Clone MIP13411 Report

Search the DGRC for MIP13411

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:134
Well:11
Vector:pOT2
Associated Gene/TranscriptCG15914-RA
Protein status:MIP13411.pep: gold
Sequenced Size:1419

Clone Sequence Records

MIP13411.complete Sequence

1419 bp assembled on 2009-08-20

GenBank Submission: BT099639.1

> MIP13411.complete
ACCGTCTATCATGTCGTGCGCAAAGCCGCATATTTTGATTATTGAACCGT
TTTACGGGGGCAGTCACAAACAGCTGATCGGCGCACTGATCGAGGGTCTC
AACCATGGCGACAGCGAGATATTCAGCCTTCCCGCCAAGAAATGGCACTG
GCGAGCACGCACCTCTGCCCTCCACTTCGCCCAGCTGATTCCGCGCGATC
ACGCATTCCGGGTGCTTTTCGCCAGCTCCGTGCTCAGCCTGGCCGAGCTG
ATTGGTCTGCGTCCGGATCTGGCCGCTTGCCGGAAGATCGTCTACTTCCA
CGAGAACCAGCTGATCTATCCGGTGCGCGAGGTGAAGCAGCGCGATTGTC
AATACGGTTTCAATGAGATACTCTCCTGTCTTGCCGCAGACATGGTGCTC
TTCAATTCCCAATTCAACTGCAACTCGTTTTTGGATAATGTTCAGCCCTT
TCTGAATATGCAGCCAGACTTTAAAATCAAGCATATTCGCGAGCAAATCG
AGAAGAAATGCCAAGTGCTGTACTTTCCCGTCAATTTCGAACGGTTTCCC
ATTCGGAAGGAGTGCGTAAAGGGGGAGACTGCTGAGGATCTGGATGAGAA
GTGCATCCATCTTATTTGGCCACATCGCTGGGAGCACGATAAGAATCCCA
AACTACTGGTGGATACGCTCTGTCAGCTCCATGAGCGACAAGTGGACTTC
AAGGTGACTATTTGTGGCGAGAGTTACCAGGAGATACCGGAGGAATTCGA
GCATATACAGGAGAAACTGGGCAGCAAGCTGGTGAACTTTGGCCATCTGG
AGCGTGAAGAGTACTTGAAGACCCTGCTGACTGGGGACATTGTGATATCA
ACTGCCGACCATGAGTTTTTTGGAGTAGCAATGCTGGAGGCCGCTTTCTG
CGGCTGTTATCCCATTGCGCCCAACAAATTGGTCTACCCGGAAATCTACC
CAAAGGAAAACCTCTACAACACCTCCAATGCGCTGACGAAGAAGCTCTAC
AACTTTTGTAGAATGCCGAGGGTCTTTCGCAAGCAGCGCGATCAATTCTT
TGAGAACTTTAATTTCGATCGTTTTTCGGCGAAAGAACTAGTGCCAAAAT
ATCTGGACATATTCAATAAACATATTGCAGACGAACAAAGTTAGAAATCG
AAGGTTTGGCAAATGTCTATCAAAATATTCTCTGTAATATAATAGATATA
TTTTTGAATAAATATATCTCTCTTCTGTAACCTACAAAGCCAAAAAAAAA
CGATATATATATGTAAGTCCTTTGTGTTAAAACACGCTTCATTCACTTTA
AGCATTTATTTATTTATGAAATATCCGAAAAAAATGGGATACAATTTAAG
GTGGATGTAACCAATAATGCCATAAATGTAGCACAATAAATTCTATTTCG
AAAAAAAAAAAAAAAAAAA

MIP13411.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15914-RA 1422 CG15914-RA 16..1419 1..1404 7020 100 Plus
Myb-RB 2786 Myb-RB 2642..2786 1404..1260 725 100 Minus
Myb.c 2807 Myb.c 2663..2807 1404..1260 725 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15743790..15744812 378..1400 5100 99.9 Plus
chrX 22417052 chrX 15743454..15743737 95..378 1420 100 Plus
chrX 22417052 chrX 15743285..15743381 1..97 485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:14:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15853941..15854967 378..1404 5135 100 Plus
X 23542271 X 15853605..15853888 95..378 1420 100 Plus
X 23542271 X 15853436..15853532 1..97 485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15862039..15863065 378..1404 5135 100 Plus
X 23527363 X 15861703..15861986 95..378 1420 100 Plus
X 23527363 X 15861534..15861630 1..97 485 100 Plus
Blast to na_te.dros performed 2019-03-15 23:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 119..167 1224..1176 119 71.4 Minus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3457..3534 1138..1218 119 63 Plus

MIP13411.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:08:04 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15743285..15743379 1..95 100 -> Plus
chrX 15743455..15743737 96..378 100 -> Plus
chrX 15743791..15744812 379..1400 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:14:44 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG15914-RA 1..1134 11..1144 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:51:28 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG15914-RA 1..1134 11..1144 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:28:05 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG15914-RA 1..1134 11..1144 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:37 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG15914-RA 1..1134 11..1144 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-20 09:45:50 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG15914-RA 1..1134 11..1144 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:51:28 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG15914-RA 16..1415 1..1400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:28:05 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG15914-RA 16..1415 1..1400 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:37 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
CG15914-RA 16..1415 1..1400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:04 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
X 15853436..15853530 1..95 100 -> Plus
X 15853606..15853888 96..378 100 -> Plus
X 15853942..15854963 379..1400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:04 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
X 15853436..15853530 1..95 100 -> Plus
X 15853606..15853888 96..378 100 -> Plus
X 15853942..15854963 379..1400 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:04 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
X 15853436..15853530 1..95 100 -> Plus
X 15853606..15853888 96..378 100 -> Plus
X 15853942..15854963 379..1400 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:28:05 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15747469..15747563 1..95 100 -> Plus
arm_X 15747639..15747921 96..378 100 -> Plus
arm_X 15747975..15748996 379..1400 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:27:33 Download gff for MIP13411.complete
Subject Subject Range Query Range Percent Splice Strand
X 15861704..15861986 96..378 100 -> Plus
X 15862040..15863061 379..1400 100   Plus
X 15861534..15861628 1..95 100 -> Plus

MIP13411.hyp Sequence

Translation from 0 to 1143

> MIP13411.hyp
PSIMSCAKPHILIIEPFYGGSHKQLIGALIEGLNHGDSEIFSLPAKKWHW
RARTSALHFAQLIPRDHAFRVLFASSVLSLAELIGLRPDLAACRKIVYFH
ENQLIYPVREVKQRDCQYGFNEILSCLAADMVLFNSQFNCNSFLDNVQPF
LNMQPDFKIKHIREQIEKKCQVLYFPVNFERFPIRKECVKGETAEDLDEK
CIHLIWPHRWEHDKNPKLLVDTLCQLHERQVDFKVTICGESYQEIPEEFE
HIQEKLGSKLVNFGHLEREEYLKTLLTGDIVISTADHEFFGVAMLEAAFC
GCYPIAPNKLVYPEIYPKENLYNTSNALTKKLYNFCRMPRVFRKQRDQFF
ENFNFDRFSAKELVPKYLDIFNKHIADEQS*

MIP13411.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15914-PA 377 CG15914-PA 1..377 4..380 2030 100 Plus

MIP13411.pep Sequence

Translation from 1 to 1143

> MIP13411.pep
PSIMSCAKPHILIIEPFYGGSHKQLIGALIEGLNHGDSEIFSLPAKKWHW
RARTSALHFAQLIPRDHAFRVLFASSVLSLAELIGLRPDLAACRKIVYFH
ENQLIYPVREVKQRDCQYGFNEILSCLAADMVLFNSQFNCNSFLDNVQPF
LNMQPDFKIKHIREQIEKKCQVLYFPVNFERFPIRKECVKGETAEDLDEK
CIHLIWPHRWEHDKNPKLLVDTLCQLHERQVDFKVTICGESYQEIPEEFE
HIQEKLGSKLVNFGHLEREEYLKTLLTGDIVISTADHEFFGVAMLEAAFC
GCYPIAPNKLVYPEIYPKENLYNTSNALTKKLYNFCRMPRVFRKQRDQFF
ENFNFDRFSAKELVPKYLDIFNKHIADEQS*

MIP13411.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13014-PA 310 GF13014-PA 1..308 4..328 1207 68.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17922-PA 377 GG17922-PA 1..377 4..380 1850 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12195-PA 369 GH12195-PA 3..363 7..369 1488 74.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15914-PA 377 CG15914-PA 1..377 4..380 2030 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10923-PA 371 GI10923-PA 1..365 4..369 1505 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18053-PA 373 GL18053-PA 1..369 4..369 1448 72.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23136-PA 243 GA23136-PA 68..239 198..369 680 71.5 Plus
Dpse\GA23136-PA 243 GA23136-PA 1..67 4..70 264 71.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22590-PA 377 GM22590-PA 1..377 4..380 1963 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24681-PA 377 GD24681-PA 1..377 4..380 1959 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18566-PA 369 GJ18566-PA 3..363 7..369 1494 74.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25818-PA 377 GK25818-PA 3..373 2..369 1514 73 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17229-PA 378 GE17229-PA 1..371 4..374 1854 91.6 Plus