Clone MIP13960 Report

Search the DGRC for MIP13960

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:139
Well:60
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG15169-RA
Protein status:MIP13960.pep: gold
Sequenced Size:1372

Clone Sequence Records

MIP13960.complete Sequence

1372 bp assembled on 2011-09-01

GenBank Submission: BT128866.1

> MIP13960.complete
AACCGATCGGTGACCACGATGCGGATGAGATTGCTGGTCATTTGGATTTC
CCTAACTGCTCTCCTTGAATGGAGCAGGGCGCAGGAGGACAACATTGAAG
AGTTCAGCTTAAGCGGCGGACTAGCGGGTGAAAAGTCAGAAAACTCAGGC
ATTGAAGCCGGTGAAAATGACACAGAATCCCTAGGACAAAGTCACTTATT
TTTGAACACAACACAAAGTCCAACTGATGACCCTGAGCCTACACAGGAAC
TGTCATCTATTGAAAGTCAAGTTGGACAGGTAGGCCACCAGTCTGGAGAG
GATGAGAAGGAACCGGAAATCACAAGCTTAGACACTAATTCGGAAACGGA
TAACAAATTAGAAGGGGACAAAGAAGAGCCAGAAAAGGAATCCACCGGGA
ATTCCGGTGGCTTTGCGCCAACTCAAGTTCCTCAAACCGACAAAGTAGAC
CAATCGTCCGGACATATGGATACTTCGGACTCGTCTTCAGACTCTTCAGT
GACTCCCGATACTCGCCCATCAACTTCACTAGAGGAGGTCCTGGAAACTC
ACCCAACAAACAAAACTGAGGAACCAATGGGAGGATCGCCCGATTACCCG
GCTGATGGGCCCCAGGAGGACACCACAACTCCACCCCCAGAAGAAACAAC
CTTGGCACCACACAAGCCCCCAGTTGCAGATCCAGAACAGAAACCCCTAA
GCTGCTATTCCTGCATGTTCTGCAACAAAACGATCACCAATGAAACAAAG
TCAAACTGCGGCCCGATACCTGGCAAAAGGAATGGATGTCGCACCATACT
GCTCAACGATCCCAATGTCGTTCCGGGGAAGAAGTACTTCCTGCATCGGG
GCTGTGTATCCGAGTTAGATATGGAGCTATCTCGCTATTGCGCCGAGAAT
GAGAAGCTGTGTCCCACGTGCTACGAGGACAATTGTAATGTTCACAACAT
GACTGAATATGAAGTCACTCCGGGCTCTGCAGCAGTCACCCATCATCCGG
GGGTGCTATTCCTTATCTGGAGCATCGGTTTGGTTAGCTGGCAGGTGGCT
TTTTAAAAATCCACCCACGCTATTCTGAGTCATAACAATTAAAAAGTAAA
TGGAGATTGGCATACTTAAAAATCGATAGGTATGACTAATACTGAAAATC
GCAGATTATATCGCTGTCTGTCTAGATAAATTAGTTTATCTATGAAATAC
ATAAGCCCAATTAATATAAATTTCTGTTACGAAACTTAATCTATTTGCAG
CGCGTGGGGATTTTCGTTTTCTTTCTTAAATAGTGAAATATACTGTACTT
AATATGCAAATGTATATAAAATAAAGCATTTCAAGGCGAAACATTTGATT
GAGAAAAAAAAAAAAAAAAAAA

MIP13960.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18989749..18991101 1..1353 6645 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18991057..18992411 1..1355 6775 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18991057..18992411 1..1355 6775 100 Plus
Blast to na_te.dros performed on 2019-03-15 10:59:28 has no hits.

MIP13960.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:00:49 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18989749..18991101 1..1353 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-01 12:13:58 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG15169-RA 1..1038 19..1056 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:32:01 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG15169-RA 1..1038 19..1056 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:18:17 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG15169-RA 1..1038 19..1056 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-01 12:13:58 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG15169-RA 1..1353 1..1353 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:32:01 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG15169-RA 38..1390 1..1353 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:17 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
CG15169-RA 38..1390 1..1353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:49 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18991057..18992409 1..1353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:49 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18991057..18992409 1..1353 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:00:49 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18991057..18992409 1..1353 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:32:01 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18991057..18992409 1..1353 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:47:41 Download gff for MIP13960.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18991057..18992409 1..1353 100   Plus

MIP13960.hyp Sequence

Translation from 0 to 1055

> MIP13960.hyp
NRSVTTMRMRLLVIWISLTALLEWSRAQEDNIEEFSLSGGLAGEKSENSG
IEAGENDTESLGQSHLFLNTTQSPTDDPEPTQELSSIESQVGQVGHQSGE
DEKEPEITSLDTNSETDNKLEGDKEEPEKESTGNSGGFAPTQVPQTDKVD
QSSGHMDTSDSSSDSSVTPDTRPSTSLEEVLETHPTNKTEEPMGGSPDYP
ADGPQEDTTTPPPEETTLAPHKPPVADPEQKPLSCYSCMFCNKTITNETK
SNCGPIPGKRNGCRTILLNDPNVVPGKKYFLHRGCVSELDMELSRYCAEN
EKLCPTCYEDNCNVHNMTEYEVTPGSAAVTHHPGVLFLIWSIGLVSWQVA
F*

MIP13960.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15169-PA 345 CG15169-PA 1..345 7..351 1855 100 Plus

MIP13960.pep Sequence

Translation from 0 to 1055

> MIP13960.pep
NRSVTTMRMRLLVIWISLTALLEWSRAQEDNIEEFSLSGGLAGEKSENSG
IEAGENDTESLGQSHLFLNTTQSPTDDPEPTQELSSIESQVGQVGHQSGE
DEKEPEITSLDTNSETDNKLEGDKEEPEKESTGNSGGFAPTQVPQTDKVD
QSSGHMDTSDSSSDSSVTPDTRPSTSLEEVLETHPTNKTEEPMGGSPDYP
ADGPQEDTTTPPPEETTLAPHKPPVADPEQKPLSCYSCMFCNKTITNETK
SNCGPIPGKRNGCRTILLNDPNVVPGKKYFLHRGCVSELDMELSRYCAEN
EKLCPTCYEDNCNVHNMTEYEVTPGSAAVTHHPGVLFLIWSIGLVSWQVA
F*

MIP13960.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15261-PA 341 GF15261-PA 1..332 7..347 352 33.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21144-PA 347 GG21144-PA 1..347 7..351 1219 73.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15169-PA 345 CG15169-PA 1..345 7..351 1855 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18502-PA 369 GL18502-PA 1..369 7..351 248 28.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13545-PA 338 GA13545-PA 1..338 7..351 245 30.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17306-PA 483 GM17306-PA 1..326 7..344 1489 85.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24168-PA 343 GD24168-PA 1..343 7..351 1518 91.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23890-PA 282 GK23890-PA 1..282 7..349 164 27.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13217-PA 361 GE13217-PA 1..355 7..351 1264 72.3 Plus