Clone MIP14027 Report

Search the DGRC for MIP14027

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:140
Well:27
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptHsc20-RA
Protein status:MIP14027.pep: gold
Sequenced Size:938

Clone Sequence Records

MIP14027.complete Sequence

938 bp assembled on 2009-10-12

GenBank Submission: BT100022.1

> MIP14027.complete
AAGGCTTCGATTGTGTATATCATTCAGTTAAATTTATTGTAGAAAATGAG
TAGAGTTATTAATGGCTTTAAAAGTGCTGTAAAAGCTACAAATTATACAC
CGCTTGTTAGAAATGCAGCACAATTTAATCAATTCCAGTTGCCAGAAATA
CGGAAATTTTCAGTTGAATCTTCGCCGGCTTGTTGGAATTGCCAAAAGAA
ATCGGAATTAAAGCAGAATATGATATGTTCGGACTGTGGACACTTGCAGG
ATGTTAACTCAGGAATAAATTACTTTAAACTGCTCAGCTTTCCCATTCAA
TTTTCTTTGGAGTCCCAGAAGTTGACAAGAAGTTTTCGCCAGTTGCAGAC
CATTGTGCATCCCGATAAATATAGTAATAAAACCTCACGGGAGCAAACAA
ACTCCTCAGACTGGAGTTCCCTCATCAACAAGGCATATAAAACGCTTTCC
ACGCCCATAGATCGTGGTCAGTACCTTCTTCAACTGGAGGGCGAACAGAT
GCCGCAGGATAATAGCGCTCTTAACAAAGAGTTTCTCATGGCCATGATGG
AGCGGAACGAGGAGGTGGAGGATGCGGAAGACACCCAAACGCTGGAGAAT
TTAAATATTCAGCTCATCAAGGAACTGGAGGAGATGGCCCGGAAGTTAAA
TGCCCTTTTCGATAGCAAAGATCTTTCGGGAGTCAAAGAAACCCTCGTAG
AGATGAAGTACCTGCTGAGTATTCAGAACAGCATTAAACAGAAGCAACAA
AGTTTGCTGGGCAGCTGAATTGGCATTAATCGACTTGGCAATCGGTTCTG
ATCGCACACACACACGTCCGCCTGTTGCTATCTATCAGCTGTTAAGTAAA
CAATAACACAGACTTCGTTTGTTTTATAATGTGAATAAAAATCGCGACTG
AACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP14027.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG34246-RA 799 CG34246-RA 32..799 1..768 3840 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16223327..16223849 381..903 2555 99.2 Plus
chr3L 24539361 chr3L 16222835..16223101 1..267 1335 100 Plus
chr3L 24539361 chr3L 16223154..16223266 268..380 565 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:15:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16233643..16234166 381..904 2620 100 Plus
3L 28110227 3L 16233151..16233417 1..267 1335 100 Plus
3L 28110227 3L 16233470..16233582 268..380 565 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16226743..16227266 381..904 2620 100 Plus
3L 28103327 3L 16226251..16226517 1..267 1335 100 Plus
3L 28103327 3L 16226570..16226682 268..380 565 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:55:39 has no hits.

MIP14027.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:56:32 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16222835..16223101 1..267 100 -> Plus
chr3L 16223154..16223266 268..380 100 -> Plus
chr3L 16223327..16223849 381..903 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:57:33 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
CG34246-RA 1..723 46..768 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:43:12 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
CG34246-RA 1..723 46..768 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:02:13 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc20-RA 1..723 46..768 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:21 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc20-RA 1..723 46..768 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-12 11:54:26 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
CG34246-RA 32..799 1..768 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:43:12 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
CG34246-RA 32..934 1..903 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:13 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc20-RA 25..927 1..903 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:21 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
Hsc20-RA 25..927 1..903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:32 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16233151..16233417 1..267 100 -> Plus
3L 16233470..16233582 268..380 100 -> Plus
3L 16233643..16234165 381..903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:32 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16233151..16233417 1..267 100 -> Plus
3L 16233470..16233582 268..380 100 -> Plus
3L 16233643..16234165 381..903 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:56:32 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16233151..16233417 1..267 100 -> Plus
3L 16233470..16233582 268..380 100 -> Plus
3L 16233643..16234165 381..903 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:13 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16226251..16226517 1..267 100 -> Plus
arm_3L 16226570..16226682 268..380 100 -> Plus
arm_3L 16226743..16227265 381..903 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:24:13 Download gff for MIP14027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16226251..16226517 1..267 100 -> Plus
3L 16226570..16226682 268..380 100 -> Plus
3L 16226743..16227265 381..903 100   Plus

MIP14027.pep Sequence

Translation from 45 to 767

> MIP14027.pep
MSRVINGFKSAVKATNYTPLVRNAAQFNQFQLPEIRKFSVESSPACWNCQ
KKSELKQNMICSDCGHLQDVNSGINYFKLLSFPIQFSLESQKLTRSFRQL
QTIVHPDKYSNKTSREQTNSSDWSSLINKAYKTLSTPIDRGQYLLQLEGE
QMPQDNSALNKEFLMAMMERNEEVEDAEDTQTLENLNIQLIKELEEMARK
LNALFDSKDLSGVKETLVEMKYLLSIQNSIKQKQQSLLGS*

MIP14027.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24163-PA 182 GF24163-PA 1..182 59..240 735 80.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15965-PA 261 GG15965-PA 134..261 113..240 584 88.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15859-PA 174 GH15859-PA 8..173 75..240 649 73.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc20-PA 240 CG34246-PA 1..240 1..240 1219 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12642-PA 179 GI12642-PA 1..177 59..240 673 68.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17838-PA 241 GL17838-PA 1..240 1..240 807 66.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28504-PA 241 GA28504-PA 1..240 1..240 798 66.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25599-PA 182 GM25599-PA 1..182 59..240 928 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14607-PA 182 GD14607-PA 1..182 59..240 932 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12761-PA 184 GJ12761-PA 19..184 75..240 620 69.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16550-PA 263 GK16550-PA 80..261 59..240 605 64.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23117-PA 261 GE23117-PA 134..261 113..240 583 89.8 Plus
Dyak\GE19533-PA 261 GE19533-PA 134..261 113..240 578 89.1 Plus

MIP14027.hyp Sequence

Translation from 45 to 767

> MIP14027.hyp
MSRVINGFKSAVKATNYTPLVRNAAQFNQFQLPEIRKFSVESSPACWNCQ
KKSELKQNMICSDCGHLQDVNSGINYFKLLSFPIQFSLESQKLTRSFRQL
QTIVHPDKYSNKTSREQTNSSDWSSLINKAYKTLSTPIDRGQYLLQLEGE
QMPQDNSALNKEFLMAMMERNEEVEDAEDTQTLENLNIQLIKELEEMARK
LNALFDSKDLSGVKETLVEMKYLLSIQNSIKQKQQSLLGS*

MIP14027.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Hsc20-PA 240 CG34246-PA 1..240 1..240 1219 100 Plus