Clone MIP10565 Report

Search the DGRC for MIP10565

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:104
Well:65
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG10899-RA
Protein status:MIP10565.pep: gold
Sequenced Size:980

Clone Sequence Records

MIP10565.complete Sequence

980 bp assembled on 2009-05-19

GenBank Submission: BT083463.1

> MIP10565.complete
TTTTTATTTAGTCCGTAGTCTAGTATTGTAAGTCTGTAAGTCTTTTACAT
GTTTCTTGTGGCAAGAAGTTTTGCCCCAATTAACTCGGGGACAAGAAGTC
ATTTTGGATTCAATTATGATAAACAGGGAAGGGATTGGAATGTAAAGTGC
GGTGAAAGACAATCGCCCATTGCACTGTGGTCATGCAATGCCATTACATG
TAATGTACCCAAACTGAAGTTCCTGAATTACCATAAGAGCCTGTGCGATC
CTTTATCCGTGATCAACAATGGGCTAACAGTTCTCATGCGGATACCCAAG
ACCGTCGACGGCAGTCGGCCATCCCTTTGCATCAGTACTGAAGGCCAACA
GGTCTTCGAGGCCGACCAGTTGCACTTTCACTGGGGCTCCGCACTGAGCA
AGGGATCGGAGCACTGCTTGGATGGCAACTATTACGATGGGGAGGTGCAC
ATCGTTCACAAGAATGCCAGTTACAAAAGCAACAAGGAGGCCGGTCTGCA
GCCGAATGGCTTTGCGGTTTTGGCCCTGTTCATAAGGAACCTTGAGGATC
CGAACATCGAGACGCCAGCTATGAACATGATCTGTAAACAGGTATCCAGC
ATAACTAAGTTGGATGATTCGTGTCCTCTGGAGGACAGCATGGCTTTGCA
GGACCTTTTTGCTAGCATAGACAGCCAAAAATACTTCACCTACCAAGGTT
CGCTTACTACTCCTCCCTGTGCCGAGGCAGTCATCTGGTTTGTTTTCCCG
ACTCCTCTCGATGTTCCCAAGGAGCTGTGGAAGCACTTTTGGCAACTGAG
GGACTCTCGTGACCAGCGCGTCCTTAACACCTACAGGGAACTGCAAGATG
GCCATGACCGACCAGTTTATAGAAGTAAAGCAAAATAAGTGTTTTAGCCA
AGTGAATATCATGTAATATGTATTGTCCAAGTCACATAGTGTATTAAAAT
TAGAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP10565.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10899-RA 1012 CG10899-RA 50..1000 2..952 4755 100 Plus
CG10899-RB 998 CG10899-RB 1..528 20..547 2640 100 Plus
CG10899-RB 998 CG10899-RB 581..988 545..952 2040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20680140..20680497 547..190 1790 100 Minus
chr3R 27901430 chr3R 20680557..20680745 190..2 945 100 Minus
chr3R 27901430 chr3R 20679579..20679754 952..777 880 100 Minus
chr3R 27901430 chr3R 20679933..20680087 699..545 775 100 Minus
chr3R 27901430 chr3R 20679803..20679884 777..696 395 98.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:12:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24856954..24857311 547..190 1790 100 Minus
3R 32079331 3R 24857371..24857559 190..2 945 100 Minus
3R 32079331 3R 24856393..24856568 952..777 880 100 Minus
3R 32079331 3R 24856747..24856901 699..545 775 100 Minus
3R 32079331 3R 24856617..24856698 777..696 410 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24597785..24598142 547..190 1790 100 Minus
3R 31820162 3R 24598202..24598390 190..2 945 100 Minus
3R 31820162 3R 24597224..24597399 952..777 880 100 Minus
3R 31820162 3R 24597578..24597732 699..545 775 100 Minus
3R 31820162 3R 24597448..24597529 777..696 410 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:10:08 has no hits.

MIP10565.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:10:55 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20680558..20680745 1..189 99   Minus
chr3R 20679578..20679753 778..953 99 <- Minus
chr3R 20679803..20679882 698..777 98 <- Minus
chr3R 20679935..20680085 547..697 100 <- Minus
chr3R 20680141..20680497 190..546 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:09:32 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
CG10899-RA 1..840 49..888 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:46:15 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
CG10899-RA 1..840 49..888 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:41:25 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
CG10899-RA 1..840 49..888 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:41:51 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
CG10899-RA 1..840 49..888 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-19 18:15:03 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
CG10899-RA 1..933 20..953 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:46:15 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
CG10899-RA 1..951 2..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:41:25 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
CG10899-RA 1..951 2..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:41:51 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
CG10899-RA 1..951 2..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:55 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24856392..24856567 778..953 99 <- Minus
3R 24856617..24856696 698..777 100 <- Minus
3R 24856749..24856899 547..697 100 <- Minus
3R 24856955..24857311 190..546 100 <- Minus
3R 24857372..24857559 1..189 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:55 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24856392..24856567 778..953 99 <- Minus
3R 24856617..24856696 698..777 100 <- Minus
3R 24856749..24856899 547..697 100 <- Minus
3R 24856955..24857311 190..546 100 <- Minus
3R 24857372..24857559 1..189 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:55 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24856392..24856567 778..953 99 <- Minus
3R 24856617..24856696 698..777 100 <- Minus
3R 24856749..24856899 547..697 100 <- Minus
3R 24856955..24857311 190..546 100 <- Minus
3R 24857372..24857559 1..189 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:41:25 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20682114..20682289 778..953 99 <- Minus
arm_3R 20682339..20682418 698..777 100 <- Minus
arm_3R 20682471..20682621 547..697 100 <- Minus
arm_3R 20682677..20683033 190..546 100 <- Minus
arm_3R 20683094..20683281 1..189 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:21:34 Download gff for MIP10565.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24597786..24598142 190..546 100 <- Minus
3R 24598203..24598390 1..189 99   Minus
3R 24597223..24597398 778..953 99 <- Minus
3R 24597448..24597527 698..777 100 <- Minus
3R 24597580..24597730 547..697 100 <- Minus

MIP10565.pep Sequence

Translation from 48 to 887

> MIP10565.pep
MFLVARSFAPINSGTRSHFGFNYDKQGRDWNVKCGERQSPIALWSCNAIT
CNVPKLKFLNYHKSLCDPLSVINNGLTVLMRIPKTVDGSRPSLCISTEGQ
QVFEADQLHFHWGSALSKGSEHCLDGNYYDGEVHIVHKNASYKSNKEAGL
QPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSITKLDDSCPLEDSMAL
QDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQL
RDSRDQRVLNTYRELQDGHDRPVYRSKAK*

MIP10565.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18008-PA 287 GF18008-PA 1..279 1..279 1051 67.7 Plus
Dana\GF17778-PA 303 GF17778-PA 43..297 21..274 511 39.8 Plus
Dana\GF17777-PA 247 GF17777-PA 5..235 48..279 425 36.2 Plus
Dana\GF16571-PA 314 GF16571-PA 18..289 10..277 410 34.1 Plus
Dana\GF22952-PA 311 GF22952-PA 25..284 19..274 407 34.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12312-PA 279 GG12312-PA 1..279 1..279 1346 87.8 Plus
Dere\GG11800-PA 630 GG11800-PA 371..625 21..274 540 42.6 Plus
Dere\GG12140-PA 311 GG12140-PA 25..284 19..274 416 34.8 Plus
Dere\GG12522-PA 303 GG12522-PA 45..287 35..277 408 35.4 Plus
Dere\GG11800-PA 630 GG11800-PA 128..349 41..263 339 33.6 Plus
Dere\GG15564-PA 335 GG15564-PA 28..285 19..276 300 29.8 Plus
Dere\GG11800-PA 630 GG11800-PA 13..143 44..175 227 35.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18013-PA 286 GH18013-PA 27..282 21..275 500 38.1 Plus
Dgri\GH18014-PA 331 GH18014-PA 72..327 21..275 496 38.1 Plus
Dgri\GH17509-PA 297 GH17509-PA 14..289 1..277 441 38 Plus
Dgri\GH22268-PA 258 GH22268-PA 25..254 45..275 431 36.3 Plus
Dgri\GH18011-PA 245 GH18011-PA 2..238 37..274 424 38.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10899-PA 279 CG10899-PA 1..279 1..279 1512 100 Plus
CG10899-PC 200 CG10899-PC 1..200 80..279 1078 100 Plus
CG18673-PC 302 CG18673-PC 43..297 21..274 523 42.6 Plus
CG3669-PB 298 CG3669-PB 10..284 1..274 466 33.5 Plus
CG18672-PC 286 CG18672-PC 26..283 21..277 427 35.6 Plus
CG18672-PB 284 CG18672-PB 26..281 21..277 416 36.4 Plus
CG18672-PD 281 CG18672-PD 26..278 21..277 411 35.6 Plus
CG5379-PB 303 CG5379-PB 45..284 35..274 395 35.4 Plus
CG5379-PA 303 CG5379-PA 45..284 35..274 395 35.4 Plus
caix-PA 311 CG6074-PA 44..284 35..274 392 36.1 Plus
CAH2-PA 335 CG6906-PA 28..285 19..276 300 30.6 Plus
CAH1-PA 270 CG7820-PA 4..220 18..239 285 34.3 Plus
CG11284-PE 250 CG11284-PE 4..236 38..272 276 30.2 Plus
CG11284-PD 250 CG11284-PD 4..236 38..272 276 30.2 Plus
CG11284-PC 250 CG11284-PC 4..236 38..272 276 30.2 Plus
CG11284-PB 250 CG11284-PB 4..236 38..272 276 30.2 Plus
CG11284-PA 250 CG11284-PA 4..236 38..272 276 30.2 Plus
CG3940-PC 304 CG3940-PC 30..269 22..273 275 31.8 Plus
CG3940-PB 304 CG3940-PB 30..269 22..273 275 31.8 Plus
CG3940-PA 304 CG3940-PA 30..269 22..273 275 31.8 Plus
CAH2-PB 253 CG6906-PB 3..203 73..276 245 30.4 Plus
CG9235-PA 332 CG9235-PA 77..327 14..277 202 23.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23614-PA 278 GI23614-PA 1..266 1..274 670 45.6 Plus
Dmoj\GI23612-PA 410 GI23612-PA 49..304 21..273 497 40.9 Plus
Dmoj\GI10376-PA 298 GI10376-PA 14..290 1..278 464 38.9 Plus
Dmoj\GI23275-PA 310 GI23275-PA 24..283 19..274 415 35.6 Plus
Dmoj\GI23611-PA 207 GI23611-PA 1..199 80..279 357 36.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13738-PA 234 GL13738-PA 1..221 53..274 443 39.5 Plus
Dper\GL13739-PA 353 GL13739-PA 47..295 21..266 433 38.4 Plus
Dper\GL26017-PA 288 GL26017-PA 37..278 21..259 388 33.7 Plus
Dper\GL23614-PA 305 GL23614-PA 25..278 19..274 349 31.4 Plus
Dper\GL25159-PA 335 GL25159-PA 13..285 5..276 315 31.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10625-PA 291 GA10625-PA 1..273 1..274 719 50.9 Plus
Dpse\GA27011-PB 304 GA27011-PB 37..291 21..274 495 39.3 Plus
Dpse\GA27012-PA 314 GA27012-PA 47..306 21..277 472 39.1 Plus
Dpse\GA25239-PA 298 GA25239-PA 37..293 21..274 430 35.4 Plus
Dpse\GA18835-PA 297 GA18835-PA 47..289 35..277 422 37.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23454-PA 279 GM23454-PA 1..279 1..279 1478 96.4 Plus
Dsec\GM12933-PA 302 GM12933-PA 43..297 21..274 545 42.6 Plus
Dsec\GM12931-PA 299 GM12931-PA 31..290 21..279 478 35.7 Plus
Dsec\GM12932-PA 266 GM12932-PA 3..262 21..279 441 36.8 Plus
Dsec\GM10133-PA 311 GM10133-PA 25..284 19..274 415 34.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18260-PA 279 GD18260-PA 1..279 1..279 1461 95.3 Plus
Dsim\GD21570-PA 260 GD21570-PA 1..255 21..274 546 42.6 Plus
Dsim\GD21568-PA 299 GD21568-PA 31..290 21..279 485 36.1 Plus
Dsim\GD18095-PA 311 GD18095-PA 25..284 19..274 415 35.2 Plus
Dsim\GD18465-PA 303 GD18465-PA 45..287 35..277 384 35.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23586-PA 272 GJ23586-PA 1..270 1..278 627 42.4 Plus
Dvir\GJ23585-PA 304 GJ23585-PA 43..299 21..274 472 38.3 Plus
Dvir\GJ22838-PA 297 GJ22838-PA 14..289 1..277 471 38.9 Plus
Dvir\GJ23584-PA 246 GJ23584-PA 8..238 48..279 424 37.3 Plus
Dvir\GJ24133-PA 310 GJ24133-PA 24..283 19..274 411 35.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10872-PA 306 GK10872-PA 43..299 21..274 527 41.5 Plus
Dwil\GK12035-PA 312 GK12035-PA 26..285 19..274 428 35.2 Plus
Dwil\GK12982-PA 297 GK12982-PA 30..287 21..275 396 35.6 Plus
Dwil\GK10871-PA 205 GK10871-PA 1..194 80..274 347 35.4 Plus
Dwil\GK13282-PA 300 GK13282-PA 34..273 35..277 328 33.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10767-PA 282 GE10767-PA 1..279 1..279 1343 88.2 Plus
Dyak\GE10930-PA 302 GE10930-PA 43..297 21..274 528 41.4 Plus
Dyak\GE10928-PA 298 GE10928-PA 30..289 21..279 499 37 Plus
Dyak\GE10587-PA 311 GE10587-PA 25..284 19..274 423 35.6 Plus
Dyak\GE10929-PA 195 GE10929-PA 2..190 85..274 287 32.6 Plus

MIP10565.hyp Sequence

Translation from 48 to 887

> MIP10565.hyp
MFLVARSFAPINSGTRSHFGFNYDKQGRDWNVKCGERQSPIALWSCNAIT
CNVPKLKFLNYHKSLCDPLSVINNGLTVLMRIPKTVDGSRPSLCISTEGQ
QVFEADQLHFHWGSALSKGSEHCLDGNYYDGEVHIVHKNASYKSNKEAGL
QPNGFAVLALFIRNLEDPNIETPAMNMICKQVSSITKLDDSCPLEDSMAL
QDLFASIDSQKYFTYQGSLTTPPCAEAVIWFVFPTPLDVPKELWKHFWQL
RDSRDQRVLNTYRELQDGHDRPVYRSKAK*

MIP10565.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10899-PA 279 CG10899-PA 1..279 1..279 1512 100 Plus
CG10899-PC 200 CG10899-PC 1..200 80..279 1078 100 Plus
CG18673-PC 302 CG18673-PC 43..297 21..274 523 42.6 Plus
CG3669-PB 298 CG3669-PB 10..284 1..274 466 33.5 Plus
CG18672-PC 286 CG18672-PC 26..283 21..277 427 35.6 Plus