Clone MIP13633 Report

Search the DGRC for MIP13633

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:136
Well:33
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG13358-RD
Protein status:MIP13633.pep: gold
Sequenced Size:2323

Clone Sequence Records

MIP13633.complete Sequence

2323 bp assembled on 2009-11-01

GenBank Submission: BT100195.1

> MIP13633.complete
AGATAGTCGCGTAGATAGTAGTAGTAGTAGTTACCCGCCAGCACTGTGCC
ACGTTGGAGCACGTCGTCAATGTTTTGCACCATGATGCGCTGCACATCCT
GCAGCTGTGTGTTGATGTTGCTGATGTTGCGTCTGCGGTCCGTCAACTGT
TTTTTCGCCTTCTGTATGTACACGTCAAACTCGATGAATGCGTATGGGCG
AGTCACTGAGTTTACTCGCCGGCCGTAGTTAGCATGGAACTCCTGGGCCA
GGTCCTCCAGACTCAAATCCGCTGGCGCAGATGCCGGAAGTGGGTTGGAC
CCCCCAAAAGTCGATGACCAAGCCCAACCGGTTCGCCCGCGAAGACCATC
CTCTGCATGGACATCCACATCCATCCCCAGAAGGAAAAGTGGTTCGCCCG
CGAAACCGGACTTGGACTTGAGGCAGGGACCCAACTATATGGACTACCTG
TGGTACTTGGCGATGGAGCTGCGTGCGAATGTGCGTTTCAAGCGACCACC
GGAAAAATCTTTGCACTGGGAAAATAATTCATATCGAATGCGACTTATTC
ATCTATGTATATTATGAATTGAAGCCCTGCAAGCGAATGCGAATAACCAT
TCCCATTTCTGCTCATACCGAAGAATGCTAAGATATACACAAGTTTGTGA
TCAAAGCGGGAAAGCTTATGACATTATTTAAAATGCTTGTACTGTGATCT
TAAATCGAATGCATTTCAATTAACTCTGAGCCCATCGAGGACTGCGGTCA
ACCTATTTTCTCATCGTGTGATCGGATCACCCGCAGCGGAATGCGTGCGC
TTCCGTTTTGCTCGGCTTGGCCTCCTTCCTCGTTCCGTTGAAAGCAGGTA
TGTATATATAAGCCACTGCTCCACCTAGAGGCTCCACAATACAAAGTCAG
TCATGGCCGGGTCAGTTCGTGCGACGCTCCTGGGTCTCCTCATGCAGATC
CTGTGCAATGGGCTGGCTGGTCAGCAGCTGCTCCTCACACGTCCCCAAAG
GAGCCTGTTCGAGACTCCGCTGGGTCACGTAGAGCAAGTGGAACAAGTGC
CCTCTTTAGGCTGGAATAGTGTTGGTAGTGGACTCGGAGTGGGCGAGTGG
CCCTACAGCCCCGTTGGTCTCGGCCACATGAGCAAGGATGAGCTGCTGAC
CCTGCTGGAGGCCTGGAAGGAGGTCGAGGAGGAATCGGCCACAACAACGA
CTGCGTCGCCAGCGGATGCCAGCACACGTAGACCTCCTCCGCCTCCACTG
CCACCACCACCACCTCCTCCGCCACGACCCACACCCATACCAGTCTCCGT
TGCAATCCCGTCACCGGCTGTTCCGCCCTCCGGCACTCCCATTACAGTGC
GGCTCCCAGCCTTTGTGCCTGTGCGTCTGGCTGCCGTGTTTACTCCGCTT
GCCGGTGGACAAGCTGATAGTGCTGTTCCGTCTGCCAACGGAGTCGGAGG
GGCTGGAGGAGATGATTTGTCCACCGATGACGTGACAGATGATGACGGCG
TCTCTACCCGGCTCTTTCGCTTTTTGCCCATGCCAGGAGCTCGAACGAGA
CCGCAATCCAATTCACAGCCCAGGCAGCAATTTGTGGTGAGGAACACCCT
GGACAGCGTGGATGCGGGCACTGCCCCTGTCAGGCAGCAGATTAAACCGG
AAGTCCAGCCCAAGGCGACTGCTCCGCCTTCCATTCCCAAGTTCCCTGGC
CACCCAACTCCCTTCTTCCGTCCCAGATTTGGTGTGCCACCGAGTCTGGC
CAACGCTCGATTCGAGCTGGTGCCCTCTTCCCAAATCATCGGCGACTGGC
GGGTGTGAGCCTGTGCATCACTTGACTGACCAAAACGGAGTACCTTCCGG
CGAACCAACCAGGATCGAGCTTTTGAAGGAGGCTGTCTTGCTAGGCTGTT
TCCACTGTTGCTTATGTATTTTATTTTTTATTGAATAATAATTTTTTTTT
TTTTTTTTGTGTCCAAATAGAATATGCAATCAGTCATAGATTAGCGACAT
ACTAACTGCTTTCGAATTGAAGTAGGCACTTTTTCTGCTCCAATGGCCAT
GTGAAGCCATATATGTACATCTATTTGTATGTCCTCTGAAATCGCTCAGC
TTTTAAAACAAAGAGCAGTCTGAAGAGTACATATAAAGATAGCGATCAGC
CCGAGTATTTAGCCATAACAATTTATAGTATTTTTCGAATCCTAAGATTG
GAATATTCAGTTCAATCGAATATGTATGCAGTTTCCCCTCACACAGTTTT
ATAAGTTGGCCTGAAGTTTTTGTACAAAAAAATATAAATTTTATATTTAG
AAATGAAAAAAAAAAAAAAAAAA

MIP13633.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13358.b 1789 CG13358.b 23..1789 258..2024 8835 100 Plus
CG13358.a 1278 CG13358.a 1..1278 747..2024 6390 100 Plus
Sec22-RA 1983 Sec22-RA 894..1119 260..35 1130 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 698050..699518 1726..258 7150 99.1 Minus
chrX 22417052 chrX 697404..697980 2305..1725 2765 98.8 Minus
chrX 22417052 chrX 701021..701280 260..1 1285 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:14:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 804074..805542 1726..258 7345 100 Minus
X 23542271 X 803421..804004 2308..1725 2920 100 Minus
X 23542271 X 807045..807304 260..1 1300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 812172..813640 1726..258 7345 100 Minus
X 23527363 X 811519..812102 2308..1725 2920 100 Minus
X 23527363 X 815143..815402 260..1 1300 100 Minus
Blast to na_te.dros performed 2019-03-15 10:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 488..561 1965..1895 128 67.6 Minus
Stalker4 7359 Stalker4 STALKER4 7359bp 1392..1460 1913..1975 115 68.1 Plus
Stalker 7256 Stalker STALKER 7256bp 1284..1352 1913..1975 115 68.1 Plus

MIP13633.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:01:01 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 698050..698490 1286..1726 99 == Minus
chrX 697438..697978 1727..2271 91 <- Minus
chrX 698545..699515 261..1231 98 <- Minus
chrX 701021..701280 1..260 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-11-01 09:32:52 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RB 1..930 879..1808 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-08-09 19:35:24 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RB 1..930 879..1808 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:32:25 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RD 1..906 903..1808 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:18:40 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RD 1..906 903..1808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-11-01 09:32:52 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RB 1..1145 879..2023 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-09 19:35:23 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RB 1..1145 879..2023 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:32:25 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RD 1..1427 879..2305 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:40 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13358-RD 1..1427 879..2305 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:01 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
X 803424..804002 1727..2305 100 <- Minus
X 804074..805539 261..1726 100 <- Minus
X 807045..807304 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:01 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
X 803424..804002 1727..2305 100 <- Minus
X 804074..805539 261..1726 100 <- Minus
X 807045..807304 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:01:01 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
X 803424..804002 1727..2305 100 <- Minus
X 804074..805539 261..1726 100 <- Minus
X 807045..807304 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:32:25 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 697457..698035 1727..2305 100 <- Minus
arm_X 698107..699572 261..1726 100 <- Minus
arm_X 701078..701337 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:05:17 Download gff for MIP13633.complete
Subject Subject Range Query Range Percent Splice Strand
X 811522..812100 1727..2305 100 <- Minus
X 812172..813637 261..1726 100 <- Minus
X 815143..815402 1..260 100   Minus

MIP13633.pep Sequence

Translation from 902 to 1807

> MIP13633.pep
MAGSVRATLLGLLMQILCNGLAGQQLLLTRPQRSLFETPLGHVEQVEQVP
SLGWNSVGSGLGVGEWPYSPVGLGHMSKDELLTLLEAWKEVEEESATTTT
ASPADASTRRPPPPPLPPPPPPPPRPTPIPVSVAIPSPAVPPSGTPITVR
LPAFVPVRLAAVFTPLAGGQADSAVPSANGVGGAGGDDLSTDDVTDDDGV
STRLFRFLPMPGARTRPQSNSQPRQQFVVRNTLDSVDAGTAPVRQQIKPE
VQPKATAPPSIPKFPGHPTPFFRPRFGVPPSLANARFELVPSSQIIGDWR
V*

MIP13633.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22057-PA 315 GF22057-PA 1..314 1..300 546 57.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12740-PA 366 GG12740-PA 63..365 1..300 988 81.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24906-PA 281 GH24906-PA 23..73 23..92 164 51.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13358-PD 301 CG13358-PB 1..301 1..301 1584 100 Plus
CG42449-PB 281 CG42449-PB 10..197 10..191 230 34.8 Plus
CG42449-PA 310 CG42449-PA 10..197 10..191 230 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15967-PA 293 GI15967-PA 14..68 18..91 193 52.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12227-PA 749 GA12227-PA 2..291 7..300 476 47.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19019-PA 984 GM19019-PA 953..984 267..301 153 85.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18858-PA 300 GJ18858-PA 30..299 18..300 333 37.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24962-PA 282 GK24962-PA 17..281 23..300 409 49.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15215-PA 285 GE15215-PA 1..250 61..291 667 71.4 Plus

MIP13633.hyp Sequence

Translation from 902 to 1807

> MIP13633.hyp
MAGSVRATLLGLLMQILCNGLAGQQLLLTRPQRSLFETPLGHVEQVEQVP
SLGWNSVGSGLGVGEWPYSPVGLGHMSKDELLTLLEAWKEVEEESATTTT
ASPADASTRRPPPPPLPPPPPPPPRPTPIPVSVAIPSPAVPPSGTPITVR
LPAFVPVRLAAVFTPLAGGQADSAVPSANGVGGAGGDDLSTDDVTDDDGV
STRLFRFLPMPGARTRPQSNSQPRQQFVVRNTLDSVDAGTAPVRQQIKPE
VQPKATAPPSIPKFPGHPTPFFRPRFGVPPSLANARFELVPSSQIIGDWR
V*

MIP13633.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13358-PD 301 CG13358-PB 1..301 1..301 1584 100 Plus
CG42449-PB 281 CG42449-PB 10..197 10..191 230 34.8 Plus
CG42449-PA 310 CG42449-PA 10..197 10..191 230 34.8 Plus