Clone MIP14440 Report

Search the DGRC for MIP14440

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:144
Well:40
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptOr43b-RA
Protein status:MIP14440.pep: gold
Sequenced Size:1427

Clone Sequence Records

MIP14440.complete Sequence

1427 bp assembled on 2010-02-02

GenBank Submission: BT120289.1

> MIP14440.complete
AAGCATTCCGAGCTCCTCCTATCGCCAGTTATATTATAGCCTTAAACATT
CGAAACTTTAGATGTTCGGACACTTTAAGCTCGTCTATCCGGCTCCTATA
TCGGAGCCCATACAGTCTAGGGATTCGAATGCATACATGATGGAGACGCT
GCGAAATTCGGGCTTGAATTTGAAGAACGATTTCGGTATAGGCCGCAAGA
TTTGGAGGGTGTTTTCGTTCACCTACAATATGGTGATACTTCCCGTAAGT
TTCCCAATCAACTATGTGATACATCTGGCGGAGTTCCCGCCGGAGCTGCT
GCTGCAATCCCTGCAACTGTGCCTCAACACTTGGTGCTTCGCTCTGAAGT
TCTTCACTCTGATCGTCTATACGCACCGCTTGGAGCTGGCCAACAAGCAC
TTTGACGAATTGGATAAGTACTGCGTGAAGCCGGCGGAGAAGCGCAAGGT
TCGCGACATGGTGGCCACTATTACAAGACTGTACCTGACCTTCGTCGTGG
TCTACGTCCTCTACGCCACCTCCACGCTACTGGACGGACTACTGCACCAC
CGTGTTCCCTACAATACGTACTATCCGTTCATAAACTGGCGAGTCGATCG
GACCCAGATGTACATCCAGAGTTTTCTGGAGTACTTCACCGTGGGTTATG
CCATATATGTGGCCACCGCCACCGATTCCTACCCTGTGATTTACGTGGCA
GCCCTGCGAACTCATATTCTCTTGCTCAAGGACCGTATCATTTACTTGGG
CGATCCCAGCAACGAGGGTAGCAGCGACCCGAGCTACATGTTTAAATCGT
TGGTGGATTGTATCAAGGCACACAGAACCATGCTAAATTTTTGTGATGCC
ATTCAACCAATCATCTCTGGCACGATATTTGCCCAATTCATCATATGCGG
ATCGATCCTGGGCATAATTATGATCAACATGGTATTGTTCGCTGATCAAT
CGACCCGATTCGGCATAGTCATCTACGTTATGGCCGTCCTTCTGCAGACT
TTTCCGCTTTGCTTCTACTGCAACGCCATCGTGGACGACTGCAAAGAACT
GGCCCACGCACTTTTCCATTCCGCCTGGTGGGTGCAGGACAAGCGATACC
AGCGGACTGTCATCCAGTTCCTGCAGAAACTGCAGCAGCCCATGACCTTC
ACCGCCATGAACATATTTAACATTAATTTGGCCACTAACATCAATGTAGC
CAAGTTCGCCTTCACCGTGTACGCCATCGCGAGCGGTATGAACCTGGACC
AAAAGTTAAGCATTAAGGAATAGAAAGGAATACTCAATACAATTGACCGC
ACCAGAGGTAAACGTACATAGTTTTATGAACTTAACACTTTTTTGCTTCG
TAGAATTATAATAATTGTATATGCATACAGCGAATTATGAATAAACATAA
TCTAGTTAAAACAAAAAAAAAAAAAAA

MIP14440.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Or43b-RA 1413 Or43b-RA 141..1413 1..1273 6365 100 Plus
lin19-RB 4006 lin19-RB 3464..3824 1198..838 1805 100 Minus
lin19-RB 4006 lin19-RB 3184..3403 1415..1196 1100 100 Minus
lin19.a 3244 lin19.a 3099..3244 1415..1270 730 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3809149..3809985 837..1 4155 99.8 Minus
chr2R 21145070 chr2R 3808493..3808853 1198..838 1790 99.7 Minus
chr2R 21145070 chr2R 3808216..3808432 1412..1196 1070 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:17:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7921768..7922604 837..1 4185 100 Minus
2R 25286936 2R 7921112..7921472 1198..838 1805 100 Minus
2R 25286936 2R 7920832..7921051 1415..1196 1100 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7922967..7923803 837..1 4185 100 Minus
2R 25260384 2R 7922311..7922671 1198..838 1805 100 Minus
2R 25260384 2R 7922031..7922250 1415..1196 1100 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:09:06 has no hits.

MIP14440.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:09:59 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3809149..3809985 1..837 99   Minus
chr2R 3808216..3808432 1196..1412 99 <- Minus
chr2R 3808496..3808853 838..1195 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-03 11:20:43 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
Or43b-RA 1..1212 62..1273 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:17:42 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
Or43b-RA 1..1212 62..1273 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:27:49 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
Or43b-RA 1..1212 62..1273 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:18 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
Or43b-RA 1..1212 62..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:20:42 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
Or43b-RA 1..1212 62..1273 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:17:41 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
Or43b-RA 1..1412 1..1412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:27:49 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
Or43b-RA 1..1412 1..1412 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:18 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
Or43b-RA 1..1412 1..1412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:59 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7920835..7921051 1196..1412 100 <- Minus
2R 7921115..7921472 838..1195 100 <- Minus
2R 7921768..7922604 1..837 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:59 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7920835..7921051 1196..1412 100 <- Minus
2R 7921115..7921472 838..1195 100 <- Minus
2R 7921768..7922604 1..837 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:09:59 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7920835..7921051 1196..1412 100 <- Minus
2R 7921115..7921472 838..1195 100 <- Minus
2R 7921768..7922604 1..837 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:27:49 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3808340..3808556 1196..1412 100 <- Minus
arm_2R 3808620..3808977 838..1195 100 <- Minus
arm_2R 3809273..3810109 1..837 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:07:06 Download gff for MIP14440.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7922034..7922250 1196..1412 100 <- Minus
2R 7922314..7922671 838..1195 100 <- Minus
2R 7922967..7923803 1..837 100   Minus

MIP14440.hyp Sequence

Translation from 61 to 1272

> MIP14440.hyp
MFGHFKLVYPAPISEPIQSRDSNAYMMETLRNSGLNLKNDFGIGRKIWRV
FSFTYNMVILPVSFPINYVIHLAEFPPELLLQSLQLCLNTWCFALKFFTL
IVYTHRLELANKHFDELDKYCVKPAEKRKVRDMVATITRLYLTFVVVYVL
YATSTLLDGLLHHRVPYNTYYPFINWRVDRTQMYIQSFLEYFTVGYAIYV
ATATDSYPVIYVAALRTHILLLKDRIIYLGDPSNEGSSDPSYMFKSLVDC
IKAHRTMLNFCDAIQPIISGTIFAQFIICGSILGIIMINMVLFADQSTRF
GIVIYVMAVLLQTFPLCFYCNAIVDDCKELAHALFHSAWWVQDKRYQRTV
IQFLQKLQQPMTFTAMNIFNINLATNINVAKFAFTVYAIASGMNLDQKLS
IKE*

MIP14440.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
Or43b-PA 403 CG17853-PA 1..403 1..403 2113 100 Plus
Or42a-PA 406 CG17250-PA 7..403 5..403 753 36.8 Plus
Or42b-PA 399 CG12754-PA 3..395 5..398 699 36.5 Plus
Or59b-PA 398 CG3569-PA 4..396 5..398 679 34.5 Plus
Or22b-PA 397 CG4231-PA 6..395 5..398 632 34.3 Plus

MIP14440.pep Sequence

Translation from 61 to 1272

> MIP14440.pep
MFGHFKLVYPAPISEPIQSRDSNAYMMETLRNSGLNLKNDFGIGRKIWRV
FSFTYNMVILPVSFPINYVIHLAEFPPELLLQSLQLCLNTWCFALKFFTL
IVYTHRLELANKHFDELDKYCVKPAEKRKVRDMVATITRLYLTFVVVYVL
YATSTLLDGLLHHRVPYNTYYPFINWRVDRTQMYIQSFLEYFTVGYAIYV
ATATDSYPVIYVAALRTHILLLKDRIIYLGDPSNEGSSDPSYMFKSLVDC
IKAHRTMLNFCDAIQPIISGTIFAQFIICGSILGIIMINMVLFADQSTRF
GIVIYVMAVLLQTFPLCFYCNAIVDDCKELAHALFHSAWWVQDKRYQRTV
IQFLQKLQQPMTFTAMNIFNINLATNINVAKFAFTVYAIASGMNLDQKLS
IKE*

MIP14440.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11232-PA 403 GF11232-PA 1..403 1..403 1640 74.9 Plus
Dana\GF11032-PA 407 GF11032-PA 8..404 5..403 739 37.2 Plus
Dana\GF13833-PA 399 GF13833-PA 3..395 5..398 716 36.3 Plus
Dana\GF11847-PA 398 GF11847-PA 4..396 5..397 677 35.4 Plus
Dana\GF11845-PA 410 GF11845-PA 4..398 5..398 621 32.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10701-PA 403 GG10701-PA 1..403 1..403 1810 84.4 Plus
Dere\GG10847-PA 406 GG10847-PA 7..403 5..403 752 36 Plus
Dere\GG10846-PA 399 GG10846-PA 3..395 5..398 700 36.8 Plus
Dere\GG20029-PA 398 GG20029-PA 4..396 5..398 686 34.3 Plus
Dere\GG24797-PA 397 GG24797-PA 6..395 5..398 578 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21457-PA 405 GH21457-PA 7..400 5..400 761 36.3 Plus
Dgri\GH20416-PA 399 GH20416-PA 3..395 5..398 719 37.3 Plus
Dgri\GH20413-PA 399 GH20413-PA 3..395 5..398 686 36.1 Plus
Dgri\GH20412-PA 399 GH20412-PA 3..395 5..398 674 35.6 Plus
Dgri\GH20418-PA 399 GH20418-PA 3..396 5..399 673 37 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Or43b-PA 403 CG17853-PA 1..403 1..403 2113 100 Plus
Or42a-PA 406 CG17250-PA 7..403 5..403 753 36.8 Plus
Or42b-PA 399 CG12754-PA 3..395 5..398 699 36.5 Plus
Or59b-PA 398 CG3569-PA 4..396 5..398 679 34.5 Plus
Or22b-PA 397 CG4231-PA 6..395 5..398 632 34.3 Plus
Or22a-PA 397 CG12193-PA 6..395 5..398 587 33.5 Plus
Or59c-PA 411 CG17226-PA 6..399 5..398 554 30.8 Plus
Or98a-PA 397 CG5540-PA 51..395 53..400 523 31.9 Plus
Or7a-PA 413 CG10759-PA 47..410 45..400 511 31.8 Plus
Or85a-PA 397 CG7454-PA 3..394 5..399 496 29.4 Plus
Or33a-PA 378 CG16960-PA 8..373 20..390 233 22.5 Plus
Or33b-PA 379 CG16961-PA 126..378 140..393 228 22.9 Plus
Or33c-PA 384 CG5006-PA 41..377 58..389 215 21.5 Plus
Or23a-PA 379 CG9880-PA 66..370 83..389 210 21.2 Plus
Or2a-PA 397 CG3206-PA 32..392 42..389 210 20.8 Plus
Or59a-PA 379 CG9820-PA 105..373 117..389 196 22.4 Plus
Or43a-PA 376 CG1854-PA 162..373 202..393 163 21.6 Plus
Or85d-PA 412 CG11742-PA 270..409 254..393 154 20 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19935-PA 408 GI19935-PA 7..402 5..400 743 38.1 Plus
Dmoj\GI19601-PA 399 GI19601-PA 3..395 5..398 721 37.9 Plus
Dmoj\GI19947-PA 413 GI19947-PA 7..400 5..400 697 34 Plus
Dmoj\GI19019-PA 399 GI19019-PA 1..397 1..398 648 32.8 Plus
Dmoj\GI17082-PA 400 GI17082-PA 14..397 13..398 600 32.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10387-PA 407 GL10387-PA 3..401 5..403 1654 77.9 Plus
Dper\GL20053-PA 407 GL20053-PA 4..403 6..403 765 38.4 Plus
Dper\GL20054-PA 399 GL20054-PA 3..395 5..398 738 37.6 Plus
Dper\GL20052-PA 409 GL20052-PA 7..403 5..403 719 36 Plus
Dper\GL17559-PA 398 GL17559-PA 4..396 5..398 679 34.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Or43b-PA 407 GA14700-PA 3..401 5..403 1654 77.9 Plus
Dpse\Or42a2-PA 407 GA14414-PA 4..403 6..403 770 38.2 Plus
Dpse\Or42b-PA 399 GA11791-PA 3..395 5..398 743 37.8 Plus
Dpse\Or42a1-PA 409 GA24267-PA 7..403 5..403 706 35.5 Plus
Dpse\Or59b-PA 398 GA17527-PA 4..396 5..398 675 34.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20747-PA 403 GM20747-PA 1..403 1..403 2087 96 Plus
Dsec\GM16497-PA 406 GM16497-PA 7..403 5..403 756 37.2 Plus
Dsec\GM16496-PA 399 GM16496-PA 3..395 5..398 706 36.3 Plus
Dsec\GM15541-PA 398 GM15541-PA 4..396 5..398 682 34.7 Plus
Dsec\GM15540-PA 411 GM15540-PA 6..399 5..398 579 32.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10213-PA 403 GD10213-PA 1..403 1..403 2107 97 Plus
Dsim\GD10348-PA 406 GD10348-PA 7..403 5..403 761 37.2 Plus
Dsim\GD10347-PA 422 GD10347-PA 26..418 5..398 710 36.5 Plus
Dsim\GD25045-PA 398 GD25045-PA 4..396 5..398 682 34.7 Plus
Dsim\GD25044-PA 411 GD25044-PA 6..399 5..398 581 33.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17804-PA 412 GJ17804-PA 7..400 5..400 739 36.8 Plus
Dvir\GJ18409-PA 400 GJ18409-PA 3..396 5..398 703 37.4 Plus
Dvir\GJ15103-PA 409 GJ15103-PA 7..401 5..400 697 36.6 Plus
Dvir\GJ15102-PA 387 GJ15102-PA 5..381 3..400 687 37.2 Plus
Dvir\GJ10716-PA 399 GJ10716-PA 15..398 14..398 664 34.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21351-PA 398 GK21351-PA 3..396 5..399 1354 60.8 Plus
Dwil\GK21762-PA 410 GK21762-PA 7..403 5..403 765 37 Plus
Dwil\GK21759-PA 399 GK21759-PA 3..399 5..402 695 36.4 Plus
Dwil\GK23054-PA 398 GK23054-PA 4..398 5..400 676 33.8 Plus
Dwil\GK23053-PA 404 GK23053-PA 6..399 5..398 649 33.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23541-PA 347 GE23541-PA 1..347 57..403 1606 87.3 Plus
Dyak\GE11311-PA 406 GE11311-PA 6..403 4..403 763 37.1 Plus
Dyak\GE19440-PA 399 GE19440-PA 3..395 5..398 715 36.8 Plus
Dyak\GE11565-PA 398 GE11565-PA 4..396 5..398 685 34.3 Plus
Dyak\GE17626-PA 397 GE17626-PA 6..395 5..398 604 34 Plus