Clone MIP09632 Report

Search the DGRC for MIP09632

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:96
Well:32
Vector:pOT2
Associated Gene/TranscriptAlr-RB
Protein status:MIP09632.pep: gold
Sequenced Size:1319

Clone Sequence Records

MIP09632.complete Sequence

1319 bp assembled on 2009-03-19

GenBank Submission: BT072969.1

> MIP09632.complete
AAAAGTCTTAAAAAAAAATTTTATTGTGTACGTTAAAAATTTGGATCAGA
AAAATCAATAAATATTGCCAATAGCATATGTGTTATTCTATTTTAAACAG
TTCCAAGGCGCAAAATTTATCTGGGGCTGCAGCACTCACAAACGCCAGCT
TCCATCCTATTCACATGTGGCAACCATGCGCATGCTTTTTATGATTTTCA
CAATAGCCGAGCGAAGTTTCAAGATTCTAGAACTACCCACCACACCAACG
CTTCTGCTGCGCCGCCAGTCCCACAACTACGGCTACGACTACATCAGCCC
CACGCACATCGAACTCAGCCGGGAAGCAACTCGCCTGGTAATTCGCCGTC
TGCAGCGCACCGTTCTCCGCCTGATCCGTGACCCGGACTTCATCATGTCT
GCCGAGGCGAATCCCGAGATGGATAAGGAGCACCACGAGTCCCCATTCGC
AGCGAACCGCAAGGCCGGTGCCAGCGGCGCCGGCAAACAGGACTCGAACT
GCCGCACCTGCAACGATTTCAAGTCGTGGTCCAAGCAGCAACGCCTCATC
TCCAACGTGCAGAGCGCCAAGGTGAAGCACATGGCCGCCGCCGAAAAGCT
GACCGTCAACGCCGCCGAAGATCCGCTGCCCCGCGACGACTGCCCGCTGG
ACAAGGTGAGGCTGGGAATTTCCACCTGGGGACTGCTCCACACCATGGCC
GCCTTTTACTCGGACAACCCCACGGACACCGAGAAGCGCGACATGAAGAC
CTTTTTTGAGGTTCTGTCGCGCCTTTACCCCTGCGAGTTTTGCGCCAAGG
ACTTTCGCACCGACCTGGACGTCAACCCCATCAATGTGAACTCCCAAAAG
GAGCTAGCACTGTGGCTGTGCAAGTTCCACAACCGAGTGAACGACAAACT
GGGCAAACCGCTCTTCGATTGCACCAAGGTGAACGAGAGGTGGCGCGACG
GCTGGCTAGACGGCTCCTGCGACTAGGCGCCGCAGCTAACCAGCGCCGAG
AAGCCCCGTCTCCCGCCCGTTGCAGGTTGCCATGTTGACCAGACTTTGTC
CCACATTTTGCTCGGCTGGCCCACAACTACAACCACGGAACACGGGACTC
CTGCTCGGCGGTGTACCGCCGCCAACCCGAAACTGTGCCCTGTTTCTGGC
CAGAGGCCATGCCCACCAGTCGGAACCTGCGTCAGCGTGACATTAAATTG
AGTTATGTTGTAATAGAGCGACACATCGAAGGTCCATTGTTAAATGATTT
GCTGGCTATGAACTCCATTAGAATATACACATTATGTTGAGAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

MIP09632.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-RA 1343 Alr-RA 11..1135 167..1291 5625 100 Plus
CG32528-RA 1824 CG32528-RA 1750..1824 1..75 375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19638400..19638877 814..1291 2390 100 Plus
chrX 22417052 chrX 19637615..19638023 167..575 2045 100 Plus
chrX 22417052 chrX 19638097..19638340 570..813 1220 100 Plus
chrX 22417052 chrX 19637095..19637262 1..168 840 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:11:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19749689..19750166 814..1291 2390 100 Plus
X 23542271 X 19748904..19749312 167..575 2045 100 Plus
X 23542271 X 19749386..19749629 570..813 1220 100 Plus
X 23542271 X 19748384..19748551 1..168 840 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19757787..19758264 814..1291 2390 100 Plus
X 23527363 X 19757002..19757410 167..575 2045 100 Plus
X 23527363 X 19757484..19757727 570..813 1220 100 Plus
X 23527363 X 19756482..19756649 1..168 840 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:04:07 has no hits.

MIP09632.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:04:58 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19637095..19637260 1..166 100 -> Plus
chrX 19637615..19638019 167..571 100 -> Plus
chrX 19638099..19638340 572..813 100 -> Plus
chrX 19638400..19638877 814..1291 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:07:23 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 1..786 191..976 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:41:10 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 1..786 191..976 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:01:05 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RB 1..801 176..976 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:25:29 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RB 1..801 176..976 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-19 09:25:31 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12534-RA 1..1110 182..1291 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:41:10 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RA 1..1110 182..1291 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:01:05 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RB 1..1291 1..1291 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:25:29 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
Alr-RB 71..1361 1..1291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:58 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
X 19748384..19748549 1..166 100 -> Plus
X 19748904..19749308 167..571 100 -> Plus
X 19749388..19749629 572..813 100 -> Plus
X 19749689..19750166 814..1291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:58 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
X 19748384..19748549 1..166 100 -> Plus
X 19748904..19749308 167..571 100 -> Plus
X 19749388..19749629 572..813 100 -> Plus
X 19749689..19750166 814..1291 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:04:58 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
X 19748384..19748549 1..166 100 -> Plus
X 19748904..19749308 167..571 100 -> Plus
X 19749388..19749629 572..813 100 -> Plus
X 19749689..19750166 814..1291 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:01:05 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19642417..19642582 1..166 100 -> Plus
arm_X 19642937..19643341 167..571 100 -> Plus
arm_X 19643421..19643662 572..813 100 -> Plus
arm_X 19643722..19644199 814..1291 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:15:37 Download gff for MIP09632.complete
Subject Subject Range Query Range Percent Splice Strand
X 19757002..19757406 167..571 100 -> Plus
X 19757486..19757727 572..813 100 -> Plus
X 19757787..19758264 814..1291 100   Plus
X 19756482..19756647 1..166 100 -> Plus

MIP09632.pep Sequence

Translation from 175 to 975

> MIP09632.pep
MRMLFMIFTIAERSFKILELPTTPTLLLRRQSHNYGYDYISPTHIELSRE
ATRLVIRRLQRTVLRLIRDPDFIMSAEANPEMDKEHHESPFAANRKAGAS
GAGKQDSNCRTCNDFKSWSKQQRLISNVQSAKVKHMAAAEKLTVNAAEDP
LPRDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRL
YPCEFCAKDFRTDLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCT
KVNERWRDGWLDGSCD*

MIP09632.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20218-PA 275 GF20218-PA 1..275 1..266 1119 76.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19256-PA 265 GG19256-PA 1..265 1..266 1379 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18034-PA 190 GH18034-PA 21..190 94..266 768 79.8 Plus
Dgri\GH17696-PA 288 GH17696-PA 14..176 88..252 615 71.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-PB 266 CG12534-PB 1..266 1..266 1421 100 Plus
Alr-PA 261 CG12534-PA 1..261 6..266 1396 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16104-PA 191 GI16104-PA 28..191 103..266 806 87.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15019-PA 185 GL15019-PA 11..185 84..266 808 83.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11683-PA 185 GA11683-PA 11..185 84..266 808 83.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22993-PA 265 GM22993-PA 1..265 1..266 1396 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17467-PA 192 GD17467-PA 1..192 74..266 1017 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15753-PA 190 GJ15753-PA 12..190 77..266 806 80.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25283-PA 191 GK25283-PA 13..191 87..266 812 83.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15875-PA 267 GE15875-PA 1..267 1..266 1395 97.8 Plus

MIP09632.hyp Sequence

Translation from 175 to 975

> MIP09632.hyp
MRMLFMIFTIAERSFKILELPTTPTLLLRRQSHNYGYDYISPTHIELSRE
ATRLVIRRLQRTVLRLIRDPDFIMSAEANPEMDKEHHESPFAANRKAGAS
GAGKQDSNCRTCNDFKSWSKQQRLISNVQSAKVKHMAAAEKLTVNAAEDP
LPRDDCPLDKVRLGISTWGLLHTMAAFYSDNPTDTEKRDMKTFFEVLSRL
YPCEFCAKDFRTDLDVNPINVNSQKELALWLCKFHNRVNDKLGKPLFDCT
KVNERWRDGWLDGSCD*

MIP09632.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Alr-PB 266 CG12534-PB 1..266 1..266 1421 100 Plus
Alr-PA 261 CG12534-PA 1..261 6..266 1396 100 Plus