Clone MIP10907 Report

Search the DGRC for MIP10907

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:109
Well:7
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG34245-RD
Protein status:MIP10907.pep: gold
Sequenced Size:584

Clone Sequence Records

MIP10907.complete Sequence

584 bp assembled on 2009-10-08

GenBank Submission: BT099981.1

> MIP10907.complete
ATTATTTTACACTTTCTTAGGACTTCATTTGTTTGAATTACTTGTCACAA
TTTTGACGACTTAACATTTTGTAATACTGTATGGAATGAAATGAATGAAT
CCACACCAAGTAACTGCAGCACACGAAACACACAAATACCAATTCGAGCG
GTTCTCAGACAGACCAGGGAAAGTTTAACTGAGATCTTTACCAAGTATCG
CCAAAAAGTGGGCAATGGAGCTCTCCTGGCGGTTCAAAGGGTCAAAACTT
CTCAACAATTAAGTCTTATAAAGCCAAGCCTTCGTTGTGTAACCAAACGA
CAGAGTTTCTTTAAACGATATGGATGCGAAGAGGTGGCCACTGTGTGCCT
TTTGGTGGTCATTTTGTTGATGCTCTTGTTTGGACTTTACCTGGCCAGGA
ACTACAATCACGCCTATATCTATGGCTCTGGTGGATGCCTTTCGACGTTT
TTGTGGACATACGATGAATGCCAAATAATTACATAGGCCCAAACGGTTTT
GTTTGTATATGAACTTTATTGATGCCCGATTGGTTGTGGCCAATAAACTG
ATAGCAATTCAAAAAAAAAAAAAAAAAAAAAAAA

MIP10907.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG34245.a 747 CG34245.a 1..561 1..561 2805 100 Plus
CG34245-RB 579 CG34245-RB 125..250 305..430 630 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14884192..14884496 305..1 1525 100 Minus
chr3L 24539361 chr3L 14883814..14884070 560..304 1285 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:12:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14894112..14894416 305..1 1525 100 Minus
3L 28110227 3L 14893733..14893990 561..304 1290 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14887212..14887516 305..1 1525 100 Minus
3L 28103327 3L 14886833..14887090 561..304 1290 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:01:39 has no hits.

MIP10907.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:02:46 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14883814..14884068 306..560 100 <- Minus
chr3L 14884192..14884496 1..305 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:57:04 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RB 118..250 296..430 97   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:41:38 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 1..396 91..486 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:42 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 1..396 91..486 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:13 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 1..396 91..486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-08 16:59:35 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RB 118..250 296..430 97   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:41:38 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 1..560 1..560 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:42 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 1..560 1..560 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:13 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
CG34245-RD 1..560 1..560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:02:46 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14893734..14893988 306..560 100 <- Minus
3L 14894112..14894416 1..305 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:02:46 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14893734..14893988 306..560 100 <- Minus
3L 14894112..14894416 1..305 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:02:46 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14893734..14893988 306..560 100 <- Minus
3L 14894112..14894416 1..305 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:42 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14886834..14887088 306..560 100 <- Minus
arm_3L 14887212..14887516 1..305 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:23:12 Download gff for MIP10907.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14886834..14887088 306..560 100 <- Minus
3L 14887212..14887516 1..305 100   Minus

MIP10907.pep Sequence

Translation from 90 to 485

> MIP10907.pep
MNESTPSNCSTRNTQIPIRAVLRQTRESLTEIFTKYRQKVGNGALLAVQR
VKTSQQLSLIKPSLRCVTKRQSFFKRYGCEEVATVCLLVVILLMLLFGLY
LARNYNHAYIYGSGGCLSTFLWTYDECQIIT*

MIP10907.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13703-PA 131 GG13703-PA 5..131 4..131 404 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG34245-PD 131 CG34245-PD 1..131 1..131 677 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24524-PA 101 GM24524-PA 22..101 47..131 216 71.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12593-PA 150 GD12593-PA 42..150 23..131 443 93.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19998-PA 101 GE19998-PA 27..101 52..131 197 63.7 Plus

MIP10907.hyp Sequence

Translation from 90 to 485

> MIP10907.hyp
MNESTPSNCSTRNTQIPIRAVLRQTRESLTEIFTKYRQKVGNGALLAVQR
VKTSQQLSLIKPSLRCVTKRQSFFKRYGCEEVATVCLLVVILLMLLFGLY
LARNYNHAYIYGSGGCLSTFLWTYDECQIIT*

MIP10907.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG34245-PD 131 CG34245-PD 1..131 1..131 677 100 Plus