Clone MIP11312 Report

Search the DGRC for MIP11312

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:113
Well:12
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG14105-RA
Protein status:MIP11312.pep: gold
Sequenced Size:703

Clone Sequence Records

MIP11312.complete Sequence

703 bp assembled on 2009-06-25

GenBank Submission: BT088862.1

> MIP11312.complete
AGTTTGATCGAACTTATAAAGTAAACAACATCGTAGCATGCCGCAGGCCA
ATCTTACGTTAAGTCCCCATGATCAGCAGGTGCTCGATTCCATTTTCAAT
CCCCTCGAGCTTAGCAGCCTACAGACAAATAACTTAATTCCCGCTGAATC
CGACCTGAAGGATGAGGAGCCGGATACCCAGGCTATCAAAGCTTCCAGGG
AACTGGAGCTAAAAGCCATCGCCTTATCCGAAAGCGGGGAGCTTGATGGA
GCACTGGAACTATTTCAACAATCATTAAATCTAGCCCAGAGGGCTTCCGT
GCTTAATAATCGGGCACAAACTTTACGCCTAGCCAAACGTGATGAGGAGG
CCCTCGATGACCTAAACAAAGCCCTAGAACTGGCCAATGATCAGCAGACC
CGCACCAAGTGCCATGCCCATTGTCAGCGAGGTGTCCTTTATCGTAAACT
GGATAACTTGGAGGCGGCTCGTGCCGATTTCGAGGCAGCAGCCCAGTTGG
GCAGTAAATTCGCCAGAGAACAGTTGGTGGAAATCAATCCCTATGCAGCT
CTCTGCAATCAAATGCTCCGTCAGGCATTCGATCAACTCAAGTAGCAAGT
TATGCAGTTGAATTTTCATGAGATTATGAGTTACTGGATTGTTAATAAAT
AAAAAAATAAAATGAGAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

MIP11312.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14105-RA 811 CG14105-RA 97..770 1..674 3355 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13416574..13416920 347..1 1735 100 Minus
chr3L 24539361 chr3L 13416336..13416512 523..347 885 100 Minus
chr3L 24539361 chr3L 13416134..13416283 670..521 750 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:12:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13426327..13426673 347..1 1735 100 Minus
3L 28110227 3L 13426089..13426265 523..347 885 100 Minus
3L 28110227 3L 13425883..13426036 674..521 755 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13419427..13419773 347..1 1735 100 Minus
3L 28103327 3L 13419189..13419365 523..347 885 100 Minus
3L 28103327 3L 13418983..13419136 674..521 755 99.3 Minus
Blast to na_te.dros performed on 2019-03-16 18:23:54 has no hits.

MIP11312.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:24:43 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13416161..13416280 524..643 98 <- Minus
chr3L 13416336..13416511 348..523 100 <- Minus
chr3L 13416574..13416920 1..347 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:11:02 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 1..558 38..595 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:49:00 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 1..558 38..595 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:19:19 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 1..558 38..595 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:13 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 1..558 38..595 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-06-25 17:31:31 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 1..558 38..595 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:49:00 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 1..643 1..643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:19 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 1..643 1..643 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:13 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
CG14105-RA 1..643 1..643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:24:43 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13425914..13426033 524..643 100 <- Minus
3L 13426089..13426264 348..523 100 <- Minus
3L 13426327..13426673 1..347 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:24:43 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13425914..13426033 524..643 100 <- Minus
3L 13426089..13426264 348..523 100 <- Minus
3L 13426327..13426673 1..347 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:24:43 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13425914..13426033 524..643 100 <- Minus
3L 13426089..13426264 348..523 100 <- Minus
3L 13426327..13426673 1..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:19 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13419014..13419133 524..643 100 <- Minus
arm_3L 13419189..13419364 348..523 100 <- Minus
arm_3L 13419427..13419773 1..347 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:24:40 Download gff for MIP11312.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13419427..13419773 1..347 100   Minus
3L 13419014..13419133 524..643 100 <- Minus
3L 13419189..13419364 348..523 100 <- Minus

MIP11312.pep Sequence

Translation from 37 to 594

> MIP11312.pep
MPQANLTLSPHDQQVLDSIFNPLELSSLQTNNLIPAESDLKDEEPDTQAI
KASRELELKAIALSESGELDGALELFQQSLNLAQRASVLNNRAQTLRLAK
RDEEALDDLNKALELANDQQTRTKCHAHCQRGVLYRKLDNLEAARADFEA
AAQLGSKFAREQLVEINPYAALCNQMLRQAFDQLK*

MIP11312.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10410-PA 188 GF10410-PA 1..188 1..185 718 73.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13769-PA 185 GG13769-PA 1..185 1..185 834 94.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16733-PA 186 GH16733-PA 1..186 1..185 696 74.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14105-PA 185 CG14105-PA 1..185 1..185 920 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13459-PA 186 GI13459-PA 1..186 1..185 642 73.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15693-PA 156 GL15693-PA 1..155 1..155 544 67.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12762-PA 185 GA12762-PA 1..185 1..185 752 77.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24593-PA 169 GM24593-PA 1..169 1..185 741 87 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12661-PA 101 GD12661-PA 1..91 1..91 428 94.5 Plus
Dsim\GD12662-PA 85 GD12662-PA 5..85 105..185 410 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11822-PA 186 GJ11822-PA 1..186 1..185 664 76.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12448-PA 186 GK12448-PA 1..186 1..185 634 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20064-PA 185 GE20064-PA 1..185 1..185 831 93.5 Plus

MIP11312.hyp Sequence

Translation from 37 to 594

> MIP11312.hyp
MPQANLTLSPHDQQVLDSIFNPLELSSLQTNNLIPAESDLKDEEPDTQAI
KASRELELKAIALSESGELDGALELFQQSLNLAQRASVLNNRAQTLRLAK
RDEEALDDLNKALELANDQQTRTKCHAHCQRGVLYRKLDNLEAARADFEA
AAQLGSKFAREQLVEINPYAALCNQMLRQAFDQLK*

MIP11312.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14105-PA 185 CG14105-PA 1..185 1..185 920 100 Plus