Clone MIP16350 Report

Search the DGRC for MIP16350

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:163
Well:50
Vector:pOT2|pOTB7_DraIII
Associated Gene/Transcriptsnama-RB
Protein status:MIP16350.pep: gold
Sequenced Size:2202

Clone Sequence Records

MIP16350.complete Sequence

2202 bp assembled on 2010-05-07

GenBank Submission: BT124892.1

> MIP16350.complete
TCGGAGTTTTTATGTGCTTGCAGAGTAGTGTAAGTAATTGCTATTTTTGT
GCCAGCTGCTTGCCGGTAGTAAACAACGCGCGTGAACTGTGATGCCTTGC
AATCCTCAGCGCAATTCAAGGCGGTTTAAGTCCGAACGACCCAAGAAACC
CGAAGTGTACGTACATATGTATGTTTTCGCGTGTGTATTTTTATGCACAT
GCAATTCTATGCTGCTGCCATGCAAAGGTGCAAAAAATGCGAAATGCAAA
TATCGTTCACAGAATGCCCATTGATCTGACCGGATTTTAGGTGGCACATA
CGCATATGCATATAGCATGTTCCCGGAATTGTGCAACTTCGCATACATAC
ATATGTAATGTCTTATGTTGGCATAATTATCCGCTGTTCAAGGGAAGTGC
ATGGTGCAAATCGGGAATCTATATTCGGCATACTTTGATTTCTTTCATAT
GCAACTATGTCGGTACACTATAAATTTAAGAGTACACTCAACTTTGATAC
AATTACTTTTGATGGACTTCACATTTCTGTCGGGGACTTAAAAAGGGAGA
TTGTGCAGCAGAAGCGACTGGGCAAAATCATCGACTTTGATCTCCAAATA
ACAAATGCGCAGAGTAAAGAAGAATACAAGGACGATGGGTTCCTTATTCC
CAAAAACACAACGCTGATCATATCGCGCATCCCCATCGCCCATCCCACAA
AAAAGGGCTGGGAGCCACCAGCAGCAGAAAATGCCTTTTCGGCGGCGCCT
GCCAAGCAGGACAACTTCAACATGGACCTGTCCAAAATGCAAGGCACGGA
GGAGGACAAAATCCAGGCCATGATGATGCAGAGCACAGTCGACTATGATC
CTAAGACGTACCATCGTATTAAAGGACAATCGCAAGTGGGAGAAGTTCCC
GCATCCTACCGATGCAACAAATGCAAGAAAAGCGGACACTGGATCAAAAA
CTGTCCCTTTGTGGGGGGAAAGGACCAGCAAGAGGTCAAACGGAATACTG
GTATTCCGCGGTCTTTCCGCGACAAGCCAGATGCGGCTGAGAACGAATCA
GCCGATTTTGTGCTGCCTGCTGTACAAAACCAAGAGATACCGGAGGATCT
GATATGCGGCATATGCCGAGATATATTCGTCGATGCTGTCATGATACCCT
GCTGCGGAAGTTCCTTTTGTGACGACTGTGTGCGAACCTCCTTATTGGAG
TCAGAGGATAGTGAGTGCCCCGATTGCAAGGAGAAGAACTGTTCGCCTGG
CTCCCTGATACCTAATCGGTTCTTGAGGAATTCGGTGAACGCCTTTAAAA
ATGAGACTGGGTATAACAAAAGCGCGGCTAAGCCAGCTGCAGTAAAAAAT
GAGGAAAAACCTCCTGTTGAAAAAGAAGTGGAGAAAAAGCCAGTCGCGGA
GGTGGAACCCGAAGAGACTGAGGTGAAACCTGAAAAGCAAAAAGAATCCG
AAACCAATGGCAGTAATCCGCCAAAATCGGAATCTCCAGAGCCTCCCGCA
ACCACAGAACCATCACAGAAGGAGAAAGATAAATATGATTCAGACTACGA
GGATAACATTACCATAAAAATGCCCCAGCCTGCAGCTGATTCTACAACAG
TGCCCAGCAAAAGATCCCCCAGTTATTCCCACAGAAGTGAATCCTCTCAT
CGACGGGACAGGTCGGATTATGTTTCCGATCACGATCACAAGCACCAACG
TCCATCAAAATCGGAGTCTGTTAACAAGGATCGCAGTCTCCTGCCCTTGC
CCATTGGCACCCTGCCTAGCTACCAGGGCCACATGATGGCCGAATCAGAA
GAAGCTCGTCGATCGAGTGCCTATAAGCCCCCTTATATGCAAATGCAGCG
GGGCCCACCTCCTATGCACATGATGAGTCACCACATGCCAGCCTACAACA
ACGGGTTTAACAACATGGGACAGAGGCCTCCCCTCAGGTAGGTTTCTTTT
CCACCCGTCCGGATCCCGCTACCATGTGGATCGAGTCAAGTGTCGAGGCC
ACTGGAACTCCGAGGTGTTGACGAGTCCATACGCAGCCGGTCCTGCCTGA
TCTCAATATTTTTAAGTTCCAACAGAGACTATACACACACACTAGTTAAG
AGTAATTTAAGCTCTGGGCTCTGCGCCTTTATGCTTTGTTGAATATTGGT
TATTCCTAATTAAAACAGTATTGCTTACAATCAAAAAAAAAAAAAAAAAA
AA

MIP16350.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
snama.a 3911 snama.a 70..1569 438..1937 7500 100 Plus
snama-RA 3980 snama-RA 98..1597 438..1937 7500 100 Plus
snama.a 3911 snama.a 1..69 89..156 305 98.5 Plus
snama-RA 3980 snama-RA 69..97 1..29 145 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19974916..19975486 1612..2182 2855 100 Plus
chr2R 21145070 chr2R 19974039..19974517 858..1336 2380 99.8 Plus
chr2R 21145070 chr2R 19972649..19973086 1..437 2065 98.6 Plus
chr2R 21145070 chr2R 19974576..19974852 1335..1611 1385 100 Plus
chr2R 21145070 chr2R 19973748..19973987 621..860 1185 99.6 Plus
chr2R 21145070 chr2R 19973505..19973690 437..622 900 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24088942..24089514 1612..2184 2865 100 Plus
2R 25286936 2R 24088065..24088543 858..1336 2395 100 Plus
2R 25286936 2R 24086674..24087111 1..437 2140 99.8 Plus
2R 25286936 2R 24088602..24088878 1335..1611 1385 100 Plus
2R 25286936 2R 24087774..24088013 621..860 1200 100 Plus
2R 25286936 2R 24087531..24087716 437..622 930 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24090141..24090713 1612..2184 2865 100 Plus
2R 25260384 2R 24089264..24089742 858..1336 2395 100 Plus
2R 25260384 2R 24087873..24088310 1..437 2150 99.7 Plus
2R 25260384 2R 24089801..24090077 1335..1611 1385 100 Plus
2R 25260384 2R 24088973..24089212 621..860 1200 100 Plus
2R 25260384 2R 24088730..24088915 437..622 930 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:20:15 has no hits.

MIP16350.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:21:11 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19972649..19973086 1..437 98 -> Plus
chr2R 19973506..19973690 438..622 98 -> Plus
chr2R 19973750..19973984 623..857 99 -> Plus
chr2R 19974039..19974517 858..1336 99 -> Plus
chr2R 19974578..19974852 1337..1611 100 -> Plus
chr2R 19974916..19975486 1612..2182 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-05-07 14:36:11 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
snama-RA 1..1487 457..1943 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:50 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
snama-RA 1..1487 457..1943 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:32 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
snama-RB 1..1485 457..1941 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:35:23 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
snama-RB 1..1485 457..1941 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-07 14:36:11 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
snama-RA 94..1603 431..1943 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:50 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
snama-RA 94..1603 431..1943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:32 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
snama-RB 228..1972 438..2182 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:35:23 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
snama-RB 228..1972 438..2182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:11 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24087776..24088010 623..857 100 -> Plus
2R 24086674..24087111 1..437 99 -> Plus
2R 24087532..24087716 438..622 100 -> Plus
2R 24088065..24088543 858..1336 100 -> Plus
2R 24088604..24088878 1337..1611 100 -> Plus
2R 24088942..24089512 1612..2182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:11 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24087776..24088010 623..857 100 -> Plus
2R 24086674..24087111 1..437 99 -> Plus
2R 24087532..24087716 438..622 100 -> Plus
2R 24088065..24088543 858..1336 100 -> Plus
2R 24088604..24088878 1337..1611 100 -> Plus
2R 24088942..24089512 1612..2182 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:21:11 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24087776..24088010 623..857 100 -> Plus
2R 24086674..24087111 1..437 99 -> Plus
2R 24087532..24087716 438..622 100 -> Plus
2R 24088065..24088543 858..1336 100 -> Plus
2R 24088604..24088878 1337..1611 100 -> Plus
2R 24088942..24089512 1612..2182 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:32 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19976127..19976401 1337..1611 100 -> Plus
arm_2R 19974197..19974634 1..437 99 -> Plus
arm_2R 19975055..19975239 438..622 100 -> Plus
arm_2R 19975299..19975533 623..857 100 -> Plus
arm_2R 19975588..19976066 858..1336 100 -> Plus
arm_2R 19976465..19977035 1612..2182 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:09:20 Download gff for MIP16350.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24089821..24090095 1337..1611 100 -> Plus
2R 24087891..24088328 1..437 99 -> Plus
2R 24088749..24088933 438..622 100 -> Plus
2R 24088993..24089227 623..857 100 -> Plus
2R 24089282..24089760 858..1336 100 -> Plus
2R 24090159..24090729 1612..2182 100   Plus

MIP16350.pep Sequence

Translation from 456 to 1940

> MIP16350.pep
MSVHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDFDLQITN
AQSKEEYKDDGFLIPKNTTLIISRIPIAHPTKKGWEPPAAENAFSAAPAK
QDNFNMDLSKMQGTEEDKIQAMMMQSTVDYDPKTYHRIKGQSQVGEVPAS
YRCNKCKKSGHWIKNCPFVGGKDQQEVKRNTGIPRSFRDKPDAAENESAD
FVLPAVQNQEIPEDLICGICRDIFVDAVMIPCCGSSFCDDCVRTSLLESE
DSECPDCKEKNCSPGSLIPNRFLRNSVNAFKNETGYNKSAAKPAAVKNEE
KPPVEKEVEKKPVAEVEPEETEVKPEKQKESETNGSNPPKSESPEPPATT
EPSQKEKDKYDSDYEDNITIKMPQPAADSTTVPSKRSPSYSHRSESSHRR
DRSDYVSDHDHKHQRPSKSESVNKDRSLLPLPIGTLPSYQGHMMAESEEA
RRSSAYKPPYMQMQRGPPPMHMMSHHMPAYNNGFNNMGQRPPLR*

MIP16350.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11371-PA 1327 GF11371-PA 1..506 1..493 1907 77.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22940-PA 1231 GG22940-PA 1..493 1..493 2480 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21725-PA 1254 GH21725-PA 1..512 1..493 1554 63.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
snama-PB 494 CG3231-PB 1..494 1..494 2645 100 Plus
snama-PA 1231 CG3231-PA 1..493 1..493 2640 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20676-PA 1291 GI20676-PA 1..503 1..493 1535 61 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11666-PA 1314 GL11666-PA 1..545 1..493 1813 69.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16823-PA 1297 GA16823-PA 1..528 1..493 1869 72 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18306-PA 1232 GM18306-PA 1..493 1..493 2639 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20426-PA 1248 GJ20426-PA 1..504 1..493 1513 59.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21919-PA 1320 GK21919-PA 1..501 1..493 1733 69.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14378-PA 1232 GE14378-PA 1..493 1..493 2450 95.5 Plus

MIP16350.hyp Sequence

Translation from 457 to 1941

> MIP16350.hyp
MSVHYKFKSTLNFDTITFDGLHISVGDLKREIVQQKRLGKIIDFDLQITN
AQSKEEYKDDGFLIPKNTTLIISRIPIAHPTKKGWEPPAAENAFSAAPAK
QDNFNMDLSKMQGTEEDKIQAMMMQSTVDYDPKTYHRIKGQSQVGEVPAS
YRCNKCKKSGHWIKNCPFVGGKDQQEVKRNTGIPRSFRDKPDAAENESAD
FVLPAVQNQEIPEDLICGICRDIFVDAVMIPCCGSSFCDDCVRTSLLESE
DSECPDCKEKNCSPGSLIPNRFLRNSVNAFKNETGYNKSAAKPAAVKNEE
KPPVEKEVEKKPVAEVEPEETEVKPEKQKESETNGSNPPKSESPEPPATT
EPSQKEKDKYDSDYEDNITIKMPQPAADSTTVPSKRSPSYSHRSESSHRR
DRSDYVSDHDHKHQRPSKSESVNKDRSLLPLPIGTLPSYQGHMMAESEEA
RRSSAYKPPYMQMQRGPPPMHMMSHHMPAYNNGFNNMGQRPPLR*

MIP16350.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
snama-PB 494 CG3231-PB 1..494 1..494 2645 100 Plus
snama-PA 1231 CG3231-PA 1..493 1..493 2640 100 Plus