Clone MIP10950 Report

Search the DGRC for MIP10950

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:109
Well:50
Vector:pOTB7_DraIII
Associated Gene/TranscriptSfp24Ba-RA
Protein status:MIP10950.pep: gold
Sequenced Size:548

Clone Sequence Records

MIP10950.complete Sequence

548 bp assembled on 2009-10-08

GenBank Submission: BT099982.1

> MIP10950.complete
AGTCGTTTGAAAGGTGAGCAATGGAGACGAAGTTCGTGGTCATAACTTTT
CTAATAAGCTACGTACTTGCCCAATCGAATGCCGATTGTGGCAATAAGCC
AATTGTGGATGGAAATTGCGATCAGATAATCAAAGGATTTACTTTTGCAA
CCGAAGAAAACCGATGCAAAAAGTTTAGAGCAAAGGGTTGCACAGTGGGC
GGAAATTACTTTCGAGCCAAAGATGAGTGCGAGCTCAAATGCAAGGGTTA
TATAAATTGGGGTATCGAAAGCTTCGGAAACGGAGATTGGGAAGAAAGTG
AAATTGAGGACTATTGGAATAATGGTTCGGAAGAAAGCGAAGTCGAAAGC
ATCTCGAATAGAGGATCGAAAAAACGAACTCTCTAAAAGAAGCTTGAACT
GAGATAACATCGATGAATACTTGACAGCGGGGATTCAGTTTATTAAAATG
GTAAATGGTAACATTAAAAATTTTATTTGGCTACACTGTAAGCTACCTAA
TAAATTATACAGTTTTCTATACAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP10950.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp24Ba-RA 563 Sfp24Ba-RA 25..550 1..526 2615 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 3667483..3667923 521..81 2205 100 Minus
chr2L 23010047 chr2L 3667976..3668056 81..1 405 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:12:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3667973..3668418 526..81 2215 99.8 Minus
2L 23513712 2L 3668471..3668551 81..1 405 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3667973..3668418 526..81 2215 99.7 Minus
2L 23513712 2L 3668471..3668551 81..1 405 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:59:23 has no hits.

MIP10950.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:00:19 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 3667482..3667922 82..522 99 <- Minus
chr2L 3667976..3668056 1..81 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:57:05 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp24Ba-RA 1..366 21..386 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:41:46 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp24Ba-RA 1..366 21..386 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:29 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp24Ba-RA 1..366 21..386 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:18:49 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp24Ba-RA 1..366 21..386 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-08 16:59:36 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp24Ba-RA 1..483 1..483 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:41:46 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp24Ba-RA 1..521 1..522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:29 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp24Ba-RA 1..521 1..522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:18:49 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp24Ba-RA 1..521 1..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:19 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3667977..3668417 82..522 99 <- Minus
2L 3668471..3668551 1..81 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:19 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3667977..3668417 82..522 99 <- Minus
2L 3668471..3668551 1..81 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:00:19 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3667977..3668417 82..522 99 <- Minus
2L 3668471..3668551 1..81 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:29 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3667977..3668417 82..522 99 <- Minus
arm_2L 3668471..3668551 1..81 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:23:18 Download gff for MIP10950.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3667977..3668417 82..522 99 <- Minus
2L 3668471..3668551 1..81 100   Minus

MIP10950.pep Sequence

Translation from 20 to 385

> MIP10950.pep
METKFVVITFLISYVLAQSNADCGNKPIVDGNCDQIIKGFTFATEENRCK
KFRAKGCTVGGNYFRAKDECELKCKGYINWGIESFGNGDWEESEIEDYWN
NGSEESEVESISNRGSKKRTL*

MIP10950.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14658-PA 110 GF14658-PA 9..79 7..77 159 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp24Ba-PA 121 CG42461-PA 1..121 1..121 659 100 Plus
Sfp24Bc-PA 100 CG42602-PA 4..76 5..74 178 45.2 Plus
Sfp24Bd-PB 111 CG42463-PB 8..77 6..75 174 45.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22739-PA 111 GD22739-PA 1..77 3..75 180 49.4 Plus

MIP10950.hyp Sequence

Translation from 20 to 385

> MIP10950.hyp
METKFVVITFLISYVLAQSNADCGNKPIVDGNCDQIIKGFTFATEENRCK
KFRAKGCTVGGNYFRAKDECELKCKGYINWGIESFGNGDWEESEIEDYWN
NGSEESEVESISNRGSKKRTL*

MIP10950.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp24Ba-PA 121 CG42461-PA 1..121 1..121 659 100 Plus
Sfp24Bc-PA 100 CG42602-PA 4..76 5..74 178 45.2 Plus
CG42463-PB 111 CG42463-PB 8..77 6..75 174 45.7 Plus