Clone MIP16369 Report

Search the DGRC for MIP16369

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:163
Well:69
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG8112-RC
Protein status:MIP16369.pep: gold
Sequenced Size:1068

Clone Sequence Records

MIP16369.complete Sequence

1068 bp assembled on 2010-01-26

GenBank Submission: BT120210.1

> MIP16369.complete
ACGTCCCCGGGGGCAGTCGCTGCTGTAAAATCCACCAGTTGGATAGGATT
GACATTAACACCAAAGGAACAGTTTCACTAGCAGAAGCGCACATAATTTG
AGAACCAGACATGGCCGCTGAAAGGCAGGAGAAACGAGGCGAGGAGGAGA
CGCAGCCCAGGTTGCCCGACCTCGGCTTTGTGCGCGACAAGCTTCAGAAG
TTCCAGTCCAAGATGCTGACCGACTTCGAGCAGCGGCTGTCCTGCATGGT
AGAGGATGTGCTGCAGGATCTGCGACAGCGCGAGTTGCGTGCCCACGAGT
TCCCCAACTTCGAGAGATCCGATCGGAAGAGCACCTGGCACAATCGCGTG
ACCAGTCAAGCGCCAGCAGACGTCAGCGACTCCACAAATGGCCATGCAAA
TGGCACGCATCCAAGGCCACCGATCCAAAGCGAAACATCCGCTCGTAAGC
AGCGACGACAACTGCCCGAAAAAGTGTTCGTTGCCCGGGAATCGTACCTC
ACCGCTCTGCTGCAGGTGGAGCACATGCGCACCATCTACCACATCTTTTA
TATTATTCTGGTCATGTTCCTGCTGAACGTGATCTGCTACGATTACTTTG
TTGATGGCCGCTTCGATCTGGGACTTGGCACCTTCCGCGGCGGACTGCGC
CGCCTCCACTGGGTGATGGGCGTTTGGCTGCTGGAGCATGTCTTCGTCCT
GGCGCTCTATTTCGCCTTCCGCGGATGGGCCTTGGTCAGGCACAAACTGA
AACCGCACAGATTGTAATGATAATTTATGGAATCATATCTGCTTTATTAA
AAATGCAGGTAGAGTTAAAAGCTCATAACATAGCCTTTTGTTGAGGCACT
TGACCAGCAAATTGTGACGACATCGCCTTTAACAAAGGAAATTCACTTAC
CAGTTACTCATCTCGGTTGAATTGTCAACGTTTACTTGCGCGTTTGCTCT
GATTGTTAAAAAAAAGCATTTCCCATAAAAGTAAAGTAACTTAAGAGAAG
ATAAGTGCAGGAATATAGAAATGCTATTAATAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

MIP16369.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8112-RA 2097 CG8112-RA 216..975 1..760 3800 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4538981..4539740 1..760 3785 99.9 Plus
chr3R 27901430 chr3R 4539803..4540074 762..1031 1260 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:19:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8713012..8713771 1..760 3800 100 Plus
3R 32079331 3R 8713832..8714108 760..1035 1335 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8453843..8454602 1..760 3800 100 Plus
3R 31820162 3R 8454663..8454939 760..1035 1345 99.6 Plus
Blast to na_te.dros performed on 2019-03-16 06:54:04 has no hits.

MIP16369.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:54:58 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4538981..4539739 1..759 99 -> Plus
chr3R 4539801..4540074 760..1031 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-26 12:29:17 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 1..652 111..763 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:45:13 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 1..652 111..763 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:35 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RC 1..657 111..767 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:25:13 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RC 1..657 111..767 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-26 12:29:15 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 216..977 1..763 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:45:12 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RA 216..977 1..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:35 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RC 80..1111 1..1031 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:25:13 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
CG8112-RC 80..1111 1..1031 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:58 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8713012..8713770 1..759 100 -> Plus
3R 8713832..8714104 760..1031 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:58 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8713012..8713770 1..759 100 -> Plus
3R 8713832..8714104 760..1031 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:54:58 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8713012..8713770 1..759 100 -> Plus
3R 8713832..8714104 760..1031 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:35 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4538734..4539492 1..759 100 -> Plus
arm_3R 4539554..4539826 760..1031 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:30:54 Download gff for MIP16369.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8453843..8454601 1..759 100 -> Plus
3R 8454663..8454935 760..1031 99   Plus

MIP16369.pep Sequence

Translation from 110 to 766

> MIP16369.pep
MAAERQEKRGEEETQPRLPDLGFVRDKLQKFQSKMLTDFEQRLSCMVEDV
LQDLRQRELRAHEFPNFERSDRKSTWHNRVTSQAPADVSDSTNGHANGTH
PRPPIQSETSARKQRRQLPEKVFVARESYLTALLQVEHMRTIYHIFYIIL
VMFLLNVICYDYFVDGRFDLGLGTFRGGLRRLHWVMGVWLLEHVFVLALY
FAFRGWALVRHKLKPHRL*

MIP16369.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18181-PA 555 GF18181-PA 3..213 5..215 884 79.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12153-PA 557 GG12153-PA 2..214 4..216 1053 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18571-PA 567 GH18571-PA 2..225 10..216 670 62.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8112-PC 218 CG8112-PC 1..218 1..218 1153 100 Plus
CG8112-PD 222 CG8112-PD 1..216 1..216 1144 100 Plus
CG8112-PB 559 CG8112-PB 1..216 1..216 1144 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24769-PA 569 GI24769-PA 2..229 3..217 688 60 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12471-PA 563 GL12471-PA 6..221 4..216 809 73 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20833-PA 565 GA20833-PA 12..223 8..216 799 73.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23753-PA 558 GM23753-PA 1..215 1..216 1127 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18564-PA 305 GD18564-PA 1..216 1..216 1148 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22674-PA 574 GJ22674-PA 1..236 1..217 713 62.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11809-PA 577 GK11809-PA 11..228 5..215 650 58.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25896-PA 559 GE25896-PA 1..216 1..216 1088 92.6 Plus

MIP16369.hyp Sequence

Translation from 110 to 766

> MIP16369.hyp
MAAERQEKRGEEETQPRLPDLGFVRDKLQKFQSKMLTDFEQRLSCMVEDV
LQDLRQRELRAHEFPNFERSDRKSTWHNRVTSQAPADVSDSTNGHANGTH
PRPPIQSETSARKQRRQLPEKVFVARESYLTALLQVEHMRTIYHIFYIIL
VMFLLNVICYDYFVDGRFDLGLGTFRGGLRRLHWVMGVWLLEHVFVLALY
FAFRGWALVRHKLKPHRL*

MIP16369.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8112-PC 218 CG8112-PC 1..218 1..218 1153 100 Plus
CG8112-PD 222 CG8112-PD 1..216 1..216 1144 100 Plus
CG8112-PB 559 CG8112-PB 1..216 1..216 1144 100 Plus