-PA 150 GF23909-PA 1..149 1..144 165 35.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15806-PA 210 GG15806-PA 1..210 1..206 890 83.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-PB 206 CG6333-PB 1..206 1..206 1045 100 Plus
CG6333-PA 206 CG6333-PA 1..206 1..206 1045 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24328-PA 169 GM24328-PA 1..169 1..171 747 86.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12401-PA 204 GD12401-PA 1..204 1..206 919 88.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22145-PA 213 GE22145-PA 1..213 1..206 859 80.3 Plus

MIP08660.hyp Sequence

Translation from 1396 to 2016

> MIP08660.hyp
MTKGVRICNDGLPGLPNERPYSRRTLDTRQKTQKMSSRPSRKPLQSLQTV
GRNTSSSLKRIGSPISEEEFGVLVQQDCKAEQHHTDRQNLADIILMQARR
IEKQQREMKRIKAHYERQVSTIKNNAIMLESHLQKVLASVERDRAKRIGH
HCQDMLGAVEKLQRSDIQVKPQSSANQLLIQYLHSKKISHSTKKSNENTS
RYRNML*

MIP08660.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6333-PB 206 CG6333-PB 1..206 1..206 1045 100 Plus
CG6333-PA 206 CG6333-PA 1..206 1..206 1045 100 Plus