Clone MIP09392 Report

Search the DGRC for MIP09392

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:93
Well:92
Vector:pOT2
Associated Gene/TranscriptCNMa-RB
Protein status:MIP09392.pep: gold
Sequenced Size:1913

Clone Sequence Records

MIP09392.complete Sequence

1913 bp assembled on 2009-06-11

GenBank Submission: BT088807.1

> MIP09392.complete
AGTACGCCCTAGATGATAGTAAAATACTTACGGTTCAGAGATCGAAGTGG
TACATAATTCAAGTGACTTAATTTGCTGACACAGCGCACCCAAATGACCC
ATCCCCAGTGCTGTAGCGCAGTCAGCAGCGCCAACTGGCCCACCGATCAT
AAATCTTGGCTTTATCGGTCGATTTGTCAAAAGCGTGGCACGACAAGCGC
ACGAAGATCGCGGCCGAAGGCTCCAACCGACTTGAGTCGGTGCTGGTGGG
ATTCGATGAGTTAGTTCGCCGCCAGAGCAGAACGCGTTTAGTAGGAATCC
GAGTGCCTAAATCCGAGATTGTGCCCAAAATTAGAAGCGCAGAAATAAAA
TTACAAAAACTTTTCAAGTACTCGTGCAACCAGAGACCCAAACCCCACAA
ACACTCAATACCCCACCCATTGGTGGGCGAAAATCCAGTCCATCCGAGCC
GCCCACACGAGCATTTGACTTCTGTCACCTCCGAAGTGGAAAAGTCGTCG
GTTGTTGATTTTCACCTGTTGATTTACCCTTTTTGCGGCGTCGGTCTTCG
AGCGCCTATATAAACAAATGCTCCCAACGGACCTGCGTTTATTCTGCATT
GTCACACCTAACGGTTGAGATTCGCCAGCGGAGAATAAAATACAAAAAAA
TAATTTAAAGCCAAATCAGCAATCTATTTAGTGGCGTTCATTAGCTGGCT
GAAGCTCTAATTTGACATTTATTTTTGGAACAACTCAGTAAAAAAGTACA
GCTACAGTAAAAAGTACAGTTACAGTGAAAAGTGTTAACCGGAACTGACA
GAATTCGGGATCAAGTGTCAAGAACTAGACATATCTGTCAAAGTTTTCAA
TTGTTTCCTGTGAATTTGGACAAAGTTGAGGATGTCCGCCCTGTCCGCGC
CCACCACATGTGGCTGCTCGCCTGTCCACTGGGCCATTGTCATTGTGCTC
CTGTCAGTGGCGATTGGACCGGGAGACGCCATGGCCCGTCCAGCGCGCAA
CACGCAGTTGTTGTTCAGCGAGCTCTTGGGGGGCGGAAACGATGATAACA
ACTACTACGGCGACCAGTTGAAGTACCAGCAACAGCAACAGCAACAGCAG
GAACAGAAGCAGCAGCGGGTGCCGGCTTTCGCCAGGAAGTGGCCCTCGCT
GAGGGATCTGTTGCTCACCGTGGACTACGATGACTTCGGGGTTACCCAGG
AGAGCGAGGAGCAGGTGGCGCCCAGTTCCCGCCTGCTGGCTCGACTGCAC
AGGCTCGGCGATAATGGAGGCGGCGAGGAGCTGCGGTACAACGTCGTTAA
CGAACTGACCAATATGCCCAGCAAGAAGGTGATGCCAGGACATCCCCTCA
AGGATCACAACACCAAGAAGAACGTTCAGTTTCGTAAACAATATATGTCG
CCTTGCCACTTCAAGATCTGCAACATGGGACGCAAACGCAACGCTGGCTT
CAATTCCTACTGAAGAAACCAAATGCTGTAGATCCGCAATGCCAAATAAG
CCAAACAAACCAAAGTCAAATAAACCCTTTCCAAAAATCAAAGAATTTGC
ATTGTCACAAAAAGAAAAACGTTGGACGAAAGTTCAAATGCCAAGTATTG
TCTACCGTTCTAATTTAGTTACCAAACCCGCGAGGAATTTAGTTAGAAAC
TACGATTACATTGTACTTATACATAATGTCTCGACTTACACACACTGACA
CACATCTGATACCCGCTCTCTGCACACCGACATTCACACACACGCACACA
CCGAAGTATTTCCATATTAGTTCTAATATATAAATATTATCTATGATTCT
TGTTGTATTCGAAATACATTAAATTATGATAACCAACAAAATGTTGCTAG
ATATTAAGCCCAAAATACATACTACTGAAAAATATTTATTGAAAACAAAA
AAAAAAAAAAAAA

MIP09392.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13936.c 2120 CG13936.c 145..2052 1..1904 9440 99.7 Plus
CG13936.a 2187 CG13936.a 212..2119 1..1904 9440 99.7 Plus
CG13936.b 1744 CG13936.b 1..1676 229..1904 8365 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1854262..1855144 880..1 4155 98.5 Minus
chr3L 24539361 chr3L 1850456..1850956 1896..1393 2315 98.2 Minus
chr3L 24539361 chr3L 1851191..1851501 1380..1070 1435 97.4 Minus
chr3L 24539361 chr3L 1851581..1851777 1070..874 925 98 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:10:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1854708..1855591 880..1 4310 99.4 Minus
3L 28110227 3L 1850907..1851418 1904..1393 2545 99.8 Minus
3L 28110227 3L 1851662..1851972 1380..1070 1555 100 Minus
3L 28110227 3L 1852052..1852248 1070..874 985 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1854708..1855591 880..1 4320 99.4 Minus
3L 28103327 3L 1850907..1851418 1904..1393 2545 99.8 Minus
3L 28103327 3L 1851662..1851972 1380..1070 1555 100 Minus
3L 28103327 3L 1852052..1852248 1070..874 985 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:47:12 has no hits.

MIP09392.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:48:14 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1850456..1850967 1379..1896 96 <- Minus
chr3L 1851193..1851454 1117..1378 96 == Minus
chr3L 1851581..1851775 876..1070 97 <- Minus
chr3L 1854267..1855144 1..875 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:10:24 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RA 1..570 882..1463 97   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:47:40 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RB 1..582 882..1463 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:03:12 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RC 1..582 882..1463 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:37 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
CNMa-RC 1..582 882..1463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-11 13:12:06 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RA 1..570 882..1463 97   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:47:40 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RC 1..1900 1..1896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:03:12 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
CG13936-RC 1..1900 1..1896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:37 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
CNMa-RC 1..1900 1..1896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:14 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1850915..1851429 1379..1896 98 <- Minus
3L 1851664..1851971 1071..1378 100 <- Minus
3L 1852052..1852246 876..1070 100 <- Minus
3L 1854713..1855591 1..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:14 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1850915..1851429 1379..1896 98 <- Minus
3L 1851664..1851971 1071..1378 100 <- Minus
3L 1852052..1852246 876..1070 100 <- Minus
3L 1854713..1855591 1..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:48:14 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1850915..1851429 1379..1896 98 <- Minus
3L 1851664..1851971 1071..1378 100 <- Minus
3L 1852052..1852246 876..1070 100 <- Minus
3L 1854713..1855591 1..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:03:12 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1850915..1851429 1379..1896 98 <- Minus
arm_3L 1851664..1851971 1071..1378 100 <- Minus
arm_3L 1852052..1852246 876..1070 100 <- Minus
arm_3L 1854713..1855591 1..875 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:23:09 Download gff for MIP09392.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1852052..1852246 876..1070 100 <- Minus
3L 1850915..1851429 1379..1896 98 <- Minus
3L 1851664..1851971 1071..1378 100 <- Minus
3L 1854713..1855591 1..875 99   Minus

MIP09392.pep Sequence

Translation from 881 to 1462

> MIP09392.pep
MSALSAPTTCGCSPVHWAIVIVLLSVAIGPGDAMARPARNTQLLFSELLG
GGNDDNNYYGDQLKYQQQQQQQQEQKQQRVPAFARKWPSLRDLLLTVDYD
DFGVTQESEEQVAPSSRLLARLHRLGDNGGGEELRYNVVNELTNMPSKKV
MPGHPLKDHNTKKNVQFRKQYMSPCHFKICNMGRKRNAGFNSY*

MIP09392.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24955-PA 184 GF24955-PA 1..179 1..189 616 71.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14554-PA 187 GG14554-PA 1..187 1..193 842 88.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15040-PA 149 GH15040-PA 3..144 41..189 329 53.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CNMa-PB 193 CG13936-PB 1..193 1..193 1029 100 Plus
CNMa-PC 193 CG13936-PC 1..193 1..193 1029 100 Plus
CNMa-PD 189 CG13936-PD 1..189 1..193 993 97.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16692-PA 197 GI16692-PA 2..165 8..167 220 39.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24821-PA 184 GL24821-PA 3..179 8..189 640 73.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12640-PA 184 GA12640-PA 3..179 8..189 640 73.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14162-PA 186 GM14162-PA 1..186 1..193 871 91.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13433-PA 186 GD13433-PA 1..186 1..193 883 92.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12944-PA 210 GJ12944-PA 1..210 1..193 428 54.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:57:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20562-PA 206 GK20562-PA 3..203 8..191 404 51 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20908-PA 191 GE20908-PA 1..191 1..193 828 87.2 Plus

MIP09392.hyp Sequence

Translation from 881 to 1462

> MIP09392.hyp
MSALSAPTTCGCSPVHWAIVIVLLSVAIGPGDAMARPARNTQLLFSELLG
GGNDDNNYYGDQLKYQQQQQQQQEQKQQRVPAFARKWPSLRDLLLTVDYD
DFGVTQESEEQVAPSSRLLARLHRLGDNGGGEELRYNVVNELTNMPSKKV
MPGHPLKDHNTKKNVHISPDMSPCHFKICNMGRKRNAGFNSY*

MIP09392.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CNMa-PB 193 CG13936-PB 1..193 1..192 982 96.9 Plus
CNMa-PC 193 CG13936-PC 1..193 1..192 982 96.9 Plus
CNMa-PD 189 CG13936-PD 1..189 1..192 981 97.4 Plus