Clone MIP14282 Report

Search the DGRC for MIP14282

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:142
Well:82
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptHe-RB
Protein status:MIP14282.pep: gold
Sequenced Size:656

Clone Sequence Records

MIP14282.complete Sequence

656 bp assembled on 2009-09-28

GenBank Submission: BT099873.1

> MIP14282.complete
ACTAAGTTTACATAAGTCACTAATATGCATAATTTTCAACTGACCGTCGT
TTTCCTGGCACTGTTCACTTTTACCAGTTCCTTTGGATACCGTTCTGAAC
ATCCGCACAGAAAACCAATACATAGCAACCGTCCATCTCCAACTACTACA
ATGACAACAGATTCAACTTCAACTAGCTTTATGACAACAGATTCAACCCC
AAGTGAAACGGAATCCACTTCGGATACATCTACTGAAGAAAGTACACAGA
TTTCTGACTTCACCGAAAGTTCAACCGAAAGTTCGACGACAGCAAAGATA
TTTTTAAAGGACAATGAGATTTCAAAACCAGAAAACAGCAACACTTTACT
TATCAGTGTGTATGGCATTGTAATTACCTTGGCTATTTTAGTTGCTCTAA
TATACTGCATTCGACGCCATTATGGTTCATATTCTGTGAAAGAGCAATGC
AAGCCCATTGAAAGTACCGCATATTTTAATAATATTAAATATTAAAATCA
TATTTAAATAATATTATCTAAAAACAAGGATTTAAATAATAACTTTCTTA
AAAACAAATTTGCATCCACTAAGTATTAAAATAATTTTTGGCACGAATCT
TAAAATATTTGAAATAAACATGACTCATTTATTTCCGACAAAAAAAAAAA
AAAAAA

MIP14282.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
He-RB 819 He-RB 179..819 1..641 3205 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13970846..13971361 639..124 2580 100 Minus
chr2L 23010047 chr2L 13971541..13971663 123..1 615 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:16:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13972094..13972611 641..124 2590 100 Minus
2L 23513712 2L 13972791..13972913 123..1 615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13972094..13972611 641..124 2590 100 Minus
2L 23513712 2L 13972791..13972913 123..1 615 100 Minus
Blast to na_te.dros performed 2019-03-16 01:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1446..1657 614..405 108 52.6 Minus

MIP14282.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:00:02 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13971541..13971663 1..123 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:55:47 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 1..471 25..495 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:33:56 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 1..471 25..495 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:12:47 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 1..471 25..495 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:53:24 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 1..471 25..495 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-28 11:27:53 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 35..673 1..639 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:33:56 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 35..673 1..639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:12:47 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 35..673 1..639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:53:24 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
He-RB 35..673 1..639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:02 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13972096..13972611 124..639 100 <- Minus
2L 13972791..13972913 1..123 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:02 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13972096..13972611 124..639 100 <- Minus
2L 13972791..13972913 1..123 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:00:02 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13972096..13972611 124..639 100 <- Minus
2L 13972791..13972913 1..123 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:12:47 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13972096..13972611 124..639 100 <- Minus
arm_2L 13972791..13972913 1..123 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:18:04 Download gff for MIP14282.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13972096..13972611 124..639 100 <- Minus
2L 13972791..13972913 1..123 100   Minus

MIP14282.hyp Sequence

Translation from 24 to 494

> MIP14282.hyp
MHNFQLTVVFLALFTFTSSFGYRSEHPHRKPIHSNRPSPTTTMTTDSTST
SFMTTDSTPSETESTSDTSTEESTQISDFTESSTESSTTAKIFLKDNEIS
KPENSNTLLISVYGIVITLAILVALIYCIRRHYGSYSVKEQCKPIESTAY
FNNIKY*

MIP14282.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
He-PC 156 CG31770-PC 1..156 1..156 798 100 Plus
He-PB 156 CG31770-PB 1..156 1..156 798 100 Plus

MIP14282.pep Sequence

Translation from 24 to 494

> MIP14282.pep
MHNFQLTVVFLALFTFTSSFGYRSEHPHRKPIHSNRPSPTTTMTTDSTST
SFMTTDSTPSETESTSDTSTEESTQISDFTESSTESSTTAKIFLKDNEIS
KPENSNTLLISVYGIVITLAILVALIYCIRRHYGSYSVKEQCKPIESTAY
FNNIKY*

MIP14282.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
He-PC 156 CG31770-PC 1..156 1..156 798 100 Plus
He-PB 156 CG31770-PB 1..156 1..156 798 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19546-PA 159 GM19546-PA 1..157 1..154 332 70.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22024-PA 159 GD22024-PA 1..157 1..154 332 70.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25225-PA 165 GE25225-PA 1..160 1..156 203 45.6 Plus