Clone MIP13924 Report

Search the DGRC for MIP13924

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:139
Well:24
Vector:pOT2|pOTB7_DraIII
Associated Gene/Transcriptebd2-RA
Protein status:MIP13924.pep: gold
Sequenced Size:1897

Clone Sequence Records

MIP13924.complete Sequence

1897 bp assembled on 2009-11-09

GenBank Submission: BT100271.1

> MIP13924.complete
CACAGAGCAGTAAACAACGAACAGCGCTTAGTGCCACATCACGGAATCTT
ATCGCTCTCGTTCGTTCGGTCGTCCAAAAGCCAAAAACCCAACCAGACCA
AAAACCGACTAGCCCGAGACCAAAAACCCGGACCCCGAGCAAATACGAAG
CTGCCTCGGCTGCAGAACAAACAAGTCATCTAGTAAGTAGCGTGCTGCAG
CAAAAACAGAAACAACAGGCATCCAAATCGACGACCAGGTGAACCAGCTT
CAAAAAGGAGTCTCGCACGAACACATCTCTATCTCCCTCTGACGCATGAT
CTAAGTGGCGCGAGAGCGGAACGACTACAGCCGTAAGAGCGCAAGAAGCT
GCTGCGCAGTTATCGGAAAAGAAGAAGTGGAGAAGGAAAAGAAGGAGAAC
GGAAAGAGCAGAAACCTAGTTGCAATTGACTTAACACAACTATTGAAATG
GCTGCTATTGCCGCCCTGCCAACAACAACGTTGCGGCGCAACAACAACAA
CAACACCAAAGGGATCAAATCCCGTCGCAATGAGCGTAACATCCTGACAT
TCTACGAAAAGATTGCCGTAATCCGTTACTATGACGAGACCAACATCTCT
AGGAACAGTCTGGCCAAGATGTTCCACTGCTGCGCCACCCAAATACGTAG
AATCTTGGATAAGAAAAAGGATCTGCTGCAGCAGTTGGCCACCTTAAGCG
AGGCAGATGCCTCCATTATAATCGAAGAGATGACGCGCAAGCGCCGCAAG
TTCGAAATGAGTGCCATCAGCTTCCTACTACACGAGTGGGTGGAAAGGTG
CATCCAAATGCAGTTGAACATCAGCATAAGGAACCAAAAACTGAAGGAAA
CCGCCATCCGGATGGCAGCTGTGTTGAACCTGCCATCCTTCAGACCATCC
TATCGATGGCTAAGCCGATTCCGCAACAAGTACAAGTACGAGGCCGATGA
ATTGGGCTACCAGGGCGAAAATCCCTTGAACCAGGACCTGCCTGTCGAAG
ACATCATTGTGGAGTTTAAGCATGCACTGCCGAACTTCATGCAACGGGAG
CTGGATAATCCAGGCGAAGCAATCTCAAAAGCAGCTGTTATGGCAGATTT
TGTCAATCTCTCCAGCGAAAACAGTATCATGTCCGATCATCCAGAGGGGG
ATAATGAAGTGGAGCTGGTAACATGTGAGCCCACCATGATGTCCTCACCA
TCCAGCACACCAGATGCTGCAGAGGGGGAAATACCTCTGCAGGCACATGG
CGACCAGGAAAACCCGGATGATCAGATTAACGCTGGAACCAGTACTCTTC
TGAATGGGGTTTTTCCGCATCTAGCCATTATCCACCAGTTCGCTCTGATG
AACTCGGATGTACAGGCATTGGAACTTATCTCCCAGCTGGGAGTGCACAT
GCAGCAACAGGCTGTTTCTGGAGCTTATCATAACCTGTCGCTGGCGACTA
CCGATGGAGATGGGCAAGACGATCCAGGAGAAATCGCTCTTTCGGAACTG
CCACCGGGAAGTATTTACGCCGATATCGATGACATCGAATTGATCGAGTA
AAAACATCAATTTATCAAAAGGTTAAAGCTAGTCTAAACTTATGCCTCAG
CGTAGTCGACTGTTATTTATAATCAACAAATCGTTTTGTTATGAACTTAA
ATGAGTTCATTTCACCAAAAAAGTACTTAAGGCCTTCGACTTTTATTAAG
ATTAATTCTTAAAACAACAACAATAAGAGATCTACTTCATAATTTAGTTT
AAATCAAATTCGATTTGATTGATTAAAAGGTTAATAAACCAGAATTGCTT
ATTATGATCATGTTAAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP13924.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12972.a 1720 CG12972.a 170..1720 248..1798 7755 100 Plus
CG12972.b 1526 CG12972.b 40..1526 245..1731 7435 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21333776..21335084 1821..513 6545 100 Minus
chr3L 24539361 chr3L 21335697..21335965 513..245 1345 100 Minus
chr3L 24539361 chr3L 21338050..21338296 247..1 1235 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:15:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21344766..21346076 1823..513 6555 100 Minus
3L 28110227 3L 21346689..21346957 513..245 1345 100 Minus
3L 28110227 3L 21349042..21349288 247..1 1235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21337866..21339176 1823..513 6555 100 Minus
3L 28103327 3L 21339789..21340057 513..245 1345 100 Minus
3L 28103327 3L 21342142..21342388 247..1 1235 100 Minus
2R 25260384 2R 15022478..15022528 1864..1814 255 100 Minus
3L 28103327 3L 926773..926815 1814..1856 215 100 Plus
Blast to na_te.dros performed 2019-03-16 17:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 2712..2791 163..247 116 63.5 Plus
Dbuz\BuT4 1447 Dbuz\BuT4 BUT4 1447bp 194..361 171..2 114 58.3 Minus

MIP13924.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:10:24 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21333776..21335083 514..1821 100 <- Minus
chr3L 21335697..21335962 248..513 100 <- Minus
chr3L 21338050..21338296 1..247 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-11-09 15:52:56 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12972-RA 1..1104 448..1551 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:18:11 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12972-RA 1..1104 448..1551 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:26 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
ebd2-RA 1..1104 448..1551 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:20 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
ebd2-RA 1..1104 448..1551 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-11-09 15:52:53 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12972-RA 1..1104 448..1551 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:18:11 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
CG12972-RA 26..1336 239..1551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:26 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
ebd2-RB 1..1821 1..1821 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:20 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
ebd2-RB 1..1821 1..1821 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:10:24 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21344768..21346075 514..1821 100 <- Minus
3L 21346689..21346954 248..513 100 <- Minus
3L 21349042..21349288 1..247 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:10:24 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21344768..21346075 514..1821 100 <- Minus
3L 21346689..21346954 248..513 100 <- Minus
3L 21349042..21349288 1..247 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:10:24 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21344768..21346075 514..1821 100 <- Minus
3L 21346689..21346954 248..513 100 <- Minus
3L 21349042..21349288 1..247 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:26 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21337868..21339175 514..1821 100 <- Minus
arm_3L 21339789..21340054 248..513 100 <- Minus
arm_3L 21342142..21342388 1..247 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:07:28 Download gff for MIP13924.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21342142..21342388 1..247 100   Minus
3L 21337868..21339175 514..1821 100 <- Minus
3L 21339789..21340054 248..513 100 <- Minus

MIP13924.hyp Sequence

Translation from 447 to 1550

> MIP13924.hyp
MAAIAALPTTTLRRNNNNNTKGIKSRRNERNILTFYEKIAVIRYYDETNI
SRNSLAKMFHCCATQIRRILDKKKDLLQQLATLSEADASIIIEEMTRKRR
KFEMSAISFLLHEWVERCIQMQLNISIRNQKLKETAIRMAAVLNLPSFRP
SYRWLSRFRNKYKYEADELGYQGENPLNQDLPVEDIIVEFKHALPNFMQR
ELDNPGEAISKAAVMADFVNLSSENSIMSDHPEGDNEVELVTCEPTMMSS
PSSTPDAAEGEIPLQAHGDQENPDDQINAGTSTLLNGVFPHLAIIHQFAL
MNSDVQALELISQLGVHMQQQAVSGAYHNLSLATTDGDGQDDPGEIALSE
LPPGSIYADIDDIELIE*

MIP13924.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
ebd2-PB 367 CG12972-PB 1..367 1..367 1878 100 Plus
ebd2-PA 367 CG12972-PA 1..367 1..367 1878 100 Plus

MIP13924.pep Sequence

Translation from 447 to 1550

> MIP13924.pep
MAAIAALPTTTLRRNNNNNTKGIKSRRNERNILTFYEKIAVIRYYDETNI
SRNSLAKMFHCCATQIRRILDKKKDLLQQLATLSEADASIIIEEMTRKRR
KFEMSAISFLLHEWVERCIQMQLNISIRNQKLKETAIRMAAVLNLPSFRP
SYRWLSRFRNKYKYEADELGYQGENPLNQDLPVEDIIVEFKHALPNFMQR
ELDNPGEAISKAAVMADFVNLSSENSIMSDHPEGDNEVELVTCEPTMMSS
PSSTPDAAEGEIPLQAHGDQENPDDQINAGTSTLLNGVFPHLAIIHQFAL
MNSDVQALELISQLGVHMQQQAVSGAYHNLSLATTDGDGQDDPGEIALSE
LPPGSIYADIDDIELIE*

MIP13924.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24198-PA 359 GF24198-PA 1..359 1..367 1392 77.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13241-PA 367 GG13241-PA 1..367 1..367 1792 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16581-PA 364 GH16581-PA 33..364 26..367 1202 69.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
ebd2-PB 367 CG12972-PB 1..367 1..367 1878 100 Plus
ebd2-PA 367 CG12972-PA 1..367 1..367 1878 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13308-PA 367 GI13308-PA 7..367 11..367 1269 68.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24585-PA 355 GL24585-PA 1..355 1..367 1357 73.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11947-PA 355 GA11947-PA 1..355 1..367 1352 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22144-PA 367 GM22144-PA 1..367 1..367 1889 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12122-PA 367 GD12122-PA 1..367 1..367 1901 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12078-PA 368 GJ12078-PA 18..368 13..367 1208 68.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20421-PA 392 GK20421-PA 23..392 13..367 1321 72 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22341-PA 363 GE22341-PA 1..363 1..367 1789 91 Plus
Dyak\GE22339-PA 363 GE22339-PA 1..363 1..367 1786 90.7 Plus