Clone MIP13722 Report

Search the DGRC for MIP13722

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:137
Well:22
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG12716-RA
Protein status:MIP13722.pep: gold
Sequenced Size:2616

Clone Sequence Records

MIP13722.complete Sequence

2616 bp assembled on 2009-11-04

GenBank Submission: BT100253.1

> MIP13722.complete
CAAGAGTTGAAAAAGTAGAGTGGCTAGCTACATTAGAAATAATTAAAAAT
ATCTACAGCAAATATAAATTGTTAATAAATAAGATCTCTCCAAAAAGTTT
TGTCATTTGAGGAATTTACTTAGCCCATACATGACCTCTGACTTTCCAAA
GAGCTAATCACGTGAATGACCCACAGTTAAAAGTGCGATAAATAATTATG
AATGACCAAGAGCCACCTGCTTCAGTGGCTGCTTATCGAAATAAAGTTAT
TGTTATAGCAAAAGAAAATATGCGATAAGTGCAGTGTCAGTGAAAAAATG
CAGCAAACTCGCATGATAAGCCGCTCGAGTGCTACTATAAAGCTCTGGAT
TCGATCCACGGAGGTCACAAACCACTCGAGATGCAGACGCAGCAGAAACG
GAAAGTTAGCAACAGTCGAGCTTTTACCATGATTTTAATCCTGCTGCAAG
TTCTTGGTATCCTTGGCCGTGGAGTGTTGGCCCAGAAAAGCTCGCCCATT
GCCAACTGGCACATGGCTGATCCGCACTACACAAGTGACCAGTACGCCAA
AATTCTGGGCGAAGCGGGTCTGGGCCAGGATGCCGATGACAAGGAGCACA
AGGGTCTGGGTCCCATGCAAATCCAGTACGTGGACTACCAGCCAAACTGC
CAGCCGGGCGGAGTGCCAGTCTGTGCCACCAATGGAACCGATAGCTTCTA
CTTCGAGAATCATTGCCGTTTGGAGGCGGCCAACATGAAGATGCTCTTCC
AGCACGGCACAGAACTGGAGCCCACGGAGATGGAGCGATGCCTGCCCAAC
TGCCAGACGATGAAGTGCACCCAGGTTGAGCGTCCAGTTTGCGCGCTGGC
CGAGATTGGAGGAGCTATTCCACAAACATTCGCCAACGAGTGCGAAATGC
GAAAACACGAATGCCACACGAAACAAGTCCTGAGAATCCTGCACACTGGT
CCTTGTCAGACTCCAACCAAAAGTGGGCGCAAAAAGAAGCTGCGTCGCAA
CAAGAAAAAGCGACCAACACTCAACGCCTCAATTTCAAAGTTTGCTACCA
TTCCGAAGAAAGTATACATAATGCTGGCCACTCCTGCTCCTAGGAGCAGC
AGCACCACGCCCAGGCCCTTCTTCAGCACAACCACTACCCGAATCACGAC
GACGGCCAGGATGAGGCCCACCAAACCGACCAGCACAAGTCCCTCGCCCA
TGCGATTCCAGCAGCTGATGAACGTGGCTAATCCCATGGTTTCCGTTTCC
CAGGCTATAGATGCCTATAATGTATACAATATACCCGATGTGGGTCACGA
TTACGGCGAGATAACCGACTCCTCGCTCTCGATGTTTTTGCCAGAAGTTG
GTCGTGTCACAGAGCCCTATTCCGTGCCCCCTAGAACCACGACCAAAACT
ACCAGCACCACTAGGGCCACCACCACATCCACCACAACGCCAAAGCCAGT
TTTGGCCACATCCAGGATCATCACTCCTTTGAGCACCAGCACTATGCAAT
CCTTTCTGTCTGTTCGGATGCCGAGCACTACTGAGATGGTCGAAGAATCC
ACAACGGAGAATCCGGAAGCGAGTACACAAGCATTTAGCACCACTCAAAA
ATCCACTGCAACTGCACAAACCAAAATACTTGAATAACTATGTAAAAAAT
TTTTAATATTTATTGAAATTATTTATACAGCTGTTGAGATATATCATAAA
TTATAAAGAAAAAATTTCCAATTTTTAAATCAATCCAACTTTTTTAAAGC
AGTATGCTTTTAAATTCCCTTCAATTCATCAAACTATAGTCTTTCTGCTT
TGACTGACAAAACAACTCAGACAATTTCAGTTGCCTTACTGATCAACATC
AACAACAAGCCAGAAAAAAAACAAAATAAACGGTGGAAAACATGAATTTC
ATGGTAAGAAAATTTGTGGACACGAGGCAAAGATTACATTTCTAACTGCA
TATCCCTGTAGCCAATCATTCTCTTTGTATTGTATGCAATATATTGCAAT
ATGTGTAAAAGTATATCTAAGATTTTATACTGTGGAATGAAGGAACCTTC
CGCTCGGAACGGTACTAATGCAGAGATTTTAGAAATGATCGATTTGAACA
GAGATCCGATTCTCTTCTATGAACAGCGTATATAAAGGAAGGAAATAGAT
AATGGGAATGACTATGCAAGAGGTAGATGATATACTGAACAATATAACAA
CACCCAGGAACTTGAACGGTGATTTTGTCACGATGATGAAGAACGAAACC
TTGGCAAACTTGCAACTTAATAATAATTACATTGTTACATTGTGAACAAG
GACAAAAACAACTCTGGAAACATTTTTGGAAAAGGAGAAAGTCCCTGATA
TACAGCCATTTTGACATCCGTTTCCTGCCTAACAAAACTTTGCATCCCAT
GCGCTAACTCCATGTTTAAGTCCCAGTTTAGTTTCGAGTGCAACCATTTA
TTATCATATAACGTTCTTAAATTTACAATTTTTAACTCAAAATCAACATT
GTTCTATATTAACACAACATATGTACAATTACACTAGAACCCAGTTTATA
ACTTGCTTAACAGCCCAAAAATATAAAATAAATGTTACTCCGATCTGAAA
AAAAAAAAAAAAAAAA

MIP13722.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12716-RA 1632 CG12716-RA 1..1632 108..1739 8160 100 Plus
CG12716.a 1602 CG12716.a 1..1602 138..1739 8010 100 Plus
CG15721-RA 2532 CG15721-RA 2494..2532 1972..1934 195 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12864796..12866468 2597..926 8240 99.8 Minus
chrX 22417052 chrX 12866822..12867583 762..1 3705 99.1 Minus
chrX 22417052 chrX 12866529..12866696 927..760 840 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:15:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12973824..12975496 2598..926 8365 100 Minus
X 23542271 X 12975850..12976611 762..1 3810 100 Minus
X 23542271 X 12975557..12975724 927..760 840 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12981922..12983594 2598..926 8365 100 Minus
X 23527363 X 12983948..12984709 762..1 3810 100 Minus
X 23527363 X 12983655..12983822 927..760 840 100 Minus
Blast to na_te.dros performed 2019-03-16 07:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 4582..4672 1414..1501 141 64.8 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 5209..5283 1842..1915 130 69.2 Plus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1171..1243 1714..1637 126 66.7 Minus
gypsy4 6852 gypsy4 GYPSY4 6852bp 5043..5118 45..122 124 64.1 Plus
412 7567 412 412 7567bp 3601..3747 2447..2593 122 59.2 Plus

MIP13722.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:27:27 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12866529..12866693 763..927 100 <- Minus
chrX 12864796..12865955 1439..2597 96 == Minus
chrX 12866009..12866466 928..1385 99 <- Minus
chrX 12866822..12867583 1..762 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-11-04 10:21:58 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12716-RA 1..1257 381..1637 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:17:26 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12716-RA 1..1257 381..1637 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:36:40 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12716-RA 1..1257 381..1637 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:31:14 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12716-RA 1..1257 381..1637 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-11-04 10:21:58 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12716-RA 1..1257 381..1637 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:17:26 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12716-RA 1..1257 381..1637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:40 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12716-RA 1..1359 381..1739 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:31:14 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
CG12716-RA 1..1359 381..1739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:27 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
X 12973825..12975494 928..2597 100 <- Minus
X 12975557..12975721 763..927 100 <- Minus
X 12975850..12976611 1..762 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:27 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
X 12973825..12975494 928..2597 100 <- Minus
X 12975557..12975721 763..927 100 <- Minus
X 12975850..12976611 1..762 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:27:27 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
X 12973825..12975494 928..2597 100 <- Minus
X 12975557..12975721 763..927 100 <- Minus
X 12975850..12976611 1..762 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:40 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12869590..12869754 763..927 100 <- Minus
arm_X 12867858..12869527 928..2597 100 <- Minus
arm_X 12869883..12870644 1..762 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:06:55 Download gff for MIP13722.complete
Subject Subject Range Query Range Percent Splice Strand
X 12981923..12983592 928..2597 100 <- Minus
X 12983655..12983819 763..927 100 <- Minus
X 12983948..12984709 1..762 100   Minus

MIP13722.hyp Sequence

Translation from 380 to 1636

> MIP13722.hyp
MQTQQKRKVSNSRAFTMILILLQVLGILGRGVLAQKSSPIANWHMADPHY
TSDQYAKILGEAGLGQDADDKEHKGLGPMQIQYVDYQPNCQPGGVPVCAT
NGTDSFYFENHCRLEAANMKMLFQHGTELEPTEMERCLPNCQTMKCTQVE
RPVCALAEIGGAIPQTFANECEMRKHECHTKQVLRILHTGPCQTPTKSGR
KKKLRRNKKKRPTLNASISKFATIPKKVYIMLATPAPRSSSTTPRPFFST
TTTRITTTARMRPTKPTSTSPSPMRFQQLMNVANPMVSVSQAIDAYNVYN
IPDVGHDYGEITDSSLSMFLPEVGRVTEPYSVPPRTTTKTTSTTRATTTS
TTTPKPVLATSRIITPLSTSTMQSFLSVRMPSTTEMVEESTTENPEASTQ
AFSTTQKSTATAQTKILE*

MIP13722.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12716-PA 418 CG12716-PA 1..418 1..418 2178 100 Plus
CG46026-PA 666 CG46026-PA 404..621 212..411 158 26.5 Plus

MIP13722.pep Sequence

Translation from 380 to 1636

> MIP13722.pep
MQTQQKRKVSNSRAFTMILILLQVLGILGRGVLAQKSSPIANWHMADPHY
TSDQYAKILGEAGLGQDADDKEHKGLGPMQIQYVDYQPNCQPGGVPVCAT
NGTDSFYFENHCRLEAANMKMLFQHGTELEPTEMERCLPNCQTMKCTQVE
RPVCALAEIGGAIPQTFANECEMRKHECHTKQVLRILHTGPCQTPTKSGR
KKKLRRNKKKRPTLNASISKFATIPKKVYIMLATPAPRSSSTTPRPFFST
TTTRITTTARMRPTKPTSTSPSPMRFQQLMNVANPMVSVSQAIDAYNVYN
IPDVGHDYGEITDSSLSMFLPEVGRVTEPYSVPPRTTTKTTSTTRATTTS
TTTPKPVLATSRIITPLSTSTMQSFLSVRMPSTTEMVEESTTENPEASTQ
AFSTTQKSTATAQTKILE*

MIP13722.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20879-PA 377 GF20879-PA 4..311 19..330 898 58.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19528-PA 412 GG19528-PA 1..412 1..416 1508 83.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24551-PA 981 GH24551-PA 6..297 13..324 608 41.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12716-PA 418 CG12716-PA 1..418 1..418 2178 100 Plus
CG46026-PA 666 CG46026-PA 404..621 212..411 158 26.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16271-PA 413 GI16271-PA 37..296 38..324 597 48.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22956-PA 445 GL22956-PA 42..424 1..401 995 53.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11771-PA 446 GA11771-PA 42..425 1..401 984 53.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11522-PA 414 GM11522-PA 1..414 1..417 1748 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15911-PA 411 GD15911-PA 1..411 1..417 1718 89 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16912-PA 441 GJ16912-PA 25..306 33..324 631 46.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24947-PA 511 GK24947-PA 26..295 77..328 486 42.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16186-PA 402 GE16186-PA 1..402 17..417 1657 86.1 Plus