Clone MIP09607 Report

Search the DGRC for MIP09607

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:96
Well:7
Vector:pOT2
Associated Gene/TranscriptCG42789-RB
Protein status:MIP09607.pep: gold
Sequenced Size:509

Clone Sequence Records

MIP09607.complete Sequence

509 bp assembled on 2009-03-18

GenBank Submission: BT072937.1

> MIP09607.complete
CCAGTCGACCATGGAGGTTCTTTGGCTGCTTCTTTTGGTATCGCATCTGA
GTTCAACGCAGGGCGAGGGAAACTGTACCACCTGTGCTGCTTGGGTCGAG
CGTGCGGTATGTGGCTATAATAATAGATGCTTTACGAGTTTCAAGAGCAC
CTGCGAAATGGAAATGATCAATTGCAAACTACCGGACGTCTACAAATTCA
AAGAAACACCTTATTATGGACACTGCTTTAGATCCACCATACAAAAGTGC
AAGGCCTATGTCCTGTTGCAGCAGCTGAACAAAAAGGACAACTCCGTTGA
AATGTTCGCTTAGTTAGTACCATTTATTAATAATATTGAAAAGCAAATAT
GGCACACAACATACGAAATTGTACCGAATAATATTAAAAAACCATTGTTT
AACCATTAACCCCCTTTTAACTGCCATAATAGGCTGGCAGTAAATAAAAT
ATTTTACTTAAATCAGCCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA

MIP09607.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
DMG8-chr3R.40.015.a 569 DMG8-chr3R.40.015.a 97..569 1..473 2365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22606725..22607003 473..195 1395 100 Minus
chr3R 27901430 chr3R 22607067..22607223 194..38 785 100 Minus
chr3R 27901430 chr3R 22607276..22607313 38..1 190 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:11:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26783607..26783887 475..195 1405 100 Minus
3R 32079331 3R 26783951..26784107 194..38 785 100 Minus
3R 32079331 3R 26784160..26784197 38..1 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26524438..26524718 475..195 1405 100 Minus
3R 31820162 3R 26524782..26524938 194..38 785 100 Minus
3R 31820162 3R 26524991..26525028 38..1 190 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:04:05 has no hits.

MIP09607.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:04:57 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22606725..22607003 195..473 100 <- Minus
chr3R 22607067..22607222 39..194 100 <- Minus
chr3R 22607276..22607313 1..38 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:41:06 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RA 1..303 11..313 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:01:00 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RB 1..150 164..313 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:25:26 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RB 1..150 164..313 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:41:06 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RA 12..484 1..473 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:01:00 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RC 12..484 1..473 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:25:26 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
CG42789-RC 12..484 1..473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:57 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26783951..26784106 39..194 100 <- Minus
3R 26784160..26784197 1..38 100   Minus
3R 26783609..26783887 195..473 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:57 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26783951..26784106 39..194 100 <- Minus
3R 26784160..26784197 1..38 100   Minus
3R 26783609..26783887 195..473 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:57 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26783951..26784106 39..194 100 <- Minus
3R 26784160..26784197 1..38 100   Minus
3R 26783609..26783887 195..473 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:01:00 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22609331..22609609 195..473 100 <- Minus
arm_3R 22609673..22609828 39..194 100 <- Minus
arm_3R 22609882..22609919 1..38 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:15:33 Download gff for MIP09607.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26524440..26524718 195..473 100 <- Minus
3R 26524782..26524937 39..194 100 <- Minus
3R 26524991..26525028 1..38 100   Minus

MIP09607.hyp Sequence

Translation from 0 to 312

> MIP09607.hyp
QSTMEVLWLLLLVSHLSSTQGEGNCTTCAAWVERAVCGYNNRCFTSFKST
CEMEMINCKLPDVYKFKETPYYGHCFRSTIQKCKAYVLLQQLNKKDNSVE
MFA*

MIP09607.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG42789-PC 49 CG42789-PC 1..49 55..103 268 100 Plus
CG42789-PB 49 CG42789-PB 1..49 55..103 268 100 Plus

MIP09607.pep Sequence

Translation from 1 to 312

> MIP09607.pep
QSTMEVLWLLLLVSHLSSTQGEGNCTTCAAWVERAVCGYNNRCFTSFKST
CEMEMINCKLPDVYKFKETPYYGHCFRSTIQKCKAYVLLQQLNKKDNSVE
MFA*

MIP09607.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG42789-PC 49 CG42789-PC 1..49 55..103 268 100 Plus
CG42789-PB 49 CG42789-PB 1..49 55..103 268 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10164-PA 51 GM10164-PA 1..51 53..103 260 92.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18118-PA 51 GD18118-PA 1..51 53..103 252 90.2 Plus