Clone MIP14266 Report

Search the DGRC for MIP14266

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:142
Well:66
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG9692-RB
Protein status:MIP14266.pep: gold
Sequenced Size:1411

Clone Sequence Records

MIP14266.complete Sequence

1411 bp assembled on 2009-10-08

GenBank Submission: BT099986.1

> MIP14266.complete
TATCAGACTAGTGACTGTCGAATCGTGGAGACTCAAAGAAGAAAATGAAA
TCCCAGTACACCCGAAAAGCCAAACCAGAGCCAGCAAAAACACCTACAGC
ACTAGAGCCCAAGACTAATACTAAACTGGCGGGTCCAAAATCGAGATCCA
CGACGGTGGTGGTGAAGCGCCGGAATCGCCGAAATTCCATTGATGGAGCA
GCAGGAGGCTCCACTAGCGGCAATTCCGAGGGGGGTAATTCCAGAGCAGC
TTTCTCCGGAAGTGGTTATTCGGCAGGAAATAATTCCGAAGGAGGTACAT
CGACTGGACGCAAGTCCATTGGTAGTAAATCCAGAGGAACTTATTTCCGA
GCAAGTTATACCGGTGCTGGTAGTTCCGGATCTGAGAATAGGTCGCCGCC
CCAGCTTGTTCCGGTGCGGCGTAAGCCCCTCAGTGATTACATGATGCTGG
AGGAACAGCCATCTACCTCCAGTCGTCCAACCACATCCTCTTCCTATTTA
TCGGACCAGGATCGTCCGATGAGTTATGCCGCTGCGGTGGAATCACTCCC
CATATCTAGGCTCAAGGTCAAGGTGGTGCTATCCCCACGTCTCAAGCGGT
CCGGCAATCAGCCGCCGATCAAGCGGCCGAACCGTAAAAATTCACCCAAC
GCCAAGGTCAAATCGATCCCACCGACGCAGTCTAAGACACACAATATCCA
GCTAAATCCGAAGCGCAATATGGCCCAGGTCCCGCCCCAATCCCGCGATG
CCACCGTGAGTAACAAGTCGAATAACTTAGCGCCACCTGGCGGAAACAAA
AAGAAACCCAAGTCGAAGAAATCCCAAAAGCTAAAGCAAAATCAACCACG
ATCAGAAGCTACTTCTCCGGAGCAGCCAGCCTCACCAAAGTCTTTATCAC
CTTGTGATAATCAAAGTTCTCCGCCGAAGTTCTCCGATTCCAACGCCTAT
CTGGACCATCACCATGAGAAAATGCAGCGCTTTCTGGCTGAGCAAACGGC
TGGTCAAAAGCCGTATCCCAACCGTGGCCAAGTGAAGACCTGCAAACAAA
ATGTCCAGCTGCCAACCAATCGATCCCTCTTCGACTTCGATGAGCGACTA
TTCAGACGCGGGGATCTCGAGTCGGCCGCATTTTTGGCCCAGAACCAGGC
CATGATACGCATGTGGCTGAACCCTAATATGCTGATCTCCTAGGCAGCTC
AATCAATTAACAATCAAAAATTGATCATTTAGTTTTATATGTGTTTGAAC
TTGTTATGTTGCATCAAAATTCTAATTCAAATCTTATGAGCAATCTCTGT
GGCACGTAGACTTACGACCTAAACTATGGAAGCCCCTGGAGATTGAACTG
TATTTTGAATATACATTGGCAAATAAAAAAGTTATTTGATTTCAAAAAAA
AAAAAAAAAAA

MIP14266.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9692-RB 1464 CG9692-RB 66..1460 1..1395 6975 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16694837..16696155 75..1393 6580 99.9 Plus
chr3L 24539361 chr3L 16694700..16694773 1..74 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:16:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16705110..16706430 75..1395 6605 100 Plus
3L 28110227 3L 16704973..16705046 1..74 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16698210..16699530 75..1395 6605 100 Plus
3L 28103327 3L 16698073..16698146 1..74 370 100 Plus
Blast to na_te.dros performed 2019-03-16 02:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 650..691 1342..1384 122 79.1 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 3760..3831 1274..1199 117 67.1 Minus

MIP14266.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:02:08 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16694700..16694773 1..74 100 -> Plus
chr3L 16694837..16696155 75..1393 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:57:07 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1149 45..1193 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:41:52 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1149 45..1193 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:57 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1149 45..1193 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:55:27 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1149 45..1193 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-08 17:22:06 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1349 45..1393 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:41:52 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1349 45..1393 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:57 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1393 1..1393 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:55:27 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
CG9692-RB 1..1393 1..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:08 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16704973..16705046 1..74 100 -> Plus
3L 16705110..16706428 75..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:08 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16704973..16705046 1..74 100 -> Plus
3L 16705110..16706428 75..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:02:08 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16704973..16705046 1..74 100 -> Plus
3L 16705110..16706428 75..1393 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:57 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16698073..16698146 1..74 100 -> Plus
arm_3L 16698210..16699528 75..1393 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:23:22 Download gff for MIP14266.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16698210..16699528 75..1393 100   Plus
3L 16698073..16698146 1..74 100 -> Plus

MIP14266.hyp Sequence

Translation from 44 to 1192

> MIP14266.hyp
MKSQYTRKAKPEPAKTPTALEPKTNTKLAGPKSRSTTVVVKRRNRRNSID
GAAGGSTSGNSEGGNSRAAFSGSGYSAGNNSEGGTSTGRKSIGSKSRGTY
FRASYTGAGSSGSENRSPPQLVPVRRKPLSDYMMLEEQPSTSSRPTTSSS
YLSDQDRPMSYAAAVESLPISRLKVKVVLSPRLKRSGNQPPIKRPNRKNS
PNAKVKSIPPTQSKTHNIQLNPKRNMAQVPPQSRDATVSNKSNNLAPPGG
NKKKPKSKKSQKLKQNQPRSEATSPEQPASPKSLSPCDNQSSPPKFSDSN
AYLDHHHEKMQRFLAEQTAGQKPYPNRGQVKTCKQNVQLPTNRSLFDFDE
RLFRRGDLESAAFLAQNQAMIRMWLNPNMLIS*

MIP14266.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9692-PB 382 CG9692-PB 1..382 1..382 1973 100 Plus
CG9692-PC 250 CG9692-PC 1..250 133..382 1299 100 Plus

MIP14266.pep Sequence

Translation from 44 to 1192

> MIP14266.pep
MKSQYTRKAKPEPAKTPTALEPKTNTKLAGPKSRSTTVVVKRRNRRNSID
GAAGGSTSGNSEGGNSRAAFSGSGYSAGNNSEGGTSTGRKSIGSKSRGTY
FRASYTGAGSSGSENRSPPQLVPVRRKPLSDYMMLEEQPSTSSRPTTSSS
YLSDQDRPMSYAAAVESLPISRLKVKVVLSPRLKRSGNQPPIKRPNRKNS
PNAKVKSIPPTQSKTHNIQLNPKRNMAQVPPQSRDATVSNKSNNLAPPGG
NKKKPKSKKSQKLKQNQPRSEATSPEQPASPKSLSPCDNQSSPPKFSDSN
AYLDHHHEKMQRFLAEQTAGQKPYPNRGQVKTCKQNVQLPTNRSLFDFDE
RLFRRGDLESAAFLAQNQAMIRMWLNPNMLIS*

MIP14266.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11772-PA 286 GF11772-PA 16..286 159..382 274 33.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13571-PA 386 GG13571-PA 1..386 1..382 1369 76.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21556-PA 318 GH21556-PA 55..318 116..382 152 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9692-PB 382 CG9692-PB 1..382 1..382 1973 100 Plus
CG9692-PC 250 CG9692-PC 1..250 133..382 1299 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25650-PA 384 GM25650-PA 1..384 1..382 1629 90.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14654-PA 386 GD14654-PA 1..386 1..382 1611 88.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19868-PA 385 GE19868-PA 1..385 1..382 1280 74.3 Plus