Clone MIP15186 Report

Search the DGRC for MIP15186

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:151
Well:86
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptinaD-RB
Protein status:MIP15186.pep: gold
Sequenced Size:2278

Clone Sequence Records

MIP15186.complete Sequence

2278 bp assembled on 2009-12-14

GenBank Submission: BT120028.1

> MIP15186.complete
TGAAAACCCATAACAATAAATATTCGATATTACATTTGAGCTTAATTCGG
TGCGCTTAATGTCCGGTCAGTGAGTCGCGAGTTTTTGGCTAGGATTACGG
AGCAGTCATCTCAAGCAGCGAGGATGGTTCAGTTCCTGGGCAAACAGGGC
ACCGCGGGTGTTTTTATTTCATTTGGAATGCACAATCCTTTCCCAGAGCT
CATTCACATGGTGACCCTGGACAAGACGGGCAAGAAGTCCTTCGGCATCT
GCATAGTGCGCGGCGAGGTGAAGGATTCGCCCAACACCAAGACCACCGGC
ATCTTCATCAAGGGCATTGTGCCCGACAGTCCCGCGCATCTGTGTGGTCG
CCTAAAGGTTGGCGATCGGATCCTCTCGCTCAACGGAAAGGATGTGCGCA
ACTCCACCGAACAGGCGGTCATCGATCTCATCAAGGAGGCGGACTTCAAG
ATCGAACTGGAGATTCAGACCTTCGACAAGAGCGATGAGCAGCAGGCCAA
GTCAGATCCGCGGAGCAATGGCTACATGCAGGCCAAGAACAAGTTCAACC
AGGAGCAGACCACCAACAACAATGCGTCCGGAGGTCAGGGAATGGGGCAA
GGTCAGGGTCAGGGTCAGGGAATGGCTGGCATGAACCGGCAGCAATCGAT
GCAGAAGCGGAATACCACATTCACGGCCTCGATGCGTCAGAAGCATAGTA
ACTACGCCGACGAGGATGACGAGGACACCCGGGACATGACCGGTCGCATT
CGCACGGAGGCGGGTTATGAGATCGATCGAGCATCCGCCGGTAATTGCAA
ACTCAACAAGCAGGAAAAGGATCGCGACAAGGAGCAGGAAGATGAATTTG
GCTACACGATGGCTAAGATCAACAAGCGGTACAACATGATGAAGGATCTG
CGCAGGATCGAGGTCCAGAGGGACGCCAGCAAGCCACTGGGACTCGCACT
CGCTGGCCACAAGGACCGCCAGAAGATGGCCTGCTTTGTTGCCGGTGTGG
ATCCCAACGGAGCATTGGGTAGCGTGGACATCAAACCGGGCGACGAGATC
GTCGAGGTCAACGGCAATGTGCTGAAGAATCGCTGCCACTTGAACGCTTC
CGCCGTGTTCAAGAACGTGGATGGGGATAAGCTCGTGATGATCACCTCGC
GACGCAAGCCCAACGATGAGGGCATGTGCGTCAAGCCCATCAAGAAGTTC
CCCACCGCGTCTGATGAGACTAAGTTTATCTTCGACCAGTTTCCCAAGGC
GCGCACGGTGCAGGTGCGCAAGGAGGGTTTCCTGGGCATCATGGTCATCT
ATGGCAAGCACGCTGAGGTGGGAAGTGGCATTTTCATCTCGGATCTGAGA
GAGGGATCGAATGCCGAGTTGGCGGGCGTGAAAGTGGGCGACATGCTGCT
GGCCGTTAATCAGGATGTAACACTGGAATCCAACTACGATGATGCTACTG
GACTGCTTAAACGTGCCGAGGGCGTAGTGACCATGATTCTATTGACTCTC
AAGAGCGAGGAGGCGATAAAGGCTGAGAAGGCGGCGGAAGAGAAAAAGAA
GGAGGAGGCCAAGAAAGAGGAGGAAAAGCCACAGGAACCCGCCACAGCCG
AGATCAAGCCGAACAAAAAGATACTCATTGAGTTGAAGGTGGAAAAGAAG
CCAATGGGCGTCATCGTCTGCGGCGGCAAGAACAACCATGTCACGACTGG
CTGTGTAATCACCCACGTTTATCCGGAGGGACAAGTGGCAGCCGACAAGC
GCCTCAAGATCTTTGACCACATTTGCGATATAAATGGTACGCCAATCCAC
GTGGGATCCATGACGACACTGAAGGTCCATCAGTTATTCCACACCACATA
CGAGAAAGCGGTCACCCTAACGGTCTTCCGCGCTGATCCTCCGGAGCTGG
AAAAGTTTAACGTTGACCTTATGAAAAAAGCAGGCAAGGAGCTGGGCCTG
TCGCTTTCTCCCAACGAAATTGGATGTACCATCGCGGACTTGATTCAAGG
ACAATACCCGGAGATAGACAGCAAACTGCAGCGCGGCGATATTATCACCA
AATTCAATGGCGATGCCTTGGAGGGTCTTCCGTTCCAGGTGTGCTACGCC
TTGTTCAAGGGAGCCAACGGCAAGGTATCGATGGAAGTGACACGACCCAA
GCCCACTCTACGTACGGAGGCACCCAAGGCCTAGAGACGATCCTCATTCT
CCTCCTCCGGTAGCGAAGCAGTGCAGCAATTCAATAAAAGAACCAACAAT
TGGAATTCAAAAAAAAAAAAAAAAAAAA

MIP15186.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-RA 2295 inaD-RA 233..2295 196..2258 10300 99.9 Plus
inaD-RA 2295 inaD-RA 73..233 1..160 765 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18744159..18744770 771..160 2985 99.2 Minus
chr2R 21145070 chr2R 18743596..18743952 1218..862 1785 100 Minus
chr2R 21145070 chr2R 18742582..18742879 1992..1695 1445 99 Minus
chr2R 21145070 chr2R 18742246..18742512 2258..1992 1305 99.3 Minus
chr2R 21145070 chr2R 18743306..18743533 1444..1217 1125 99.6 Minus
chr2R 21145070 chr2R 18745117..18745277 160..1 755 99.4 Minus
chr2R 21145070 chr2R 18742939..18743079 1695..1555 705 100 Minus
chr2R 21145070 chr2R 18743136..18743247 1555..1444 560 100 Minus
chr2R 21145070 chr2R 18744008..18744106 868..770 480 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:18:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22857601..22858212 771..160 3060 100 Minus
2R 25286936 2R 22857038..22857394 1218..862 1785 100 Minus
2R 25286936 2R 22856024..22856321 1992..1695 1490 100 Minus
2R 25286936 2R 22855684..22855954 2262..1992 1340 99.6 Minus
2R 25286936 2R 22856748..22856975 1444..1217 1140 100 Minus
2R 25286936 2R 22858562..22858722 160..1 755 99.4 Minus
2R 25286936 2R 22856381..22856521 1695..1555 705 100 Minus
2R 25286936 2R 22856578..22856689 1555..1444 560 100 Minus
2R 25286936 2R 22857450..22857548 868..770 480 99 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22858800..22859411 771..160 3060 100 Minus
2R 25260384 2R 22858237..22858593 1218..862 1785 100 Minus
2R 25260384 2R 22857223..22857520 1992..1695 1490 100 Minus
2R 25260384 2R 22856883..22857153 2262..1992 1340 99.6 Minus
2R 25260384 2R 22857947..22858174 1444..1217 1140 100 Minus
2R 25260384 2R 22859761..22859921 160..1 765 99.3 Minus
2R 25260384 2R 22857580..22857720 1695..1555 705 100 Minus
2R 25260384 2R 22857777..22857888 1555..1444 560 100 Minus
2R 25260384 2R 22858649..22858747 868..770 480 98.9 Minus
Blast to na_te.dros performed on 2019-03-15 21:01:20 has no hits.

MIP15186.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:01:58 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18742246..18742511 1993..2258 99 <- Minus
chr2R 18742582..18742878 1696..1992 98 <- Minus
chr2R 18742939..18743078 1556..1695 100 <- Minus
chr2R 18743136..18743247 1444..1555 100 <- Minus
chr2R 18743307..18743531 1219..1443 99 <- Minus
chr2R 18743596..18743951 863..1218 100 <- Minus
chr2R 18744014..18744104 772..862 100 <- Minus
chr2R 18744159..18744769 161..771 99 <- Minus
chr2R 18745117..18745277 1..160 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-12-14 11:37:27 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 37..2025 196..2184 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:28:06 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RB 1..2061 124..2184 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:34:29 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RB 1..2061 124..2184 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:40:36 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RB 1..2061 124..2184 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-14 11:37:27 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RA 73..232 1..159 99 == Plus
inaD-RA 233..2295 196..2258 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:28:06 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RB 73..2331 1..2258 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:34:29 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RB 73..2331 1..2258 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:36 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
inaD-RB 73..2331 1..2258 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:01:58 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22858562..22858722 1..160 99   Minus
2R 22855688..22855953 1993..2258 99 <- Minus
2R 22856024..22856320 1696..1992 100 <- Minus
2R 22856381..22856520 1556..1695 100 <- Minus
2R 22856578..22856689 1444..1555 100 <- Minus
2R 22856749..22856973 1219..1443 100 <- Minus
2R 22857038..22857393 863..1218 100 <- Minus
2R 22857456..22857546 772..862 100 <- Minus
2R 22857601..22858211 161..771 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:01:58 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22858562..22858722 1..160 99   Minus
2R 22855688..22855953 1993..2258 99 <- Minus
2R 22856024..22856320 1696..1992 100 <- Minus
2R 22856381..22856520 1556..1695 100 <- Minus
2R 22856578..22856689 1444..1555 100 <- Minus
2R 22856749..22856973 1219..1443 100 <- Minus
2R 22857038..22857393 863..1218 100 <- Minus
2R 22857456..22857546 772..862 100 <- Minus
2R 22857601..22858211 161..771 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:01:58 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22858562..22858722 1..160 99   Minus
2R 22855688..22855953 1993..2258 99 <- Minus
2R 22856024..22856320 1696..1992 100 <- Minus
2R 22856381..22856520 1556..1695 100 <- Minus
2R 22856578..22856689 1444..1555 100 <- Minus
2R 22856749..22856973 1219..1443 100 <- Minus
2R 22857038..22857393 863..1218 100 <- Minus
2R 22857456..22857546 772..862 100 <- Minus
2R 22857601..22858211 161..771 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:34:29 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18746085..18746245 1..160 99   Minus
arm_2R 18743211..18743476 1993..2258 99 <- Minus
arm_2R 18743547..18743843 1696..1992 100 <- Minus
arm_2R 18743904..18744043 1556..1695 100 <- Minus
arm_2R 18744101..18744212 1444..1555 100 <- Minus
arm_2R 18744272..18744496 1219..1443 100 <- Minus
arm_2R 18744561..18744916 863..1218 100 <- Minus
arm_2R 18744979..18745069 772..862 100 <- Minus
arm_2R 18745124..18745734 161..771 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:14:07 Download gff for MIP15186.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22856905..22857170 1993..2258 99 <- Minus
2R 22857241..22857537 1696..1992 100 <- Minus
2R 22857598..22857737 1556..1695 100 <- Minus
2R 22857795..22857906 1444..1555 100 <- Minus
2R 22857966..22858190 1219..1443 100 <- Minus
2R 22858255..22858610 863..1218 100 <- Minus
2R 22858673..22858763 772..862 100 <- Minus
2R 22858818..22859428 161..771 100 <- Minus
2R 22859779..22859939 1..160 99   Minus

MIP15186.pep Sequence

Translation from 123 to 2183

> MIP15186.pep
MVQFLGKQGTAGVFISFGMHNPFPELIHMVTLDKTGKKSFGICIVRGEVK
DSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVI
DLIKEADFKIELEIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNN
ASGGQGMGQGQGQGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDE
DTRDMTGRIRTEAGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKIN
KRYNMMKDLRRIEVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGS
VDIKPGDEIVEVNGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEG
MCVKPIKKFPTASDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVG
SGIFISDLREGSNAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEG
VVTMILLTLKSEEAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKI
LIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHI
CDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLM
KKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALE
GLPFQVCYALFKGANGKVSMEVTRPKPTLRTEAPKA*

MIP15186.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11324-PA 672 GF11324-PA 1..672 1..686 3091 87.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20089-PA 678 GG20089-PA 1..678 1..686 3506 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20094-PA 648 GH20094-PA 1..648 29..685 2849 82.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-PB 686 CG3504-PB 1..686 1..686 3545 100 Plus
inaD-PA 674 CG3504-PA 1..674 1..686 3453 98.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18992-PA 665 GI18992-PA 15..665 25..685 2877 83.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10199-PA 661 GL10199-PA 1..661 1..685 2829 82.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17487-PA 675 GA17487-PA 1..675 1..685 2991 85 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15606-PA 675 GM15606-PA 1..675 1..686 3523 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25102-PA 673 GD25102-PA 1..673 1..686 3489 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19956-PA 523 GJ19956-PA 2..523 169..686 2235 84.7 Plus
Dvir\GJ19955-PA 142 GJ19955-PA 17..138 27..150 561 87.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20857-PA 675 GK20857-PA 1..674 1..685 2860 82.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11628-PA 674 GE11628-PA 1..674 1..686 3503 96.2 Plus

MIP15186.hyp Sequence

Translation from 123 to 2183

> MIP15186.hyp
MVQFLGKQGTAGVFISFGMHNPFPELIHMVTLDKTGKKSFGICIVRGEVK
DSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVI
DLIKEADFKIELEIQTFDKSDEQQAKSDPRSNGYMQAKNKFNQEQTTNNN
ASGGQGMGQGQGQGQGMAGMNRQQSMQKRNTTFTASMRQKHSNYADEDDE
DTRDMTGRIRTEAGYEIDRASAGNCKLNKQEKDRDKEQEDEFGYTMAKIN
KRYNMMKDLRRIEVQRDASKPLGLALAGHKDRQKMACFVAGVDPNGALGS
VDIKPGDEIVEVNGNVLKNRCHLNASAVFKNVDGDKLVMITSRRKPNDEG
MCVKPIKKFPTASDETKFIFDQFPKARTVQVRKEGFLGIMVIYGKHAEVG
SGIFISDLREGSNAELAGVKVGDMLLAVNQDVTLESNYDDATGLLKRAEG
VVTMILLTLKSEEAIKAEKAAEEKKKEEAKKEEEKPQEPATAEIKPNKKI
LIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHI
CDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLM
KKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALE
GLPFQVCYALFKGANGKVSMEVTRPKPTLRTEAPKA*

MIP15186.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
inaD-PB 686 CG3504-PB 1..686 1..686 3545 100 Plus
inaD-PA 674 CG3504-PA 1..674 1..686 3453 98.3 Plus