Clone MIP13825 Report

Search the DGRC for MIP13825

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:138
Well:25
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG12984-RA
Protein status:MIP13825.pep: gold
Sequenced Size:853

Clone Sequence Records

MIP13825.complete Sequence

853 bp assembled on 2009-09-28

GenBank Submission: BT099888.1

> MIP13825.complete
AACTCTTTTCAACGTTATTCGATTTAATTTTGCAATTTCGAACATGAATG
TGGACAAAGCCAGAGACGAGATGATTGAGATGTCCGAGCAGGTGTGGAAG
GATGCGGAGCAGTGGCAAAGAGGTATCCACAATGGTCAGGCGGTCATGAA
GCAGATCAAGGCCATAAATCTTAAGCTCTTCAGCACCGAGAATAGGCTGA
ACAACGCGGACTCGCGTAAGGAGCTCCAGGCCACAGGGAAACGGATCAAC
CACTTGTACCAATGCCTCCAACGACCTCTCGCCACGATAGGCAACATTTT
AAGGACCCTGACCGGTATCAGGGACAACACTGCCAGGATGTTGAGCCGCT
TGACCATATTCTTGGACGATGAAACACTGGCGAAGCACAGAATACGGCCC
AAGCTCGAGAGTTCCAAGCTTCTGAAGATGCTGCAGTTCCTAAGCCACCG
TTACGATACCGAATGGGAGGTCAAGGAAATGGTCGTGAACGAATTGGAGA
GAATCAGCAACTCCTATGATCTGGATCTTGCAATGGCGTGCTGGAGCACT
TGCAGTCACGCAGGAGGTCCAGAGTTCGCAAAGATGATGCGCGAGTATTA
CTGGATCATTGATCGCCGGCAACCTTTTTAGCTGACTTCCTAAAAACGAA
GTAGAGTCCTATGTCGAGGACACCACGAGGGTTCATTAGATGTTAATCCA
CTATTTTAAGAGAAAAAACTTTACGTTTTGAATTTGATGTTAGTTTTATT
TGAAAAATTGTTTTTTAGTTTGTATTTGTTACCACCTGTTTGCCAAACAA
ATCTATAATCTGTAAAGAAATTACTAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

MIP13825.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12984-RA 1022 CG12984-RA 100..929 1..830 4135 99.8 Plus
CG12984.a 1721 CG12984.a 100..929 1..830 4135 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20980685..20981172 1..488 2440 100 Plus
chr3L 24539361 chr3L 20981607..20981942 489..824 1680 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:15:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20991673..20992160 1..488 2440 100 Plus
3L 28110227 3L 20992595..20992936 489..830 1695 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20984773..20985260 1..488 2440 100 Plus
3L 28103327 3L 20985695..20986036 489..830 1695 99.7 Plus
Blast to na_te.dros performed on 2019-03-16 20:39:41 has no hits.

MIP13825.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:35 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20980685..20981172 1..488 100 -> Plus
chr3L 20981607..20981942 489..825 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:58 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12984-RA 1..588 44..631 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:35:11 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12984-RA 1..588 44..631 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:26 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12984-RA 1..588 44..631 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:36 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12984-RA 1..588 44..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-28 14:38:15 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12984-RA 1..588 44..631 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:35:11 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12984-RA 1..824 1..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:26 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12984-RA 1..824 1..824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:36 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
CG12984-RA 1..824 1..824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:35 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20991673..20992160 1..488 100 -> Plus
3L 20992595..20992930 489..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:35 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20991673..20992160 1..488 100 -> Plus
3L 20992595..20992930 489..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:35 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20991673..20992160 1..488 100 -> Plus
3L 20992595..20992930 489..825 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:26 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20985695..20986030 489..825 99   Plus
arm_3L 20984773..20985260 1..488 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:18:50 Download gff for MIP13825.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20984773..20985260 1..488 100 -> Plus
3L 20985695..20986030 489..825 99   Plus

MIP13825.hyp Sequence

Translation from 0 to 630

> MIP13825.hyp
TLFNVIRFNFAISNMNVDKARDEMIEMSEQVWKDAEQWQRGIHNGQAVMK
QIKAINLKLFSTENRLNNADSRKELQATGKRINHLYQCLQRPLATIGNIL
RTLTGIRDNTARMLSRLTIFLDDETLAKHRIRPKLESSKLLKMLQFLSHR
YDTEWEVKEMVVNELERISNSYDLDLAMACWSTCSHAGGPEFAKMMREYY
WIIDRRQPF*

MIP13825.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12984-PA 195 CG12984-PA 1..195 15..209 1020 100 Plus
CG12984-PB 32 CG12984-PB 1..32 178..209 189 100 Plus

MIP13825.pep Sequence

Translation from 1 to 630

> MIP13825.pep
TLFNVIRFNFAISNMNVDKARDEMIEMSEQVWKDAEQWQRGIHNGQAVMK
QIKAINLKLFSTENRLNNADSRKELQATGKRINHLYQCLQRPLATIGNIL
RTLTGIRDNTARMLSRLTIFLDDETLAKHRIRPKLESSKLLKMLQFLSHR
YDTEWEVKEMVVNELERISNSYDLDLAMACWSTCSHAGGPEFAKMMREYY
WIIDRRQPF*

MIP13825.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24291-PA 213 GF24291-PA 1..195 15..209 440 42.6 Plus
Dana\GF19990-PA 150 GF19990-PA 1..148 15..162 399 50.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16154-PA 199 GG16154-PA 1..195 15..209 801 76.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15915-PA 197 GH15915-PA 1..186 15..200 245 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12984-PA 195 CG12984-PA 1..195 15..209 1020 100 Plus
CG12984-PB 32 CG12984-PB 1..32 178..209 189 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16568-PA 203 GI16568-PA 1..193 15..207 184 26.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24451-PA 181 GL24451-PA 1..173 27..199 303 37.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11955-PA 181 GA11955-PA 1..173 27..199 318 38.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22335-PA 195 GM22335-PA 1..195 15..209 926 86.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14925-PA 195 GD14925-PA 1..195 15..209 920 86.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12820-PA 208 GJ12820-PA 2..197 11..206 359 39.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18380-PA 214 GK18380-PA 1..212 27..206 277 31.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23253-PA 187 GE23253-PA 1..183 27..209 795 80.9 Plus
Dyak\GE19722-PA 187 GE19722-PA 1..183 27..209 792 80.9 Plus