Clone MIP13969 Report

Search the DGRC for MIP13969

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:139
Well:69
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG15905-RB
Protein status:MIP13969.pep: gold
Sequenced Size:1011

Clone Sequence Records

MIP13969.complete Sequence

1011 bp assembled on 2009-09-28

GenBank Submission: BT099875.1

> MIP13969.complete
CGCGGCTTCAAGAAGAACGGACGTTCTTTCAGCAGAGTTTCTTGACGTGC
GCCCTTAGAACTGGTTTCAATTTGAAAATGCTGCTGATATCACTTACGCT
GATGGCTTTTGGCCTGGCCCAAACGCTGCCCATCGAGGAGGCCGAAACGC
CGACGACCAGCGAAATGCCGGATTCAGGGCGAGTGGTTTTCGATCAGCGA
CAGACTGGCAGATTCAACATCCACGTTAGCATCAAGGATGTGGCCATCAT
CGAGGTGGGCCAGAATGGACTGGCCGAGGAGACGTATAACGATGAGGAGG
ATTACTACTATGATGACAGTGCGTTGACCGTCAAACCGATCAAGCTAACT
ACAGGGACCAGTAGCACCACAACAACGAGCACCACATCGGCCACCCTGCC
AGAGAGCACTGTATCTACAGTGGCTCCTACTACCGAAGCCACGCAGCTGA
ATACAAGCTTAAATCTGTTGGCTGACATTGCGGCCAGTGGTATAACGAAG
CCCAAGTCCAGACTAAACAATCTGATGATTGTAGAGACGCCAATCGGCGG
TCTAACGAAGCCCTTGCACCACCCACTTCATGCTCGATCCAAGGATATAC
CCAGTATGGCTGCAGCGGCACCAACTGCTTTAATTACGCCACCCACTTTG
CGCGAGAACATTGAGTACACGCCGCCCAAAGGTCACAACTCGCCCATTTT
CAAGGTGAAAGTTCAACGATCTTCGGTGCCGGCTACCAAGAAACCCGCTC
GCTGCCGAAATCATCAGGTGCGAGATGCCCAGGGCAAGTGCACCGACTCG
ATCTACAGAAAGCTGTACAGCATGCTGATGGGGATGAATTTTCCTTTTTT
GGCAGCCGCAAATGCCGCAGAAAGTGCTTGATGACTTAACAGTTTTAACT
ACCATATAGTTTAACTCAGACATAGAGTTTAAGTGCCACTAATTGGATCT
TAGCCATTGGCGTGAAATACATTGACTGAAAGCCAGTAAAAAAAAAAAAA
AAAAAAAAAAA

MIP13969.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15905.b 1163 CG15905.b 71..1060 1..990 4950 100 Plus
CG15905.a 1112 CG15905.a 23..1009 1..990 4880 99.6 Plus
CG15905.c 1167 CG15905.c 1..794 12..805 3970 100 Plus
CG15905.c 1167 CG15905.c 883..1067 806..990 925 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 15533983..15534517 805..277 2445 97.6 Minus
chr2R 21145070 chr2R 15534603..15534881 279..1 1395 100 Minus
chr2R 21145070 chr2R 15533713..15533894 987..806 910 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:15:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19646753..19647281 805..277 2645 100 Minus
2R 25286936 2R 19647367..19647645 279..1 1395 100 Minus
2R 25286936 2R 19646480..19646664 990..806 925 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 19647952..19648480 805..277 2645 100 Minus
2R 25260384 2R 19648566..19648844 279..1 1395 100 Minus
2R 25260384 2R 19647679..19647863 990..806 925 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:00:06 has no hits.

MIP13969.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:01:26 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 15533713..15533894 806..987 100 <- Minus
chr2R 15533983..15534515 279..805 97 <- Minus
chr2R 15534604..15534881 1..278 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:48 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15905-RA 1..729 78..806 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:34:44 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15905-RB 1..804 78..881 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:33:15 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15905-RB 1..804 78..881 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:39:24 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15905-RB 1..804 78..881 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-28 11:37:13 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15905-RA 1..729 78..806 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:34:44 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15905-RB 1..987 1..987 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:33:15 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15905-RB 1..987 1..987 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:24 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
CG15905-RB 1..987 1..987 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:01:26 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19646483..19646664 806..987 100 <- Minus
2R 19646753..19647279 279..805 100 <- Minus
2R 19647368..19647645 1..278 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:01:26 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19646483..19646664 806..987 100 <- Minus
2R 19646753..19647279 279..805 100 <- Minus
2R 19647368..19647645 1..278 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:01:26 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19646483..19646664 806..987 100 <- Minus
2R 19646753..19647279 279..805 100 <- Minus
2R 19647368..19647645 1..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:33:15 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15533988..15534169 806..987 100 <- Minus
arm_2R 15534258..15534784 279..805 100 <- Minus
arm_2R 15534873..15535150 1..278 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:18:33 Download gff for MIP13969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19647952..19648478 279..805 100 <- Minus
2R 19648567..19648844 1..278 100   Minus
2R 19647682..19647863 806..987 100 <- Minus

MIP13969.hyp Sequence

Translation from 2 to 880

> MIP13969.hyp
RLQEERTFFQQSFLTCALRTGFNLKMLLISLTLMAFGLAQTLPIEEAETP
TTSEMPDSGRVVFDQRQTGRFNIHVSIKDVAIIEVGQNGLAEETYNDEED
YYYDDSALTVKPIKLTTGTSSTTTTSTTSATLPESTVSTVAPTTEATQLN
TSLNLLADIAASGITKPKSRLNNLMIVETPIGGLTKPLHHPLHARSKDIP
SMAAAAPTALITPPTLRENIEYTPPKGHNSPIFKVKVQRSSVPATKKPAR
CRNHQVRDAQGKCTDSIYRKLYSMLMGMNFPFLAAANAAESA*

MIP13969.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15905-PB 267 CG15905-PB 1..267 26..292 1354 100 Plus
CG15905-PC 242 CG15905-PC 1..242 26..267 1229 100 Plus

MIP13969.pep Sequence

Translation from 2 to 880

> MIP13969.pep
RLQEERTFFQQSFLTCALRTGFNLKMLLISLTLMAFGLAQTLPIEEAETP
TTSEMPDSGRVVFDQRQTGRFNIHVSIKDVAIIEVGQNGLAEETYNDEED
YYYDDSALTVKPIKLTTGTSSTTTTSTTSATLPESTVSTVAPTTEATQLN
TSLNLLADIAASGITKPKSRLNNLMIVETPIGGLTKPLHHPLHARSKDIP
SMAAAAPTALITPPTLRENIEYTPPKGHNSPIFKVKVQRSSVPATKKPAR
CRNHQVRDAQGKCTDSIYRKLYSMLMGMNFPFLAAANAAESA*

MIP13969.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13173-PA 264 GF13173-PA 1..263 26..291 853 68 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20897-PA 243 GG20897-PA 1..242 26..267 829 78.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23010-PA 268 GH23010-PA 7..259 26..263 414 48.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15905-PB 267 CG15905-PB 1..267 26..292 1354 100 Plus
CG15905-PC 242 CG15905-PC 1..242 26..267 1229 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21077-PA 313 GI21077-PA 12..298 36..280 422 44.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11729-PA 299 GL11729-PA 1..299 26..292 759 58.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14016-PB 268 GA14016-PB 1..268 26..292 781 62.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19820-PA 283 GM19820-PA 1..251 26..273 1118 94.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25312-PA 244 GD25312-PA 1..244 26..267 1216 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20923-PA 250 GJ20923-PA 2..241 24..263 491 49.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15697-PA 288 GK15697-PA 4..267 26..280 463 47.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13837-PA 242 GE13837-PA 1..241 26..267 903 80 Plus