Clone MIP13937 Report

Search the DGRC for MIP13937

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:139
Well:37
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG13685-RA
Protein status:MIP13937.pep: gold
Sequenced Size:2501

Clone Sequence Records

MIP13937.complete Sequence

2501 bp assembled on 2009-11-04

GenBank Submission: BT100263.1

> MIP13937.complete
TTTCGAGTCCGTGCAGTCGTGTTGACCGGAGTGAAAAGCGACGTGGAAAA
TTTGCAAAAAAAAAAAAATAAAAAGTTACAAATAATACAAAACAGAGGAA
ATAGAGAAATAGAGAAAAGTAAATAAGCAAACAAGTGCAGTTTTGTTGGA
AGAGAAGTGTGTACGGAAAGGGGAGATTAATCCCTCGGACCTAGCATAGA
TACCTACATTTTTGGTGGTCCCAAAAACACGGTGTGCTGAAAACGCAGAG
AAATCCCGAAGTATCAACAACCATGTCGACGTTACCCTTTTTGCTGAGCG
TCGCCGACGAGCTGGACAACATACACTCACAGTCCTACATGGATGACTTT
GGCTTGGGCTTCCATCCGCACCGCCAGTACTATCGCACACCCACCATTCA
GTTGTCCCTGCCCGCCAGCACCGACTGGACGGGATCGGGTCGGGACTGGT
CCCAGACAGCGGGCAACAGGCATACTCGCTACCGCAGCTATAAGTTTTAC
GATGACTCACAGAACAATCTGGAGGAGGAGGAGCCGCCCGTGGAGGATCC
TCAACCCATTGAACAGATGAAGTTGCCACAGCAGTTGGTCCAGCAGACCA
ACCAGACGATATCGGATCCCCAGCAACCGACGAGTGCAACTGCCACTGCA
GCCACAACTCGCAAGGGACTGGGCATGGTCAACTCCCACTCGCATGATGT
GGGTGTTGGTGGTCTGGGCCTGAATCTCAAAGCTGACGAGGATGAGGACG
ATGAGAACATCGATCGCACGGTGCGCATGTATAATTTGTCCAAGAAGTGC
TGCAAGAACTACTATCGGCACGCCTTGGAGACCGGACCCGGCGCCAGTGG
CAAGGTCAAGTGCAGCAATGCGCGCTCCGAGAGCCATAAGTCCAGCTCCA
GTTCGGAGGAAAGCCTCCAGAAGATACCCTCGCCCATAGAGTTCCTCACC
TGCTTTCTGGTGAAGAAGTCGCGCACCCCCAAGGCAAATGTGCCAGTTGG
GCAGCCGCTGAAGAAGACATAGAACACGGCCCGGCTGCTGCCAGCAGCGA
TGTCCACTAGGACCTCCACAATCAGCTCCACGGCCACCAGTGGAGCCGTG
ACCAATGCAACCACGGACACGGATACGACCACGTCGAAGCGCCGGAGTAA
CTGCTTCTGAATGTTGGCCGGAGTCGGTGTCGTTTGTGGCCAGGCATGGA
GTTGGCTCCAGCGGTGCGGGGAGCTTCCCAATTCGGAGCCCGCCTCGTTG
CCCTCCACGCGTCTGGGCAGGATCGCGTACTAGGATCATTCGACCGACTC
CGATTCGCAGTCAGGGGTATATATATTTGGCGTATGATTTATCACTGGGA
TAATTTCTGGCTTAATTGGAATTATGGGAATTTATCGAAAAGGAACTTGG
AGGGCTAGCGATTTTATTTTGCACTGGAAATCAACTTTGGTAATAAACAG
GGCACTTTTAATATAGTAAAATTCTTATAAACTCCTTGAACTTATTGTTT
GAATGGCTTTTTTGAAATGCTTTGTAATAAACATTGTACTGAAATTTTAA
AACCCTGTTCATCACTGATTTTCAGTGCAAAAAATCCCGTAGCCACAATT
TGCAAGAAATTACAGGCCAAACGCAATTTGAAGCTTAAAGCAAACATAAT
ATTACCAATAGAATATAAATAATGATAAACTATTAAACCAACACCGAAAC
ATTTTTGCAAACCAAACACACACAATTTTTAAGAGCCAGATTTATACCAA
AATAAGAAGATTCCAGGAATTTGTTAAGCAAACATTTTTTATACAATTTT
TTGATACCAAGCAAACGATATAACTTATATATGGATATTATATTAATACT
GGGAATGTTTGATTAAATAAAAAAAAAGAAGGAAATTCTAGCTCAACCGA
AACCTATAAGCACTATCTATTTCATTTTAACGAGAGTTATAATACTTTCA
GGGAGAATTTTATAAACCTATTGCCATTTTACTAATTAATTTAATAATGA
AAATTTTCTTTTACATGTTGACTGACTTAAAGGTACTGGTTGAGCTCGAA
ATTCCTAGCAATTTTATAAATGCTGTTAGCTGTTTTAAGCCAAATAAATT
GCGGGCTAATTTAATGGGTCTTCTAAAACACAAACACACACAAAAACAAG
GATACACCAATAGCAACGTTTCATTTTCACGCAGACACAGTAAAGTTTAG
TTTTCTCCCATTTTTTCCAGCTAACTGAAAAGTGTTGGCAAAAAAAAAGA
GAAAATTTCTGAAAAGCTGGGGGAACTTTTGCACAATGTCGGCAAGTGTT
TGGGCCAAAAGGGTGGAATGGGGGCGGCAGTGGGCCCCATAAAGAGTGAA
ACATGTTTTCAATTTCCTTTTTTTTCGGGGGACTGTAAACAAGTCAATAG
CAAACTACGGCTAAGGACAAACACACAGAAGACCTTGGTCCCAATTTCAA
ATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

MIP13937.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13685-RA 750 CG13685-RA 1..750 273..1022 3750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7739441..7741899 1..2454 11610 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:15:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7747344..7749828 1..2485 12225 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7740444..7742928 1..2485 12245 99.6 Plus
Blast to na_te.dros performed 2019-03-15 15:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1165..1426 1637..1885 127 57.4 Plus
TAHRE 10463 TAHRE OSV 10463bp 7983..8119 1603..1731 124 59.9 Plus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 2246..2335 34..121 120 63.7 Plus

MIP13937.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:01:34 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7739576..7741901 135..2456 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-11-04 16:28:43 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
CG13685-RA 1..750 273..1022 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:17:54 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
CG13685-RA 1..750 273..1022 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:57:07 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
CG13685-RB 1..888 273..1160 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:21:38 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
CG13685-RD 1..1011 273..1283 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-11-04 16:28:43 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
CG13685-RA 1..750 273..1022 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:17:54 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
CG13685-RA 1..750 273..1022 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:57:07 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
CG13685-RA 1..2456 1..2456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:21:38 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
CG13685-RB 1..2456 1..2456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:01:34 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7747344..7749799 1..2456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:01:34 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7747344..7749799 1..2456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:01:34 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7747344..7749799 1..2456 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:57:07 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7740444..7742899 1..2456 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:07:16 Download gff for MIP13937.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7740444..7742899 1..2456 99   Plus

MIP13937.hyp Sequence

Translation from 272 to 1021

> MIP13937.hyp
MSTLPFLLSVADELDNIHSQSYMDDFGLGFHPHRQYYRTPTIQLSLPAST
DWTGSGRDWSQTAGNRHTRYRSYKFYDDSQNNLEEEEPPVEDPQPIEQMK
LPQQLVQQTNQTISDPQQPTSATATAATTRKGLGMVNSHSHDVGVGGLGL
NLKADEDEDDENIDRTVRMYNLSKKCCKNYYRHALETGPGASGKVKCSNA
RSESHKSSSSSEESLQKIPSPIEFLTCFLVKKSRTPKANVPVGQPLKKT*

MIP13937.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13685-PC 249 CG13685-PC 1..249 1..249 1321 100 Plus
CG13685-PA 249 CG13685-PA 1..249 1..249 1321 100 Plus
CG13685-PB 295 CG13685-PB 1..249 1..249 1321 100 Plus
CG13685-PD 336 CG13685-PD 1..249 1..249 1321 100 Plus

MIP13937.pep Sequence

Translation from 272 to 1021

> MIP13937.pep
MSTLPFLLSVADELDNIHSQSYMDDFGLGFHPHRQYYRTPTIQLSLPAST
DWTGSGRDWSQTAGNRHTRYRSYKFYDDSQNNLEEEEPPVEDPQPIEQMK
LPQQLVQQTNQTISDPQQPTSATATAATTRKGLGMVNSHSHDVGVGGLGL
NLKADEDEDDENIDRTVRMYNLSKKCCKNYYRHALETGPGASGKVKCSNA
RSESHKSSSSSEESLQKIPSPIEFLTCFLVKKSRTPKANVPVGQPLKKT*

MIP13937.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10322-PA 252 GF10322-PA 1..252 1..249 903 80.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14446-PA 249 GG14446-PA 1..249 1..249 1323 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15297-PA 257 GH15297-PA 1..257 1..249 806 67.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13685-PD 336 CG13685-PD 1..249 1..249 1321 100 Plus
CG13685-PC 249 CG13685-PC 1..249 1..249 1321 100 Plus
CG13685-PB 295 CG13685-PB 1..249 1..249 1321 100 Plus
CG13685-PA 249 CG13685-PA 1..249 1..249 1321 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12008-PA 248 GI12008-PA 1..248 1..249 828 69 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18036-PA 260 GL18036-PA 1..260 1..249 847 71.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12458-PA 259 GA12458-PA 1..259 1..249 856 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24998-PA 249 GM24998-PA 1..249 1..249 1323 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14031-PA 249 GD14031-PA 1..249 1..249 1322 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13279-PA 259 GJ13279-PA 1..259 1..249 798 64.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21202-PA 289 GK21202-PA 1..81 1..79 344 82.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21637-PA 251 GE21637-PA 1..251 1..249 1299 97.6 Plus