Clone MIP12418 Report

Search the DGRC for MIP12418

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:124
Well:18
Vector:pOTB7_DraIII
Associated Gene/TranscriptCG42700-RC
Protein status:MIP12418.pep: gold
Sequenced Size:2188

Clone Sequence Records

MIP12418.complete Sequence

2188 bp assembled on 2009-07-13

GenBank Submission: BT088920.1

> MIP12418.complete
AGTCGCCAGCAGGACATCGAGCAGTGCAAGTCGCGTGGTCGCGCTTTTCC
GATAACTCGCCTGTGGTTGTTGCTCGTGTGACTCTGACTCTGACTGCTGC
TGCTGCTGCTGCTGCAGTGGCACGTGAAGTTCTGTGTGGACTGCCTAAAG
TTTCGATTCGTCGTCGCCTGCGTGTCCTTGCCGCATCCTTAGCCTTGCTC
ACGGTCGCCCGCCCGAGAGCCAATTGAATGCAGTTGCCGTGGTGTGCTGT
GGATGTTAGAAGGGAATAGAAGCCAGCATAACCCCGAGACATTTGCAATC
CGTGCATTAGCATTAGCATAAAGTGCCTGCCTGATATATTGACGCACAAT
CGCCGGATAACGAGAAATGCCATAAGCCCCGGAAAAGCAGCAAGCCAACA
AACCAGCAACCAAGGCTGCAGGTGCACCAGCGCCAGTAGCAGCGGAAGTG
CGCCTGCCAGACGACAAAAAGAAAATGCATTTAGTTTTCCAGTAAAGTGA
AACGCAGCAGCAGAGATGAGCGAACGGGGCAGCGGGGGAGCGGTGACGGG
GGGTCGGCATGCTCGCGTTAGTCCAACGCCAGGACGTGGCAGCAAGATTG
CGTATACGCCGTGTCCGCGCTCCGAACCGCCGCAGGATCTGGCGCTTGCC
GTTCCGCCGCCGCCGCGCAATTGCCTGGCCATCCCGATGTCCTCACTGCA
AACGGCCAATGGACCCGGCACAAAAGTGAACTTTGGTGGCGGCGCCAACT
CGGGAGTCACACGAGCGGAACCAATCTCATTGGCCACCCTGGATCGCGAC
TGCTTCATCATTCCCGTGCACAGTGTGGACCGCTTCCTGCCAGCTGGCAT
TCCTCTGCCCGCCTTAAGTGCCGATGGTAAGGCCACAAGCCCTCTAAGTG
TCTTGGAAGTCTCCGATCCGAAGCTGTGCATTCTGGTGCATTTGATGAGT
CCCCTGGAGGCCATCGATCCGGTAATGGAGTCGCCACTAGCGCATCCGCT
GCTCAAGCAGCGCTCCATTGCCGCCGAATTGGTGACCGAAGTGCAGCAGG
CCAACACGGCAGTGGGCGGAATGCTGCTGGCCAACATGGAGAAGAGCTCT
GAGTTCCCCTTCATCTCGTACTACCTGATCAATACGCTGCAAACGGATCC
TTCCAGCTTCTATGCTGGCCTGCGCGTCTCCTCGCTGTCCAAGTTTGAGC
CAAAGGCCCTCAAATACACTGCCGCCCACACACTGGATCTGTATAGCGAG
GTGGCTGCCATTTGCCGGCCGCCGTTGGTTTTGCCCTCCAACGAGGTGGG
CAGCTTCAAGAAGTCGCAGACCGCGGCCACCGGCTACATTATTAGCGTGT
TCAAGGTTTTCGAGGGCGACGATGGCGAACGATTCGAAAAGAACTGGCTC
TACTGGACCGGAGCACGGATGTTGTACAGGTACCTGCCACGTGCCGCGGG
CCTGAGGCGCATCGCCCTGCACAAGAGCACCTCGCAGAAGGGCGACAAGA
TGTATCTGCTGGTTTGCGAGTGCGCCGAGCTGCTGAAGGACATCTCGCTG
GCCGCCTTCCTGATTCCGGCGCTGCGAGCTCGGCTGTGCGGATACACCGG
ACTCTATCGACCAATACAGGCCTTCTAGTCCAGAGCGCTGGAGTCGCGTA
TTTTTCTATTTGTATCTGTATATATAGTGGATCTGGAGTATGGAGTAGTA
GTCTATGGATAAACTAATGCGAAACAAACACTTGAATGTGAAGGAAACTG
CACCTGTTACGTGATTCTAATTCGATATTAACTAGGCCTATACAAATTTT
TCAAATCTCTCTAGTAAAAGTCGGCAATATCAGCGCTGCGAAAGTGCAGG
GGGTTAATGTGCTGGTTAACCCTCGATTAGGCATCTAACTTAATTAGTAG
ACAATATACTCAAGGTAACTTCATATCGTGTGCTAGATTTTTCTATAAAT
CATATAGAGGCCAGCCCAATTAATAGGACCATATCTAGTGTGAGTTGGTA
GCAAAGAACTTCCATTTTAGCCACAGTGGGAACTATATATGTATACCGAT
ATATCATAGTAGTAATTCACATATTTGAACGCTGAATTTTGCGCTGAAAT
GTAGGCTATGAAATCTGCAAACCAAAAGTCAATTCTTAGCATTAAAAACC
TAAATGATTGTCAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP12418.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13165.a 2264 CG13165.a 1..2164 1..2164 10805 99.9 Plus
CG13165.b 2440 CG13165.b 900..2340 724..2164 7190 99.9 Plus
CG34233-RA 633 CG34233-RA 1..211 516..726 1055 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8184742..8185479 1427..2162 3580 99.3 Plus
chr2R 21145070 chr2R 8166991..8167723 1..726 3395 98.5 Plus
chr2R 21145070 chr2R 8183793..8184042 855..1104 1205 98.8 Plus
chr2R 21145070 chr2R 8184286..8184429 1214..1357 720 100 Plus
chr2R 21145070 chr2R 8183566..8183695 725..854 650 100 Plus
chr2R 21145070 chr2R 8184101..8184215 1099..1213 575 100 Plus
chr2R 21145070 chr2R 8184494..8184573 1354..1433 400 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:13:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12297512..12298249 1427..2164 3675 99.9 Plus
2R 25286936 2R 12279773..12280498 1..726 3630 100 Plus
2R 25286936 2R 12296563..12296812 855..1104 1235 99.6 Plus
2R 25286936 2R 12297056..12297199 1214..1357 720 100 Plus
2R 25286936 2R 12296336..12296465 725..854 650 100 Plus
2R 25286936 2R 12296871..12296985 1099..1213 575 100 Plus
2R 25286936 2R 12297264..12297343 1354..1433 400 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12298711..12299448 1427..2164 3675 99.8 Plus
2R 25260384 2R 12280972..12281697 1..726 3630 100 Plus
2R 25260384 2R 12297762..12298011 855..1104 1235 99.6 Plus
2R 25260384 2R 12298255..12298398 1214..1357 720 100 Plus
2R 25260384 2R 12297535..12297664 725..854 650 100 Plus
2R 25260384 2R 12298070..12298184 1099..1213 575 100 Plus
2R 25260384 2R 12298463..12298542 1354..1433 400 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:26:44 has no hits.

MIP12418.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:27:52 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8166991..8167723 1..726 95 -> Plus
chr2R 8183568..8183695 727..854 100 -> Plus
chr2R 8183793..8184036 855..1098 99 -> Plus
chr2R 8184101..8184215 1099..1213 100 -> Plus
chr2R 8184286..8184427 1214..1355 100 -> Plus
chr2R 8184496..8184569 1356..1429 100 -> Plus
chr2R 8184745..8185479 1430..2162 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:56:13 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
CG13165-RA 595..1503 716..1628 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:52:55 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
CG42700-RC 1..1113 516..1628 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:24 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
CG42700-RC 1..1113 516..1628 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:34 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
CG42700-RC 1..1113 516..1628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:13 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
CG13165-RA 595..1503 716..1628 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:52:55 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
CG42700-RC 1..2162 1..2162 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:24 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
CG42700-RC 1..2162 1..2162 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:34 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
CG42700-RC 3..2164 1..2162 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:27:52 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12279773..12280498 1..726 100 -> Plus
2R 12296338..12296465 727..854 100 -> Plus
2R 12296563..12296806 855..1098 100 -> Plus
2R 12296871..12296985 1099..1213 100 -> Plus
2R 12297056..12297197 1214..1355 100 -> Plus
2R 12297266..12297339 1356..1429 100 -> Plus
2R 12297515..12298247 1430..2162 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:27:52 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12279773..12280498 1..726 100 -> Plus
2R 12296338..12296465 727..854 100 -> Plus
2R 12296563..12296806 855..1098 100 -> Plus
2R 12296871..12296985 1099..1213 100 -> Plus
2R 12297056..12297197 1214..1355 100 -> Plus
2R 12297266..12297339 1356..1429 100 -> Plus
2R 12297515..12298247 1430..2162 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:27:52 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12279773..12280498 1..726 100 -> Plus
2R 12296338..12296465 727..854 100 -> Plus
2R 12296563..12296806 855..1098 100 -> Plus
2R 12296871..12296985 1099..1213 100 -> Plus
2R 12297056..12297197 1214..1355 100 -> Plus
2R 12297266..12297339 1356..1429 100 -> Plus
2R 12297515..12298247 1430..2162 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:24 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8167278..8168003 1..726 100 -> Plus
arm_2R 8183843..8183970 727..854 100 -> Plus
arm_2R 8184068..8184311 855..1098 100 -> Plus
arm_2R 8184376..8184490 1099..1213 100 -> Plus
arm_2R 8184561..8184702 1214..1355 100 -> Plus
arm_2R 8184771..8184844 1356..1429 100 -> Plus
arm_2R 8185020..8185752 1430..2162 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:43:46 Download gff for MIP12418.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12298465..12298538 1356..1429 100 -> Plus
2R 12280972..12281697 1..726 100 -> Plus
2R 12297537..12297664 727..854 100 -> Plus
2R 12297762..12298005 855..1098 100 -> Plus
2R 12298070..12298184 1099..1213 100 -> Plus
2R 12298255..12298396 1214..1355 100 -> Plus
2R 12298714..12299446 1430..2162 99   Plus

MIP12418.hyp Sequence

Translation from 515 to 1627

> MIP12418.hyp
MSERGSGGAVTGGRHARVSPTPGRGSKIAYTPCPRSEPPQDLALAVPPPP
RNCLAIPMSSLQTANGPGTKVNFGGGANSGVTRAEPISLATLDRDCFIIP
VHSVDRFLPAGIPLPALSADGKATSPLSVLEVSDPKLCILVHLMSPLEAI
DPVMESPLAHPLLKQRSIAAELVTEVQQANTAVGGMLLANMEKSSEFPFI
SYYLINTLQTDPSSFYAGLRVSSLSKFEPKALKYTAAHTLDLYSEVAAIC
RPPLVLPSNEVGSFKKSQTAATGYIISVFKVFEGDDGERFEKNWLYWTGA
RMLYRYLPRAAGLRRIALHKSTSQKGDKMYLLVCECAELLKDISLAAFLI
PALRARLCGYTGLYRPIQAF*

MIP12418.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42700-PJ 370 CG42700-PJ 1..370 1..370 1909 100 Plus
CG42700-PH 370 CG42700-PH 1..370 1..370 1909 100 Plus
CG42700-PC 370 CG42700-PC 1..370 1..370 1909 100 Plus
CG42700-PF 364 CG42700-PF 56..364 65..370 1535 98.1 Plus
CG42700-PE 361 CG42700-PE 33..361 49..370 1531 93.3 Plus

MIP12418.pep Sequence

Translation from 515 to 1627

> MIP12418.pep
MSERGSGGAVTGGRHARVSPTPGRGSKIAYTPCPRSEPPQDLALAVPPPP
RNCLAIPMSSLQTANGPGTKVNFGGGANSGVTRAEPISLATLDRDCFIIP
VHSVDRFLPAGIPLPALSADGKATSPLSVLEVSDPKLCILVHLMSPLEAI
DPVMESPLAHPLLKQRSIAAELVTEVQQANTAVGGMLLANMEKSSEFPFI
SYYLINTLQTDPSSFYAGLRVSSLSKFEPKALKYTAAHTLDLYSEVAAIC
RPPLVLPSNEVGSFKKSQTAATGYIISVFKVFEGDDGERFEKNWLYWTGA
RMLYRYLPRAAGLRRIALHKSTSQKGDKMYLLVCECAELLKDISLAAFLI
PALRARLCGYTGLYRPIQAF*

MIP12418.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12838-PA 500 GF12838-PA 200..500 70..370 1566 98.3 Plus
Dana\GF12836-PA 152 GF12836-PA 1..72 1..71 349 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20269-PA 500 GG20269-PA 200..500 70..370 1598 99.7 Plus
Dere\GG20268-PA 144 GG20268-PA 1..70 1..70 371 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22803-PA 473 GH22803-PA 176..473 72..370 1497 94 Plus
Dgri\GH22801-PA 69 GH22801-PA 3..66 2..70 248 78.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG42700-PJ 370 CG42700-PJ 1..370 1..370 1909 100 Plus
CG42700-PH 370 CG42700-PH 1..370 1..370 1909 100 Plus
CG42700-PC 370 CG42700-PC 1..370 1..370 1909 100 Plus
CG42700-PI 509 CG42700-PI 200..509 61..370 1535 97.4 Plus
CG42700-PG 415 CG42700-PG 111..415 63..370 1535 98.1 Plus
CG42700-PF 364 CG42700-PF 56..364 65..370 1535 98.1 Plus
CG42700-PD 500 CG13165-PA 191..500 61..370 1535 97.4 Plus
CG42700-PE 361 CG42700-PE 33..361 49..370 1531 93.3 Plus
CG42700-PI 509 CG42700-PI 1..70 1..70 376 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20598-PA 636 GI20598-PA 188..423 72..307 1176 92.8 Plus
Dmoj\GI20598-PA 636 GI20598-PA 574..636 308..370 329 98.4 Plus
Dmoj\GI20595-PA 83 GI20595-PA 7..65 10..70 259 83.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10817-PA 446 GL10817-PA 117..446 63..370 1484 86.5 Plus
Dper\GL10815-PA 82 GL10815-PA 1..70 1..70 327 91.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12091-PA 483 GA12091-PA 183..483 70..370 1524 95 Plus
Dpse\GA24500-PA 166 GA24500-PA 1..70 1..70 341 92.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21354-PA 506 GM21354-PA 206..506 70..370 1594 99.3 Plus
Dsec\GM21352-PA 109 GM21352-PA 1..73 1..73 369 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10851-PA 503 GD10851-PA 203..503 70..370 1592 99 Plus
Dsim\GD10850-PA 150 GD10850-PA 1..70 1..70 371 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20782-PA 480 GJ20782-PA 191..480 81..370 1477 95.5 Plus
Dvir\GJ20780-PA 75 GJ20780-PA 13..70 14..71 251 82.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22185-PA 488 GK22185-PA 188..488 70..370 1545 96.3 Plus
Dwil\GK22184-PA 80 GK22184-PA 23..79 14..70 227 82.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12427-PA 498 GE12427-PA 198..498 70..370 1597 99.7 Plus
Dyak\GE12426-PA 71 GE12426-PA 1..70 1..70 363 100 Plus