Clone MIP14090 Report

Search the DGRC for MIP14090

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:140
Well:90
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptLysD-RA
Protein status:MIP14090.pep: gold
Sequenced Size:518

Clone Sequence Records

MIP14090.complete Sequence

518 bp assembled on 2009-09-28

GenBank Submission: BT099853.1

> MIP14090.complete
ATTAGTTTCAATTCGAATCATGAAGGCTTTCATCGTTCTGGTTGCCCTGG
CCTGTGCCGCCCCAGCTTTCGGTCGCACCATGGACCGTTGCTCCCTGGCC
CGCGAGATGTCCAACCTGGGCGTTCCTCGTGACCAATTGGCTCGTTGGGC
CTGTATTGCCGAGCACGAGTCCTCCTACCGCACCGGAGTGGTTGGTCCCG
AGAACTACAACGGCTCCAACGACTACGGAATCTTCCAGATCAACGACTAC
TACTGGTGCGCTCCTCCCAGCGGTCGCTTCTCCTACAACGAATGCGGATT
GAGCTGCAACGCTCTCCTGACCGACGACATCACCCACTCCGTCCGTTGTG
CCCAGAAGGTCCTCAGCCAGCAGGGATGGTCCGCCTGGTCCACCTGGCAC
TACTGCAGCGGATGGTTGCCGTCCATCGATGACTGCTTCTAAACTGATTT
TGACCCCGATTAAAACGATTGCGCACCAGTAAAAAAAGAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

MIP14090.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
LysD-RA 480 LysD-RA 1..480 1..480 2400 100 Plus
LysB-RA 498 LysB-RA 23..476 19..472 1955 95.3 Plus
LysE-RA 490 LysE-RA 29..474 20..465 1870 94.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1210222..1210703 481..1 2360 99.8 Minus
chr3L 24539361 chr3L 1212468..1212913 20..465 1930 95.5 Plus
chr3L 24539361 chr3L 1206915..1207368 19..472 1925 94.9 Plus
chr3L 24539361 chr3L 1209975..1210232 4..261 1110 95.3 Plus
chr3L 24539361 chr3L 1227338..1227729 71..465 950 83.3 Plus
chr3L 24539361 chr3L 1194409..1194776 438..71 640 78.3 Minus
chr3L 24539361 chr3L 1217799..1218120 413..92 635 79.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:16:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1210716..1211196 481..1 2405 100 Minus
3L 28110227 3L 1207393..1207846 19..472 1955 95.4 Plus
3L 28110227 3L 1212952..1213397 20..465 1870 94.6 Plus
3L 28110227 3L 1210469..1210726 4..261 1095 95 Plus
3L 28110227 3L 1227826..1228217 71..465 950 83.3 Plus
3L 28110227 3L 1218286..1218607 413..92 635 79.8 Minus
3L 28110227 3L 1194874..1195241 438..71 625 78 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1210716..1211196 481..1 2405 100 Minus
3L 28103327 3L 1207393..1207846 19..472 1955 95.3 Plus
3L 28103327 3L 1212952..1213397 20..465 1870 94.6 Plus
3L 28103327 3L 1228023..1228217 271..465 690 90.2 Plus
3L 28103327 3L 1218286..1218607 413..92 635 79.8 Minus
3L 28103327 3L 1210469..1210600 4..135 630 98.4 Plus
3L 28103327 3L 1210614..1210726 149..261 535 98.2 Plus
3L 28103327 3L 1227826..1228014 71..259 360 79.3 Plus
3L 28103327 3L 1195120..1195241 192..71 310 83.6 Minus
3L 28103327 3L 1194874..1195034 438..278 295 78.8 Minus
Blast to na_te.dros performed on 2019-03-16 07:35:38 has no hits.

MIP14090.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:36:38 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1210222..1210703 1..481 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:35 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
LysD-RA 1..423 20..442 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:34:03 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
LysD-RA 1..423 20..442 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:36 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
LysD-RA 1..423 20..442 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:10 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
LysD-RA 1..423 20..442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-28 10:34:05 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
LysD-RA 1..472 1..472 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:34:02 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
LysD-RA 1..480 1..480 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:36 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
LysD-RA 1..480 1..480 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:10 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
LysD-RA 1..480 1..480 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:38 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1210716..1211196 1..481 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:38 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1210716..1211196 1..481 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:38 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1210716..1211196 1..481 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:36 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1210716..1211196 1..481 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:18:07 Download gff for MIP14090.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1210716..1211196 1..481 100   Minus

MIP14090.hyp Sequence

Translation from 0 to 441

> MIP14090.hyp
LVSIRIMKAFIVLVALACAAPAFGRTMDRCSLAREMSNLGVPRDQLARWA
CIAEHESSYRTGVVGPENYNGSNDYGIFQINDYYWCAPPSGRFSYNECGL
SCNALLTDDITHSVRCAQKVLSQQGWSAWSTWHYCSGWLPSIDDCF*

MIP14090.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
LysD-PA 140 CG9118-PA 1..140 7..146 786 100 Plus
LysC-PA 140 CG9111-PA 1..140 7..146 777 98.6 Plus
LysB-PB 140 CG1179-PB 1..140 7..146 770 98.6 Plus
LysB-PA 140 CG1179-PA 1..140 7..146 770 98.6 Plus
LysE-PA 140 CG1180-PA 1..140 7..146 755 96.4 Plus

MIP14090.pep Sequence

Translation from 1 to 441

> MIP14090.pep
LVSIRIMKAFIVLVALACAAPAFGRTMDRCSLAREMSNLGVPRDQLARWA
CIAEHESSYRTGVVGPENYNGSNDYGIFQINDYYWCAPPSGRFSYNECGL
SCNALLTDDITHSVRCAQKVLSQQGWSAWSTWHYCSGWLPSIDDCF*

MIP14090.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10072-PA 140 GF10072-PA 1..140 7..146 739 97.9 Plus
Dana\GF24436-PA 140 GF24436-PA 1..140 7..146 730 96.4 Plus
Dana\GF10073-PA 140 GF10073-PA 1..140 7..146 615 88.6 Plus
Dana\GF24437-PA 140 GF24437-PA 1..140 7..146 593 87.2 Plus
Dana\GF10070-PA 141 GF10070-PA 1..141 7..146 554 71.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14617-PA 140 GG14617-PA 1..140 7..146 738 97.1 Plus
Dere\GG19822-PA 140 GG19822-PA 1..140 7..146 738 97.1 Plus
Dere\GG14762-PA 140 GG14762-PA 1..140 7..146 738 97.1 Plus
Dere\GG14759-PA 140 GG14759-PA 1..140 7..146 738 97.1 Plus
Dere\GG19823-PA 140 GG19823-PA 1..140 7..146 738 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15486-PA 140 GH15486-PA 1..140 7..146 606 85 Plus
Dgri\GH15485-PA 140 GH15485-PA 1..140 7..146 606 85 Plus
Dgri\GH15987-PA 140 GH15987-PA 1..140 7..146 598 84.3 Plus
Dgri\GH15989-PA 140 GH15989-PA 1..140 7..146 598 84.3 Plus
Dgri\GH15988-PA 143 GH15988-PA 1..143 7..146 506 68.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
LysD-PA 140 CG9118-PA 1..140 7..146 786 100 Plus
LysB-PB 140 CG1179-PB 1..140 7..146 770 98.6 Plus
LysB-PA 140 CG1179-PA 1..140 7..146 770 98.6 Plus
LysE-PA 140 CG1180-PA 1..140 7..146 755 96.4 Plus
LysS-PA 140 CG1165-PA 1..140 7..146 623 80.9 Plus
LysX-PA 142 CG9120-PA 1..141 7..146 596 75.9 Plus
LysP-PA 141 CG9116-PA 1..141 7..146 595 76.6 Plus
CG30062-PB 171 CG30062-PB 23..151 21..146 338 47.3 Plus
CG7798-PA 148 CG7798-PA 4..140 11..146 334 45.3 Plus
CG8492-PD 1360 CG8492-PD 438..552 24..133 234 41 Plus
CG8492-PD 1360 CG8492-PD 599..724 28..146 228 38.3 Plus
CG8492-PD 1360 CG8492-PD 6..133 13..135 213 36.6 Plus
CG8492-PD 1360 CG8492-PD 184..297 24..132 200 35.3 Plus
CG11159-PA 146 CG11159-PA 28..146 25..145 187 35 Plus
CG16756-PA 152 CG16756-PA 18..137 12..135 182 34.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16761-PA 140 GI16761-PA 1..140 7..146 623 88.6 Plus
Dmoj\GI16643-PA 140 GI16643-PA 1..140 7..146 623 88.6 Plus
Dmoj\GI16762-PA 140 GI16762-PA 1..140 7..146 621 87.9 Plus
Dmoj\GI16637-PA 140 GI16637-PA 1..140 7..146 611 86.4 Plus
Dmoj\GI16638-PA 140 GI16638-PA 1..140 7..146 611 86.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16159-PA 140 GL16159-PA 1..140 7..146 661 93.6 Plus
Dper\GL16083-PA 140 GL16083-PA 1..140 7..146 661 93.6 Plus
Dper\GL14512-PA 140 GL14512-PA 1..140 7..146 661 93.6 Plus
Dper\GL16156-PA 140 GL16156-PA 1..140 7..146 648 93.6 Plus
Dper\GL16691-PA 140 GL16691-PA 1..140 7..146 648 93.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28405-PA 140 GA28405-PA 1..140 7..146 714 93.6 Plus
Dpse\GA28406-PA 140 GA28406-PA 1..140 7..146 669 95.7 Plus
Dpse\GA28485-PA 140 GA28485-PA 1..140 7..146 668 95 Plus
Dpse\GA28409-PA 140 GA28409-PA 1..140 7..146 661 93.6 Plus
Dpse\GA28483-PA 140 GA28483-PA 1..140 7..146 650 93.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14382-PA 140 GM14382-PA 1..140 7..146 742 98.6 Plus
Dsec\GM14380-PA 140 GM14380-PA 1..140 7..146 742 97.9 Plus
Dsec\GM14229-PA 140 GM14229-PA 1..140 7..146 742 97.9 Plus
Dsec\GM14378-PA 140 GM14378-PA 1..140 7..146 740 97.1 Plus
Dsec\GM14233-PA 149 GM14233-PA 44..130 60..146 389 80.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13594-PA 140 GD13594-PA 1..140 7..146 742 98.6 Plus
Dsim\GD13593-PA 140 GD13593-PA 1..140 7..146 740 97.1 Plus
Dsim\GD17618-PA 140 GD17618-PA 1..140 7..146 599 80.9 Plus
Dsim\GD17617-PA 140 GD17617-PA 1..140 7..146 599 80.9 Plus
Dsim\GD13493-PA 160 GD13493-PA 1..141 7..146 590 76.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12508-PA 140 GJ12508-PA 1..140 7..146 692 91.4 Plus
Dvir\GJ12507-PA 140 GJ12507-PA 1..140 7..146 692 91.4 Plus
Dvir\GJ12895-PA 140 GJ12895-PA 1..140 7..146 675 89.3 Plus
Dvir\GJ12893-PA 140 GJ12893-PA 1..140 7..146 667 87.1 Plus
Dvir\GJ12894-PA 143 GJ12894-PA 1..142 7..146 598 79.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21106-PA 141 GK21106-PA 15..141 20..146 651 92.9 Plus
Dwil\GK21095-PA 141 GK21095-PA 15..141 20..146 651 92.9 Plus
Dwil\GK12154-PA 141 GK12154-PA 1..141 7..146 648 90.1 Plus
Dwil\GK21084-PA 141 GK21084-PA 1..141 7..146 648 90.1 Plus
Dwil\GK12260-PA 141 GK12260-PA 1..141 7..146 648 90.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20977-PA 140 GE20977-PA 1..140 7..146 739 97.1 Plus
Dyak\GE21124-PA 140 GE21124-PA 1..140 7..146 739 97.1 Plus
Dyak\GE21123-PA 140 GE21123-PA 1..140 7..146 680 96.4 Plus
Dyak\GE21125-PA 140 GE21125-PA 1..140 7..146 677 95.7 Plus
Dyak\GE20981-PA 142 GE20981-PA 1..141 7..146 600 80.1 Plus